ID: uc003exi.1_intron_0_0_chr3_149376496_f.3p
GENE: (1)
chr3:149376965-149377214+


(1)
AGO1.ip 		(1)
AGO2.ip 		(2)
BREAST 		(15)
CELL-LINE 		(1)
CERVIX 		(3)
HEART 		(1)
LIVER 		(1)
OTHER 		(8)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
CCCCTACTCCACCCCATTTGATTCAAATAGGAGTTTATTAAGTAAATCAAACGAGACAATGTAAAGCACTTCGCACAGCACCGGGCTGGTTACGTAAGTGTTTGTTAAATAAAAGAGAACTGTATGTTCTTCAAGTTCACGTATTGTGCCTTAATTTTTTTTTTTTTTTTTTTGAGTGACGTCTCCCTCTTGTCCCCCAGGCTTGAGTGCAATAGCTCCATCTCAGCTCACTGCAACCTCCGCCTCCCGG
........................................................................................................(((((.((((((((((.....))))...(((..(((.....))).)))...........)))))).)))))...........................................................................
.....................................................................................................102......................................................................175.........................................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR040034(GSM532919)
G001N. (cervix)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR191405(GSM715515)
55genomic small RNA (size selected RNA from t. (breast)		SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
....................................................................................................................................................CCTTAATTTTTTTTTTTTTTTTTTAAG...........................................................................2718.000.005.004.003.006.00----------------------------
.....................................................................................................................................................CTTAATTTTTTTTTTTTTTCTG...............................................................................2211.000.001.005.003.002.00----------------------------
.................TTGATTCAAATAGGAGTT.......................................................................................................................................................................................................................18111.0011.00-----11.00--------------------------
....................................................................................................................................................CCTTAATTTTTTTTTTTTTTAAG...............................................................................239.000.006.00-2.001.00----------------------------
.....................................................................................................................................................CTTAATTTTTTTTTTTTTTAAAG..............................................................................238.000.005.001.001.001.00----------------------------
....................................................................................................................................................CCTTAATTTTTTTTTTTTATG.................................................................................215.000.002.002.00-1.00----------------------------
....................................................................................................................................................CCTTAATTTTTTTTTTTTTTATG...............................................................................234.000.002.002.00------------------------------
..........................................................................................................AAATAAAAGAGAACTGTATG............................................................................................................................2014.004.00---------2.002.00---------------------
....................................................................................................................................................CCTTAATTTTTTTTTTTTAAG.................................................................................214.000.001.001.001.001.00----------------------------
..................................................................................................................................................................................................................................CTCACTGCAACCTCCGCCTCCCGGCCC273.000.00----3.00---------------------------
....................................................................................................................................................CCTTAATTTTTTTTTTTTTTTTTTATG...........................................................................273.000.00--1.001.00--1.00-------------------------
......................................................................................................................................................TTAATTTTTTTTTTTTTTTTTCTTG...........................................................................253.000.001.00-1.00-1.00---------------------------
.....................................................................................................................................................CTTAATTTTTTTTTTTTTTTTTTACG...........................................................................263.000.00-2.00-1.00----------------------------
.....................................................................................................................................................CTTAATTTTTTTTTTTTTTTTTTTCTT..........................................................................272.000.001.00-1.00-----------------------------
.....................................................................................................................................................CTTAATTTTTTTTTTTTTTTTTACG............................................................................252.000.00-2.00------------------------------
....................................................................................................................................................CCTTAATTTTTTTTTTTTTTTTTTTATG..........................................................................282.000.00-1.00-1.00----------------------------
....................................................................................................................................................CCTTAATTTTTTTTTTTTTTTTACG.............................................................................252.000.00--1.001.00----------------------------
.....................................................................................................................................................CTTAATTTTTTTTTTTTTTTTTCTT............................................................................252.000.001.00-1.00-----------------------------
.....................................................................................................................................................CTTAATTTTTTTTTTTTTTTTATAT............................................................................252.000.001.001.00------------------------------
.....................................................................................................................................................CTTAATTTTTTTTTTTTTTTTTTCTT...........................................................................262.000.00--2.00-----------------------------
.....................................................................................................................................................CTTAATTTTTTTTTTTTTTTTTTCG............................................................................252.000.00--2.00-----------------------------
.....................................................................................................................................................CTTAATTTTTTTTTTTTTTTTTTCCGG..........................................................................272.000.00------2.00-------------------------
.....................................................................................................................................................CTTAATTTTTTTTTTTTTTTTTTATT...........................................................................262.000.001.00-1.00-----------------------------
.....................................................................................................................................................CTTAATTTTTTTTTTTTTTTTTTTAAAT.........................................................................282.000.002.00-------------------------------
....................................................................................................................................................CCTTAATTTTTTTTTTTATG..................................................................................202.000.001.00--1.00----------------------------
.....................................................................................................................................................CTTAATTTTTTTTTTTTTTTTTTTAAAA.........................................................................282.000.00-2.00------------------------------
.....................................................................................................................................................CTTAATTTTTTTTTTTTTTTTTTAATG..........................................................................272.000.001.001.00------------------------------
....................................................................................................................................................CCTTAATTTTTTTTTTTTTTTTTATG............................................................................262.000.001.001.00------------------------------
.....................................................................................................................................................CTTAATTTTTTTTTTTTTTAT................................................................................211.000.001.00-------------------------------
........................................................................................................................................................AATTTTTTTTTTTTTTTTTTTGAGGAA.......................................................................271.000.00----1.00---------------------------
....................................................................................................................................................CCTTAATTTTTTTTTTTTTTTTTAAT............................................................................261.000.00---1.00----------------------------
..............................................TCAAACGAGACAATGTGG..........................................................................................................................................................................................181.000.00----------------------1.00---------
........................................................................................................................................................AATTTTTTTTTTTTTTTTTTTGAGGGG.......................................................................271.000.00-------1.00------------------------
.....................................................................................................................................................CTTAATTTTTTTTTTTTTTTTATTG............................................................................251.000.00-1.00------------------------------
.....................................................................................................................................................CTTAATTTTTTTTTTTTTTATG...............................................................................221.000.00-1.00------------------------------
........................................................................................................................................................AATTTTTTTTTTTTTTTTTTTGAGGGGG......................................................................281.000.00----1.00---------------------------
.....................................................................................................................................................CTTAATTTTTTTTTTTTTTATTG..............................................................................231.000.00-1.00------------------------------
.....................................................................................................................................................CTTAATTTTTTTTTTTTTTTTTCCG............................................................................251.000.00-1.00------------------------------
....................................................................................................................................................CCTTAATTTTTTTTTTTTTTAT................................................................................221.000.00---1.00----------------------------
....................................................................................................................................................CCTTAATTTTTTTTTTTTTTTTAAT.............................................................................251.000.00---1.00----------------------------
....................................................................................................................................................CCTTAATTTTTTTTTTTTTTTTTAGT............................................................................261.000.001.00-------------------------------
................................................................................................................................................................................................................................AGCTCACTGCAACCTCCGCCTCCCGCGC281.000.00-------1.00------------------------
....................................................................................................................................................CCTTAATTTTTTTTTTTTTTTTTAATT...........................................................................271.000.00--1.00-----------------------------
............................................................................................................ATAAAAGAGAACTGTATG............................................................................................................................1811.001.00---------1.00----------------------
.............................................................................................................................................................................................TTGTCCCCCAGGCTTGAGTGCAGCGG...................................261.000.00----1.00---------------------------
................................................................................................................................................................................................................................AGCTCACTGCAACCTCCGCCTCCCGGCTCC301.000.00----1.00---------------------------
....................................................................................................................................................CCTTAATTTTTTTTTTTTTTTTTTTAAT..........................................................................281.000.001.00-------------------------------
......................................................................................................................................................TTAATTTTTTTTTTTTTTTTTCCAG...........................................................................251.000.00-1.00------------------------------
....................................................................................................................................................CCTTAATTTTTTTTTTTTTTTTCTTG............................................................................261.000.00--1.00-----------------------------
......................................................................................................................................................TTAATTTTTTTTTTTTTTTTTCCGG...........................................................................251.000.00-1.00------------------------------
.....................................................................................................................................................CTTAATTTTTTTTTTTTTTTTTATTT...........................................................................261.000.00--1.00-----------------------------
.....................................................................................................................................................CTTAATTTTTTTTTTTTTTTTTCTTG...........................................................................261.000.00---1.00----------------------------
.....................................................................................................................................................................................................................................ACTGCAACCTCCGCCTCCCGGCCC241.000.00----1.00---------------------------
....................................................................................................................................................CCTTAATTTTTTTTTTTAAAG.................................................................................211.000.00---1.00----------------------------
.....................................................................................................................................................CTTAATTTTTTTTTTTTTTTTTCCT............................................................................251.000.00-1.00------------------------------
....................................................................................................................................................CCTTAATTTTTTTTTTTTTTTTTTTAGG..........................................................................281.000.00--1.00-----------------------------
......................................................................................................................................................TTAATTTTTTTTTTTTTTTTTCCTT...........................................................................251.000.001.00-------------------------------
......................................................................................................................................................TTAATTTTTTTTTTTTTTTTTTTGAGTTTTG.....................................................................311.000.00------1.00-------------------------
.....................................................................................................................................................CTTAATTTTTTTTTTTTTTTTTTTCTAG.........................................................................281.000.00-1.00------------------------------
.......................................................................................................................................................TAATTTTTTTTTTTTTTTTTCGGC...........................................................................241.000.00----1.00---------------------------
.....................................................................................................................................................CTTAATTTTTTTTTTTTTTTTAATA............................................................................251.000.001.00-------------------------------
....................................................................................................................................................CCTTAATTTTTTTTTTTTTTTTTCTTT...........................................................................271.000.001.00-------------------------------
....................................................................................................TTTGTTAAATAAAAGAGAACTGT...............................................................................................................................2311.001.00------------------------------1.00-
...........................................................................................................................................................TTTTTTTTTTTTTTTTTTGAGTGAAAGG...................................................................281.000.00-------1.00------------------------
.....................................................................................................................................................CTTAATTTTTTTTTTTTTTTTTTCC............................................................................251.000.00---1.00----------------------------
......................................................................................................................................................TTAATTTTTTTTTTTTTTTTTCGGG...........................................................................251.000.00----1.00---------------------------
................................................................................................................................................................................................................................AGCTCACTGCAACCTCCGCCTCCCGGCCC291.000.00----1.00---------------------------
....................................................................................................................................................CCTTAATTTTTTTTTTTTTTTTTTGG............................................................................261.000.00--1.00-----------------------------
.....................................................................................................................................................CTTAATTTTTTTTTTTTTTTTTTTATTA.........................................................................281.000.00--1.00-----------------------------
....................................................................................................................................................CCTTAATTTTTTTTTTTTTTTTATG.............................................................................251.000.00-1.00------------------------------
....................................................................................................................................................CCTTAATTTTTTTTTTTTTTTTTTTACG..........................................................................281.000.001.00-------------------------------
................................................................................................................................................................................................................................AGCTCACTGCAACCTCCGCCTCCCGCGTC291.000.00-------1.00------------------------
................................................................................................................................................................................................TCCCCCAGGCTTGAGTGCAGGGC...................................231.000.00----1.00---------------------------
.....................................................................................................................................................CTTAATTTTTTTTTTTTTTTTTTTATAA.........................................................................281.000.00-1.00------------------------------
....................................................................................................................................................CCTTAATTTTTTTTTTTTTAAAT...............................................................................231.000.001.00-------------------------------
..............................................................................................................................................................................................................................TCAGCTCACTGCAACCTCCGCCTCCCGGTAAG321.000.00----1.00---------------------------
.....................................................................TTCGCACAGCACCGGGCTG..................................................................................................................................................................1911.001.00----------1.00---------------------
.....................................................................................................................................................CTTAATTTTTTTTTTTTTTTTTTACGG..........................................................................271.000.00------1.00-------------------------
....................................................................................................................................................CCTTAATTTTTTTTTTTTTTTTTTTGG...........................................................................271.000.00-1.00------------------------------
....................................................................................................................................................CCTTAATTTTTTTTTTTTTTTTTTTAT...........................................................................271.000.00-1.00------------------------------
................................................................................................................................................................TTTTTTTTTTTTTGAGTGCGC.....................................................................211.000.00----1.00---------------------------
.................................................................................................................................................................TTTTTTTTTTTTGAGTGACGGGG..................................................................231.000.00-------1.00------------------------
.....................................................................................................................................................CTTAATTTTTTTTTTTTTTTTTTAATT..........................................................................271.000.001.00-------------------------------
.....................................................................................................................................................CTTAATTTTTTTTTTTTTTTTTTTCTCG.........................................................................281.000.00---1.00----------------------------
....................................................................................................................................................CCTTAATTTTTTTTTTTTTTTTCAAG............................................................................261.000.00---1.00----------------------------
.....................................................................................................................................................CTTAATTTTTTTTTTTTTTTTTTCTTG..........................................................................271.000.00--1.00-----------------------------
........................................................................................................................................................AATTTTTTTTTTTTTTTTTTTGAAGGG.......................................................................271.000.00------1.00-------------------------
.....................................................................................................................................................CTTAATTTTTTTTTTTTTTACAG..............................................................................231.000.001.00-------------------------------
...........................................................................CAGCACCGGGCTGGTTACCTA..........................................................................................................................................................211.000.00------------------------1.00-------
....................................................................................................................................................CCTTAATTTTTTTTTTTACTT.................................................................................211.000.00-1.00------------------------------
........................................................................................................................................................AATTTTTTTTTTTTTTTTTTTGAGGGTT......................................................................281.000.00----1.00---------------------------
....................................................................................................................................................CCTTAATTTTTTTTTTTTTTTTTTCTAG..........................................................................281.000.00--1.00-----------------------------
.....................................................................................................................................................CTTAATTTTTTTTTTTTTTTTTTCAG...........................................................................261.000.00--1.00-----------------------------
................................................................................................................................................................................................................................AGCTCACTGCAACCTCCGCCTCCCGGTTG291.000.00----1.00---------------------------
......................................................................................................................................................TTAATTTTTTTTTTTTTTTTTCGGC...........................................................................251.000.00----1.00---------------------------
.....................................................................................................................................................CTTAATTTTTTTTTTTTTTTTTTATG...........................................................................261.000.00-1.00------------------------------
....................................................................................................................................................CCTTAATTTTTTTTTTTTTATG................................................................................221.000.00-1.00------------------------------
................................................................................................................................................................................................................................AGCTCACTGCAACCTCCGCCTCCCGGTTCC301.000.00----1.00---------------------------
....................................................................................................................................................CCTTAATTTTTTTTTTTTTTTTTAGG............................................................................261.000.00--1.00-----------------------------
.....................................................................................................................................................................................................................................ACTGCAACCTCCGCCTCCCGGC221.000.00--------------------1.00-----------
.........................................................................................................................................................ATTTTTTTTTTTTTTTTTTTGAGCAGG......................................................................271.000.00----1.00---------------------------
..............................................................................................................................................................................................TGTCCCCCAGGCTTGAGTGCAGCGG...................................251.000.00----1.00---------------------------
....................................................................................................................................................CCTTAATTTTTTTTTTTTTTAAAG..............................................................................241.000.00-1.00------------------------------
.....................................................................................................................................................................................................................AGCTCCATCTCAGCTCACT..................1990.110.11-------------------------------0.11

Antisense strand
CCCCTACTCCACCCCATTTGATTCAAATAGGAGTTTATTAAGTAAATCAAACGAGACAATGTAAAGCACTTCGCACAGCACCGGGCTGGTTACGTAAGTGTTTGTTAAATAAAAGAGAACTGTATGTTCTTCAAGTTCACGTATTGTGCCTTAATTTTTTTTTTTTTTTTTTTGAGTGACGTCTCCCTCTTGTCCCCCAGGCTTGAGTGCAATAGCTCCATCTCAGCTCACTGCAACCTCCGCCTCCCGG
........................................................................................................(((((.((((((((((.....))))...(((..(((.....))).)))...........)))))).)))))...........................................................................
.....................................................................................................102......................................................................175.........................................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR040034(GSM532919)
G001N. (cervix)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR191405(GSM715515)
55genomic small RNA (size selected RNA from t. (breast)		SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
................................................................................................................................................................................................................................AGCTCACTGCAACCTCCGCCTCCCGCTG 2810.000.00--------3.00--1.001.001.00---------1.00--1.00-1.001.00--
.................................................................................................................................................GTGCCTTAATTTTTTTTTTTTTTTTTTTCATA......................................................................... 321.000.00----------------1.00---------------
............................................................................................................................................................................................................................TCTCAGCTCACTGCAACCTCCGCGTG.... 261.000.00---------------------1.00----------
..................................................................................................................................................................TTTTTTTTTTTGAGTGACC..................................................................... 191.000.00--------------1.00-----------------
...........................................................................................................................ATGTTCTTCAAGTTCTGGA............................................................................................................ 191.000.00-----------1.00--------------------
........................................................................................................................................................................................................................TCCATCTCAGCTCACTGAA............... 191.000.00-------------------------1.00------
..................................................................CCGGTGCTGTGCGAAGTG...................................................................................................................................................................... 1811.001.00-------------1.00------------------
..................................................................CGGTGCTGTGCGAAGTG....................................................................................................................................................................... 1711.001.00-----------------1.00--------------
......................................................................................................................................................................................CTCCCTCTTGTCCCCTAC.................................................. 181.000.00---------------1.00----------------
..................................................................CAGCCCGGTGCTGTGCGAAGTG.................................................................................................................................................................. 2211.001.00------------------1.00-------------
...................AACTCCTATTTGAATC....................................................................................................................................................................................................................... 1641.001.00-------------------1.00------------
................................................................................................................................................................................................................................AGCTCACTGCAACCTCCGCCTCCCGGCTG 291.000.00------------1.00-------------------
.................................................................GCCCGGTGCTGTGCGAAGTGC.................................................................................................................................................................... 2111.001.00---------------------------1.00----