ID: uc003ewt.1_intron_5_0_chr3_148868468_f.3p
GENE: (6)
chr3:148871081-148871330+


(2)
B-CELL
(2)
BREAST
(4)
CELL-LINE
(1)
CERVIX
(1)
HEART
(1)
HELA
(3)
OTHER
(3)
SKIN
(1)
XRN.ip

Sense strand
GGTTACATAGGTTTAGATAACCTCTTCTGTTAAGAATAGGAATCTGGGTTGGTCTTTTGTTTGTTTGTTTGTTTTTTGGTGGTGGTGGGTATGGGATGGTGGCAGCAGAAGAGATTTGATCAAATAAACTGACTGATTTTTGAAGATTGAAGTGCATGTACCTTTATTTCTTGCTTAAATATGTGATTTTCCTTTACTAGGCTTGCCCACCTGTCAGTATGGATGTCTGTGCTTTAAGAATACAGCTTTT
.............................................................((.(((((.....(((.(((........))).)))....)))))))...............................................................................................................................................
..................................................51.......................................................108............................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR189782SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189783SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR040035(GSM532920)
G001T. (cervix)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
....................................................TCTTTTGTTTGTTTGTTTGTTTTTCCC...........................................................................................................................................................................2742.000.0020.0022.00---------------
....................................................TCTTTTGTTTGTTTGTTTGTTTTCCCC...........................................................................................................................................................................279.000.005.004.00---------------
....................................................................................................................................CTGATTTTTGAAGATTGAAGTGCATGTACCTTTATTTCTTGCTTAAATATGTGATTTTCCTTTACTAG..................................................6819.009.00--9.00--------------
....................................................TCTTTTGTTTGTTTGTTTGTTTTTCC............................................................................................................................................................................265.000.002.003.00---------------
.....................................................CTTTTGTTTGTTTGTTTGTTTTTCCC...........................................................................................................................................................................264.000.003.001.00---------------
....................................................TCTTTTGTTTGTTTGTTTGTTTTTCT............................................................................................................................................................................264.000.002.002.00---------------
.....................................................CTTTTGTTTGTTTGTTTGTTTTCCTC...........................................................................................................................................................................263.000.003.00----------------
....................................................TCTTTTGTTTGTTTGTTTGTTTTCTT............................................................................................................................................................................263.000.002.001.00---------------
....................................................TCTTTTGTTTGTTTGTTTGTTTTTTCCC..........................................................................................................................................................................283.000.001.002.00---------------
.................................................TGGTCTTTTGTTTGTTTGTTTGTTTTTGG............................................................................................................................................................................293.000.001.002.00---------------
................................................TTGGTCTTTTGTTTGTTTGTTTGTTTC...............................................................................................................................................................................273.000.003.00----------------
.................................................TGGTCTTTTGTTTGTTTGTTTGTTTG...............................................................................................................................................................................263.000.002.001.00---------------
....................................................TCTTTTGTTTGTTTGTTTGTGGAG..............................................................................................................................................................................243.000.00-3.00---------------
....................................................TCTTTTGTTTGTTTGTTTGTTTCTC.............................................................................................................................................................................253.000.002.001.00---------------
....................................................TCTTTTGTTTGTTTGTTTGTTTAATC............................................................................................................................................................................262.000.001.001.00---------------
....................................................TCTTTTGTTTGTTTGTTTGTTTTTTTGAC.........................................................................................................................................................................292.000.001.001.00---------------
.....................................................CTTTTGTTTGTTTGTTTGTTTTTCTGC..........................................................................................................................................................................272.000.00-2.00---------------
..................................................GGTCTTTTGTTTGTTTGTTTGTTTGTG.............................................................................................................................................................................272.000.002.00----------------
.....................................................CTTTTGTTTGTTTGTTTGTTTTCGAG...........................................................................................................................................................................262.000.002.00----------------
..................................................................................TGGTGGGTATGGGATGGTGGCAGC................................................................................................................................................2412.002.002.00----------------
....................................................TCTTTTGTTTGTTTGTTTGTTTTTCGAG..........................................................................................................................................................................282.000.001.00--1.00-------------
....................................................TCTTTTGTTTGTTTGTTTGTTTTTTCG...........................................................................................................................................................................272.000.00-2.00---------------
................................................TTGGTCTTTTGTTTGTTTGTTTGTTTTC..............................................................................................................................................................................282.000.001.001.00---------------
....................................................TCTTTTGTTTGTTTGTTTGTTTTCCTC...........................................................................................................................................................................272.000.00-2.00---------------
....................................................TCTTTTGTTTGTTTGTTTGTTTTTTCTC..........................................................................................................................................................................282.000.001.001.00---------------
....................................................TCTTTTGTTTGTTTGTTTGTTTTTAATT..........................................................................................................................................................................282.000.002.00----------------
.....................................................CTTTTGTTTGTTTGTTTGTTTTTTTGCT.........................................................................................................................................................................282.000.00-2.00---------------
.................................................TGGTCTTTTGTTTGTTTGTTTGTTTGGC.............................................................................................................................................................................281.000.001.00----------------
.................................................TGGTCTTTTGTTTGTTTGTTTGTTTTCG.............................................................................................................................................................................281.000.001.00----------------
....................................................TCTTTTGTTTGTTTGTTTGTTTTTTCTTG.........................................................................................................................................................................291.000.001.00----------------
.....................................................CTTTTGTTTGTTTGTTTGTTTTCTTA...........................................................................................................................................................................261.000.001.00----------------
.............................................................................................................................................................................................................CCCACCTGTCAGTATGGA...........................1811.001.00-------1.00---------
.................................................TGGTCTTTTGTTTGTTTGTTTGTTTGCT.............................................................................................................................................................................281.000.001.00----------------
....................................................TCTTTTGTTTGTTTGTTTGTTCCTT.............................................................................................................................................................................251.000.00-1.00---------------
....................................................TCTTTTGTTTGTTTGTTTGTTTCAGG............................................................................................................................................................................261.000.001.00----------------
....................................................TCTTTTGTTTGTTTGTTTCTCG................................................................................................................................................................................221.000.001.00----------------
....................................................TCTTTTGTTTGTTTGTTTGTTTTTTTTG..........................................................................................................................................................................281.000.00---1.00-------------
.................................................TGGTCTTTTGTTTGTTTGTTTGTTTGTT.............................................................................................................................................................................281.000.001.00----------------
...............................................................................................ATGGTGGCAGCAGAATTTT........................................................................................................................................191.000.00--------------1.00--
..........................................................................................................................................TTTGAAGATTGAAGTGGGGA............................................................................................201.000.00-----1.00-----------
.......................................................................................................................................................................................................................AGTATGGATGTCTGTGCTT................1911.001.00-----------1.00-----
.....................................................CTTTTGTTTGTTTGTTTGTTTTCCAC...........................................................................................................................................................................261.000.00-1.00---------------
....................................................TCTTTTGTTTGTTTGTTTGTTGGTG.............................................................................................................................................................................251.000.00-1.00---------------
...................................................GTCTTTTGTTTGTTTGTTTTGG.................................................................................................................................................................................221.000.001.00----------------
.........................................................TGTTTGTTTGTTTGTTTTTTGGTCCC.......................................................................................................................................................................261.000.001.00----------------
................................................TTGGTCTTTTGTTTGTTTGTTTGTTTTCTG............................................................................................................................................................................301.000.00---1.00-------------
....................................................TCTTTTGTTTGTTTGTTTGTTTTAGT............................................................................................................................................................................261.000.001.00----------------
.....................................................CTTTTGTTTGTTTGTTTGTTGCGG.............................................................................................................................................................................241.000.00-1.00---------------
....................................................TCTTTTGTTTGTTTGTTTGTTTCTTG............................................................................................................................................................................261.000.001.00----------------
.................................................TGGTCTTTTGTTTGTTTGTTTGTTTTTGA............................................................................................................................................................................291.000.001.00----------------
.....................................................CTTTTGTTTGTTTGTTTGTTTTTTGCC..........................................................................................................................................................................271.000.001.00----------------
..................................................GGTCTTTTGTTTGTTTGTTTGTTTTTA.............................................................................................................................................................................271.000.001.00----------------
.....................................................CTTTTGTTTGTTTGTTTGTTTTTTCCA..........................................................................................................................................................................271.000.00---1.00-------------
.................................................TGGTCTTTTGTTTGTTTGTTTGTTTTTTGT...........................................................................................................................................................................301.000.00-1.00---------------
............................................TGGGTTGGTCTTTTGTTTGTTTGTTTGTTTTC..............................................................................................................................................................................321.000.001.00----------------
....................................................TCTTTTGTTTGTTTGTTTGTTTTCAG............................................................................................................................................................................261.000.00-1.00---------------
...................................................GTCTTTTGTTTGTTTGTTTGTTTTTTTG...........................................................................................................................................................................281.000.00-1.00---------------
..................................................................................................................................................................................................................CTGTCAGTATGGATGTCTGTGC..................2211.001.00----------1.00------
....................................................................TTGTTTTTTGGTGGTGGCG...................................................................................................................................................................191.000.001.00----------------
....................................................TCTTTTGTTTGTTTGTTTGTTTCCC.............................................................................................................................................................................251.000.00-1.00---------------
.................................................TGGTCTTTTGTTTGTTTGTTTGCTC................................................................................................................................................................................251.000.00-1.00---------------
....................................................TCTTTTGTTTGTTTGTTTGTTTAATG............................................................................................................................................................................261.000.00-1.00---------------
.....................................................CTTTTGTTTGTTTGTTTGTTTTAAGG...........................................................................................................................................................................261.000.00-1.00---------------
....................................................................................................................................................................................ATGTGATTTTCCTTTACTAG..................................................2011.001.00------1.00----------
....................................................TCTTTTGTTTGTTTGTTTGTTCTTA.............................................................................................................................................................................251.000.001.00----------------
....................................................TCTTTTGTTTGTTTGTTTGTTTTTATG...........................................................................................................................................................................271.000.00-1.00---------------
....................................................TCTTTTGTTTGTTTGTTTGTTTTAGG............................................................................................................................................................................261.000.001.00----------------
....................................................TCTTTTGTTTGTTTGTTTGTTCTAG.............................................................................................................................................................................251.000.00-1.00---------------
.................................................TGGTCTTTTGTTTGTTTGTTTTCGG................................................................................................................................................................................251.000.001.00----------------
...........................................................................TTGGTGGTGGTGGGTATGGGACGG.......................................................................................................................................................241.000.001.00----------------
....................................................TCTTTTGTTTGTTTGTTTGTTTTTCAG...........................................................................................................................................................................271.000.00---1.00-------------
....................................................TCTTTTGTTTGTTTGTTTGTTTTTTGCTGC........................................................................................................................................................................301.000.001.00----------------
.............................................................................................................................................................................................................CCCACCTGTCAGTATGGATGTCT......................2311.001.00-----1.00-----------
....................................................TCTTTTGTTTGTTTGTTTGTTTTTTGAGGC........................................................................................................................................................................301.000.001.00----------------
....................................................TCTTTTGTTTGTTTGTTTGTTTTCTTA...........................................................................................................................................................................271.000.001.00----------------
.................................................TGGTCTTTTGTTTGTTTGTTTGTTTTTTT............................................................................................................................................................................291.000.001.00----------------
....................................................TCTTTTGTTTGTTTGTTTGTTTTTTGGTGGC.......................................................................................................................................................................311.000.00-1.00---------------
......................................................................................................................................................................................................................CAGTATGGATGTCTGTGCTTTAAG............2411.001.00------------1.00----
....................................................TCTTTTGTTTGTTTGTTTGTTTTTTCGC..........................................................................................................................................................................281.000.001.00----------------
..........................................................................................................................................TTTGAAGATTGAAGTGG...............................................................................................171.000.00---------1.00-------
.....................................................CTTTTGTTTGTTTGTTTGTTTTTAGT...........................................................................................................................................................................261.000.001.00----------------
....................................................TCTTTTGTTTGTTTGTTTGTTTTTTCCT..........................................................................................................................................................................281.000.00-1.00---------------
...................................................GTCTTTTGTTTGTTTGTTTGTTTTTCCC...........................................................................................................................................................................281.000.001.00----------------
................................................TTGGTCTTTTGTTTGTTTGTTTGTTTTG..............................................................................................................................................................................281.000.00-1.00---------------
....................................................TCTTTTGTTTGTTTGTTTGTTTTTCTT...........................................................................................................................................................................271.000.001.00----------------
....................................................TCTTTTGTTTGTTTGTTTGTTTCTCC............................................................................................................................................................................261.000.00-1.00---------------
....................................................TCTTTTGTTTGTTTGTTTGTTTTTTGG...........................................................................................................................................................................2720.500.50-0.50---------------
............................................TGGGTTGGTCTTTTGT..............................................................................................................................................................................................1660.170.17-0.17---------------
...................................................GTCTTTTGTTTGTTTGTTTGTTTTTTG............................................................................................................................................................................2760.170.17---0.17-------------

Antisense strand
GGTTACATAGGTTTAGATAACCTCTTCTGTTAAGAATAGGAATCTGGGTTGGTCTTTTGTTTGTTTGTTTGTTTTTTGGTGGTGGTGGGTATGGGATGGTGGCAGCAGAAGAGATTTGATCAAATAAACTGACTGATTTTTGAAGATTGAAGTGCATGTACCTTTATTTCTTGCTTAAATATGTGATTTTCCTTTACTAGGCTTGCCCACCTGTCAGTATGGATGTCTGTGCTTTAAGAATACAGCTTTT
.............................................................((.(((((.....(((.(((........))).)))....)))))))...............................................................................................................................................
..................................................51.......................................................108............................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR189782SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189783SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR040035(GSM532920)
G001T. (cervix)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
................................................................................................TGGTGGCAGCAGAAGAG......................................................................................................................................... 172.000.00----2.00------------
..........................................................GTTTGTTTGTTTGTTTTTTGGTTCAG...................................................................................................................................................................... 261.000.00--------1.00--------
.............................................................................................GGATGGTGGCAGCAGGGA........................................................................................................................................... 181.000.00-------------1.00---
.........................................................................TTTTGGTGGTGGTGGGTGGTC............................................................................................................................................................ 211.000.00---------------1.00-
..................................................AAAACAAACAAACAAACAAAAGACC............................................................................................................................................................................... 2570.140.14----------------0.14