ID: uc003ewq.1_intron_1_0_chr3_148750160_r.3p
GENE: HLTF(24)
chr3:148750110-148750359-


(2)
AGO1.ip 		(6)
AGO2.ip 		(2)
AGO3.ip 		(5)
B-CELL 		(7)
BREAST 		(36)
CELL-LINE 		(4)
CERVIX 		(1)
FIBROBLAST 		(3)
HEART 		(4)
HELA 		(5)
LIVER 		(2)
OTHER 		(8)
SKIN 		(1)
XRN.ip

Sense strand
TCGTACAGCCATATTCTTTATATAAGAAAACCATATTGGGTAAGGAAAGCAAAGTTCAGTTCTATTAAATAGTTATTATAGTTTGGTGCAAAAGTAATTGCGGTTTTTGCCATTAGGCAAATCTTTCATTTAGTTTTTTTAATAAAGATTTTAAATACTATGCCTTAAAAACTACTTAACTTTTTTTTTTCTTTTTAAAGTTCATTGTAAAGGACTCTGTTGAAGAAAATATGCTGAAAATACAAAACAA
.........................................................................................((((((......((((((((.....((((((((((((...((((.....)))).)))))))..........))))))))))))).....))))))..................................................................
....................................................................................85............................................................................................................195.....................................................
SizePerfect hitTotal NormPerfect NormSRR189786SRR189782DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR189784SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189787DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR343336GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR343337SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189785SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR343334SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR040010(GSM532895)
G529N. (cervix)		SRR189783SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029125(GSM416754)
U2OS. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR191419(GSM715529)
41genomic small RNA (size selected RNA from t. (breast)		SRR037936(GSM510474)
293cand1. (cell line)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040025(GSM532910)
G613T. (cervix)		SRR029127(GSM416756)
A549. (cell line)		SRR038854(GSM458537)
MM653. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)		TAX577579(Rovira)
total RNA. (breast)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038853(GSM458536)
MELB. (cell line)		SRR040024(GSM532909)
G613N. (cervix)		SRR040035(GSM532920)
G001T. (cervix)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
.........................................................................................AAAAGTAATTGCGGTTTTTGC............................................................................................................................................21053.0053.00--27.00---3.004.002.005.005.002.001.00--2.00-----------------------1.00-1.00------------------------------------------
..........................................................................................AAAGTAATTGCGGTTTTTGC............................................................................................................................................20020.0020.00--9.00---1.001.002.001.005.00-1.00-----------------------------------------------------------------------
.........................................................................................AAAAGTAATTGCGGTTTGCC.............................................................................................................................................2017.000.0015.00----1.00---------------------------------------------------------1.00--------------------
.........................................................................................AAAAGTAATTGCGGTTTTTGCC...........................................................................................................................................22015.0015.00--2.00------1.00--2.00-------3.00----3.00---------------1.00-2.00------------------------------------1.00---
.........................................................................................AAAAGTAATTGCGGTTTTTG.............................................................................................................................................20012.0012.00--4.00----3.00--1.001.002.00--1.00--------------------------------------------------------------------
..........................................................................................................................................................................................................CATTGTAAAGGACTCTGTTGAAGA........................24110.0010.00------------------3.00-------1.00-2.00------------------1.00-----------1.00--------1.00--------1.00------
..........................................................................................AAAGTAATTGCGGTTTTTGCCA..........................................................................................................................................2208.008.00-------2.00-1.00----------1.001.00---1.00-2.00--------------------------------------------------------
..........................................................................................AAAGTAATTGCGGTTTTTGCC...........................................................................................................................................2107.007.00--2.00---------5.00-----------------------------------------------------------------------
..........................................................................................................................................................................................................CATTGTAAAGGACTCTGTTGAAG.........................2317.007.00------------------4.00-------3.00---------------------------------------------------------
.............................................................................................................................................................................ACTTAACTTTTTTTTTAG...........................................................185.000.00-------------1.00---2.00-------------2.00----------------------------------------------------
.........................................................................................AAAAGTAATTGCGGTTTGC..............................................................................................................................................195.000.005.00-----------------------------------------------------------------------------------
.............................................................................................................................................................................ACTTAACTTTTTTTTTTCTTTTTTTTG..................................................275.000.00----3.00--------1.00---1.00------------------------------------------------------------------
.........................................................................................AAAAGTAATTGCGGTTTTTCAG...........................................................................................................................................2204.001.00--------------4.00---------------------------------------------------------------------
.............................................................................................................................................................................ACTTAACTTTTTTTTTTCTTTTTG.....................................................244.000.00----3.00--------1.00----------------------------------------------------------------------
.............................................................................................................................................................................ACTTAACTTTTTTTTTTCTTTTTTTG...................................................264.000.00----3.00--------1.00----------------------------------------------------------------------
..........................................................................................AAAGTAATTGCGGTTTGCCA............................................................................................................................................204.000.001.002.00---1.00------------------------------------------------------------------------------
..........................................................................................................................................................................................................CATTGTAAAGGACTCTGTTGAAGAAAATATGCT...............3313.003.00------------------------------3.00-----------------------------------------------------
.........................................................................................AAAAGTAATTGCGGTTTTTGCT...........................................................................................................................................2203.0053.00---------2.00-----------1.00--------------------------------------------------------------
........................................................................................CAAAAGTAATTGCGGTTTTTG.............................................................................................................................................2103.003.00--2.00--------1.00------------------------------------------------------------------------
..........................................................................................AAAGTAATTGCGGTTTGCC.............................................................................................................................................193.000.002.00----1.00------------------------------------------------------------------------------
.............................................................................................................................................................................ACTTAACTTTTTTTTTTCTTG........................................................213.000.00----3.00-------------------------------------------------------------------------------
..........................................................................................AAAGTAATTGCGGTTTTTGCCT..........................................................................................................................................2203.007.00----------1.00-1.00-------1.00---------------------------------------------------------------
..........................................................................................AAAGTAATTGCGGTTTGC..............................................................................................................................................182.000.00---------------------------------1.00-------------------------------1.00------------------
............................................................................................AGTAATTGCGGTTTTTGCCTTT........................................................................................................................................2202.001.00---------1.00-----------1.00--------------------------------------------------------------
...............................................................................................................................................................................TTAACTTTTTTTTTTCTTTTTCAG...................................................242.000.00----------------2.00-------------------------------------------------------------------
.........................................................................................AAAAGTAATTGCGGTTTGAC.............................................................................................................................................202.000.002.00-----------------------------------------------------------------------------------
.........................................................................................AAAAGTAATTGCGGTTTT...............................................................................................................................................1802.002.00------1.001.00----------------------------------------------------------------------------
.........................................................................................AAAAGTAATTGCGGTTTTTGGA...........................................................................................................................................2202.0012.00--------------------------------------------1.00-------------------------1.00-------------
........................................................................................CAAAAGTAATTGCGGTTTTTGC............................................................................................................................................2202.002.00----------1.001.00------------------------------------------------------------------------
.........................................................................................AAAAGTAATTGCGGTTGCC..............................................................................................................................................192.000.002.00-----------------------------------------------------------------------------------
..........................................................................................AAAGTAATTGCGGTTTTTG.............................................................................................................................................1902.002.00---------1.00--1.00-----------------------------------------------------------------------
...............................................................................................................................................................................TTAACTTTTTTTTTTCTTTAAG.....................................................222.000.00-------------1.00---1.00------------------------------------------------------------------
..........................................................................................AAAGTAATTGCGGTTTTTGCCTA.........................................................................................................................................2302.007.00--------------------------------------2.00---------------------------------------------
.................................................................................................................................................................................................................AAGGACTCTGTTGAAGAAAA.....................2012.002.00--------------2.00---------------------------------------------------------------------
..........................................................................................AAAGTAATTGCGGTTTTTGGAAC.........................................................................................................................................2302.002.00--------------2.00---------------------------------------------------------------------
.........................................................................................AAAAGTAATTGCGGTTTTTGAT...........................................................................................................................................2202.0012.00-----1.00----------------------------------------------------------------------------1.00-
...................................................................................................................................................................................CTTTTTTTTTTCTTTTTAAACG.................................................222.000.00----2.00-------------------------------------------------------------------------------
.........................................................................................AAAAGTAATTGCGGTTTTTGCGAAC........................................................................................................................................2502.0053.00-------------------------------------2.00----------------------------------------------
..........................................................................................AAAGTAATTGCGGTTTTTGCCAGA........................................................................................................................................2402.008.00--1.00------------------------------------------------1.00--------------------------------
...........................................................................................AAGTAATTGCGGTTTTTGC............................................................................................................................................1902.002.00---------------------2.00--------------------------------------------------------------
.............................................................................................................................................................................ACTTAACTTTTTTTTTTCTTTG.......................................................222.000.00-------------2.00----------------------------------------------------------------------
...........................................................................................AAGTAATTGCGGTTTTTGCCCTTT.......................................................................................................................................242.000.00---------------------------------------------2.00--------------------------------------
..........................................................................................AAAGTAATTGCGGTTATCG.............................................................................................................................................191.000.00-1.00----------------------------------------------------------------------------------
.................................................................................................................................................................................AACTTTTTTTTTTCTTTTTACTG..................................................231.000.00----------------1.00-------------------------------------------------------------------
................................................................................................................................................................................TAACTTTTTTTTTTCTTTTCTGT...................................................231.000.00------------------------1.00-----------------------------------------------------------
...............................................................................................................................................................................................................TAAAGGACTCTGTTGAAGAAAAA....................231.000.00---------------------------------------------------------------------------1.00--------
.........................................................................................AAAAGTAATTGCGGTTTTTGAAG..........................................................................................................................................2301.0012.00--------------------------------------------1.00---------------------------------------
.........................................................................................AAAAGTAATTGCGGTTTGCA.............................................................................................................................................201.000.00-----------------------------------1.00------------------------------------------------
............................................................................................AGTAATTGCGGTTTTTGCCTCT........................................................................................................................................2201.001.00-------------------------------------------------------------------1.00----------------
..............................................................................................................................................................................................................GTAAAGGACTCTGTTGAAGAAAATATAC................281.000.00--------------------------------------------------------------------------1.00---------
............................................................................................................................................................................TACTTAACTTTTTTTTTAG...........................................................191.000.00----1.00-------------------------------------------------------------------------------
..........................................................................................AAAGTAATTGCGGTTTTTGGAA..........................................................................................................................................2201.002.00----------------------------------------------------1.00-------------------------------
...............................................................................................AATTGCGGTTTTTGCCAT.........................................................................................................................................1801.001.00-------------------------------------------------1.00----------------------------------
...............................................................................................................................................................................TTAACTTTTTTTTTTCTTCGAG.....................................................221.000.00----------------1.00-------------------------------------------------------------------
.....................................................................................................................................................................................TTTTTTTTTCTTTTTAAAGCGGG..............................................231.000.00------------------------1.00-----------------------------------------------------------
.............................................................................................................................................................................ACTTAACTTTTTTTTTTCTTTGAG.....................................................241.000.001.00-----------------------------------------------------------------------------------
..................................................................................................................................................................................ACTTTTTTTTTTCTTTTTAAACTGG...............................................251.000.00------------------------1.00-----------------------------------------------------------
..........................................................................................AAAGTAATTGCGGTTTTTGGAAA.........................................................................................................................................2301.002.00--------------1.00---------------------------------------------------------------------
.......................................................................................GCAAAAGTAATTGCGGTTTGC..............................................................................................................................................211.000.001.00-----------------------------------------------------------------------------------
.................................................................................................................................................................................AACTTTTTTTTTTCTTTTTAATG..................................................231.000.00----1.00-------------------------------------------------------------------------------
..........................................................................................AAAGTAATTGCGGTTTTTGAAAA.........................................................................................................................................2301.002.00-----------------------------------------------------------------------1.00------------
............................................................................................................................................................................................................TTGTAAAGGACTCTGTTGAAGAA.......................2311.001.00----------------------------------------------1.00-------------------------------------
..................................................................................................................................................................................................................AGGACTCTGTTGAAGAAAATAA..................221.000.00--------------------------------------------------------1.00---------------------------
...................................................................................................................................................................................................................GGACTCTGTTGAAGAAAATA...................2011.001.00--------------------------------------------------------------1.00---------------------
............................................................................................AGTAATTGCGGTTTTTGCC...........................................................................................................................................1901.001.00---------------------1.00--------------------------------------------------------------
..................................................................................................................................................................................ACTTTTTTTTTTCTTTTTAAACTAG...............................................251.000.00----1.00-------------------------------------------------------------------------------
...................................................................................TGGTGCAAAAGTAATTGCGGTT.................................................................................................................................................2201.001.00---------------1.00--------------------------------------------------------------------
............................................................................................................................................................................................................TTGTAAAGGACTCTGTTGAAGAAAATATG.................2911.001.00---------------------------------------------------------1.00--------------------------
.........................................................................................AAAAGTAATTGCGGTTTTTGAG...........................................................................................................................................2201.0012.00--------------------------------------------------1.00---------------------------------
.............................................................................................................................................................................ACTTAACTTTTTTTTTTCTTTTTTG....................................................251.000.00----1.00-------------------------------------------------------------------------------
..............................................................................................................................................................................................................GTAAAGGACTCTGTTGAAG.........................1911.001.00----------------------------1.00-------------------------------------------------------
.............................................................................................................................................................................ACTTAACTTTTTTTTTTCTTTTTTAAG..................................................271.000.00----------------1.00-------------------------------------------------------------------
................................................................................................................................................................................................................AAAGGACTCTGTTGAAGAAAATATGC................2611.001.00------------------------------------------1.00-----------------------------------------
.................................................................................................TTGCGGTTTTTGCCATTAGGC....................................................................................................................................2111.001.00------------------------1.00-----------------------------------------------------------
...................................................................................................................................................................................CTTTTTTTTTTCTTTTTAACTAG................................................231.000.00-------------1.00----------------------------------------------------------------------
..............................................................................................................................................................................CTTAACTTTTTTTTTTCTTTAAAG....................................................241.000.00-------------1.00----------------------------------------------------------------------
..............................................................................................................................................................................CTTAACTTTTTTTTTTCTTTTTTTG...................................................251.000.00----1.00-------------------------------------------------------------------------------
...................................................................................................................................................................................CTTTTTTTTTTCTTTTTAAACAAG...............................................241.000.00----1.00-------------------------------------------------------------------------------
............................................................................................................................................................................TACTTAACTTTTTTTTAGG...........................................................191.000.00----------------1.00-------------------------------------------------------------------
............................................................................................................................................................................................................TTGTAAAGGACTCTGTTGAAGAAAATATGCT...............3111.001.00----------------------------------------------------------1.00-------------------------
..........................................................................................AAAGTAATTGCGGTTGC...............................................................................................................................................171.000.00---------------------------------1.00--------------------------------------------------
.........................................................................................AAAAGTAATTGCGGTTACTG.............................................................................................................................................201.000.00-1.00----------------------------------------------------------------------------------
.........................................................................................................................................................................................................TCATTGTAAAGGACTATAA..............................191.000.00-------------------------------------------------------------1.00----------------------
..........................................................................................AAAGTAATTGCGGTTTTTGCCAAG........................................................................................................................................2401.008.00------------------------------------------------1.00-----------------------------------
..................................................................................................................................................................................ACTTTTTTTTTTCTTTTTAAGGTT................................................241.000.00------------------------1.00-----------------------------------------------------------
..........................................................................................AAAGTAATTGCGGTTTTTGCCAAGA.......................................................................................................................................2501.008.00----------------------------1.00-------------------------------------------------------
..........................................................................................AAAGTAATTGCGGTTGCCA.............................................................................................................................................191.000.001.00-----------------------------------------------------------------------------------
........................................................................................CAAAAGTAATTGCGGTTTCGCC............................................................................................................................................221.000.00-----1.00------------------------------------------------------------------------------
..................................................................................................................................................................................ACTTTTTTTTTTCTTTTTACAGT.................................................231.000.00----------------------------------------1.00-------------------------------------------
......................................................TTCAGTTCTATTAAATAGTTATCA............................................................................................................................................................................241.000.00----------------1.00-------------------------------------------------------------------
.................................................................................................................................................................................................................AAGGACTCTGTTGAAGAAAATATGCTGAA............2911.001.00------------------------------------------1.00-----------------------------------------
.........................................................................................AAAAGTAATTGCGGTTGC...............................................................................................................................................181.000.001.00-----------------------------------------------------------------------------------
..................................................................................................................................................................................................................AGGACTCTGTTGAAGAAAATATGC................2411.001.00----------------------------------------------------------------1.00-------------------
.........................................................................................AAAAGTAATTGCGGTTTTTGCTAA.........................................................................................................................................2401.0053.00---------------------------------------------------------------------1.00--------------
............................................................................................................................................................................TACTTAACTTTTTTTTTTCTTTTTTTAG..................................................281.000.00-----------------1.00------------------------------------------------------------------
...............................................................................................................................................................................TTAACTTTTTTTTTTCTTTTCTAG...................................................241.000.00----1.00-------------------------------------------------------------------------------
.................................................................................................................................................................................AACTTTTTTTTTTCTTTTTACAG..................................................231.000.00----------------------------------------1.00-------------------------------------------
.....................................................................................GTGCAAAAGTAATTGCGGCTTA...............................................................................................................................................221.000.00--------------------------1.00---------------------------------------------------------
..............................................................................................................................................................................CTTAACTTTTTTTTTTCTTTTTAAAG..................................................2611.001.00-------------1.00----------------------------------------------------------------------
...............................................................................................................................................................................TTAACTTTTTTTTTTCTTTTAT.....................................................221.000.00-----------------1.00------------------------------------------------------------------
.........................................................................................AAAAGTAATTGCGGTTTCGGC............................................................................................................................................211.000.001.00-----------------------------------------------------------------------------------
................................................................................................................................................................................TAACTTTTTTTTTTCTTTAAT.....................................................211.000.00-----------------1.00------------------------------------------------------------------
.........................................................................................AAAAGTAATTGCGGTTTTT..............................................................................................................................................1901.001.00-------------------------1.00----------------------------------------------------------
.........................................................................................AAAAGTAATTGCGGTTTCGG.............................................................................................................................................201.000.00-----1.00------------------------------------------------------------------------------
.........................................................................................AAAAGTAATTGCGGTTTTTCG............................................................................................................................................2101.001.00-1.00----------------------------------------------------------------------------------
..................................................................................................................................................................................ACTTTTTTTTTTCTTTTTAAACAG................................................241.000.00-------------1.00----------------------------------------------------------------------
...............................................................................................................................................................................TTAACTTTTTTTTTTCTTTTAG.....................................................221.000.00-------------1.00----------------------------------------------------------------------
...............................................................................................................................................................................TTAACTTTTTTTTTTCTTTTTCTTG..................................................251.000.00-------------1.00----------------------------------------------------------------------
.............................................................................................GTAATTGCGGTTTTTGCCATT........................................................................................................................................2101.001.00--1.00---------------------------------------------------------------------------------
........................................................................................CAAAAGTAATTGCGGTTTGC..............................................................................................................................................201.000.00-1.00----------------------------------------------------------------------------------
..........................................................................................AAAGTAATTGCGGTTTTTGCGAAC........................................................................................................................................2401.0020.00-----------------------------------------------------1.00------------------------------
.............................................................................................................................................................................ACTTAACTTTTTTTTTTCTTTTCTAG...................................................261.000.00----1.00-------------------------------------------------------------------------------
................................................................................................................................................................................................................AAAGGACTCTGTTGAAGAA.......................1920.500.50-----------------------------------------------------------------------------------0.50
.................................................................................................................................................................................................................AAGGACTCTGTTGAAG.........................1640.250.25----------------------------------------------0.25-------------------------------------
..........................................................................................................................................................................ACTACTTAACTTTTTTTT..............................................................1850.200.20----------------0.20-------------------------------------------------------------------
..................................................................................................................................................................................ACTTTTTTTTTTCTTTTTAAAG..................................................2250.200.20----0.20-------------------------------------------------------------------------------

Antisense strand
TCGTACAGCCATATTCTTTATATAAGAAAACCATATTGGGTAAGGAAAGCAAAGTTCAGTTCTATTAAATAGTTATTATAGTTTGGTGCAAAAGTAATTGCGGTTTTTGCCATTAGGCAAATCTTTCATTTAGTTTTTTTAATAAAGATTTTAAATACTATGCCTTAAAAACTACTTAACTTTTTTTTTTCTTTTTAAAGTTCATTGTAAAGGACTCTGTTGAAGAAAATATGCTGAAAATACAAAACAA
.........................................................................................((((((......((((((((.....((((((((((((...((((.....)))).)))))))..........))))))))))))).....))))))..................................................................
....................................................................................85............................................................................................................195.....................................................
SizePerfect hitTotal NormPerfect NormSRR189786SRR189782DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR189784SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189787DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR343336GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR343337SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189785SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR343334SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR040010(GSM532895)
G529N. (cervix)		SRR189783SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029125(GSM416754)
U2OS. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR191419(GSM715529)
41genomic small RNA (size selected RNA from t. (breast)		SRR037936(GSM510474)
293cand1. (cell line)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040025(GSM532910)
G613T. (cervix)		SRR029127(GSM416756)
A549. (cell line)		SRR038854(GSM458537)
MM653. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)		TAX577579(Rovira)
total RNA. (breast)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038853(GSM458536)
MELB. (cell line)		SRR040024(GSM532909)
G613N. (cervix)		SRR040035(GSM532920)
G001T. (cervix)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
.......................................................................................CAAAAACCGCAATTACTTTTGC............................................................................................................................................. 22026.0026.00--3.00---8.003.005.002.001.003.00--------1.00---------------------------------------------------------------
........................................................................................CAAAAACCGCAATTACTTTTG............................................................................................................................................. 21014.0014.00--2.00---1.001.00-2.001.004.00---2.00-----------------------1.00--------------------------------------------
..........................................................................................AAAGTAATTGCGGTTTTTGCGA.......................................................................................................................................... 22013.000.003.003.00-1.00-6.00------------------------------------------------------------------------------
...........................................................................................AAGTAATTGCGGTTTTTGGC........................................................................................................................................... 2012.000.005.005.00-2.00--------------------------------------------------------------------------------
......................................................................................AAAAACCGCAATTACTTTTGCA.............................................................................................................................................. 22011.0011.00------3.002.002.00--1.00---2.00--------------------------------------------------------1.00-----------
.............................................................................................GTAATTGCGGTTTTTGCTTG......................................................................................................................................... 209.000.00-7.00-2.00--------------------------------------------------------------------------------
...........................................................................................AAGTAATTGCGGTTTTTGCTA.......................................................................................................................................... 217.000.00-------------------3.00--4.00-------------------------------------------------------------
..........................................................................................AAAGTAATTGCGGTTTTTGCGAA......................................................................................................................................... 2307.000.002.002.00-----------------2.00--1.00-------------------------------------------------------------
...........................................................................................AAGTAATTGCGGTTTTTGCTGA......................................................................................................................................... 227.000.001.00--2.00-4.00------------------------------------------------------------------------------
........................................................................................CAAAAGTAATTGCGGTTTTTATC........................................................................................................................................... 235.000.00-----------------------5.00------------------------------------------------------------
..........................................................................................AAAGTAATTGCGGTTTTTGGT........................................................................................................................................... 2105.000.001.003.00---1.00------------------------------------------------------------------------------
..........................................................................................AAAGTAATTGCGGTTTTTGGA........................................................................................................................................... 2105.000.00-4.00-1.00--------------------------------------------------------------------------------
...........................................................................................AAGTAATTGCGGTTTTTGCCTGA........................................................................................................................................ 2304.000.002.00----1.00----------1.00-------------------------------------------------------------------
........................................................................................AAAAACCGCAATTACTTTTG.............................................................................................................................................. 2004.004.00--1.00-----2.00------1.00--------------------------------------------------------------------
............................................................................................AGTAATTGCGGTTTTTGCCTG......................................................................................................................................... 214.000.00---2.00-------------------------2.00------------------------------------------------------
.......................................................................................AAAAACCGCAATTACTTTTGC.............................................................................................................................................. 2104.004.00--1.00-----2.00--1.00------------------------------------------------------------------------
...........................................................................................AAGTAATTGCGGTTTTTGGA........................................................................................................................................... 203.000.00-3.00----------------------------------------------------------------------------------
............................................................................................AGTAATTGCGGTTTTTGCTGC......................................................................................................................................... 213.000.003.00-----------------------------------------------------------------------------------
............................................................................................AGTAATTGCGGTTTTTGCTG.......................................................................................................................................... 203.000.00-1.00-1.00----------------------------1.00---------------------------------------------------
..........................................................................................AAAGTAATTGCGGTTTTTGCCGA......................................................................................................................................... 2303.000.003.00-----------------------------------------------------------------------------------
..........................................................................................AAAGTAATTGCGGTTTTTGCGGT......................................................................................................................................... 2303.000.00------------------------------------2.00---------------------------------------1.00-------
...........................................................................................AAGTAATTGCGGTTTTTGCCG.......................................................................................................................................... 213.000.00---3.00--------------------------------------------------------------------------------
...........................................................................................AAGTAATTGCGGTTTTTGCGC.......................................................................................................................................... 213.000.003.00-----------------------------------------------------------------------------------
............................................................................................AGTAATTGCGGTTTTTCTGC.......................................................................................................................................... 202.000.00---2.00--------------------------------------------------------------------------------
...........................................................................................AAGTAATTGCGGTTTTTGGAA.......................................................................................................................................... 212.000.001.00-----------------------------------------------------1.00-----------------------------
...........................................................................................AAGTAATTGCGGTTTTTGCA........................................................................................................................................... 202.000.00-2.00----------------------------------------------------------------------------------
...........................................................................................AAGTAATTGCGGTTTTTGCGA.......................................................................................................................................... 2102.000.001.001.00----------------------------------------------------------------------------------
............................................................................................AGTAATTGCGGTTTTCTCA........................................................................................................................................... 192.000.00-------------------1.00--1.00-------------------------------------------------------------
...........................................................................................AAGTAATTGCGGTTTTTGGATT......................................................................................................................................... 222.000.00------------------------------------------------------------1.00-----1.00-----------------
...........................................................................................AAGTAATTGCGGTTTTTCGC........................................................................................................................................... 202.000.002.00-----------------------------------------------------------------------------------
...........................................................................................AAGTAATTGCGGTTTTTGCGG.......................................................................................................................................... 2102.000.00-2.00----------------------------------------------------------------------------------
..........................................................................................AAAGTAATTGCGGTTTTTGCAA.......................................................................................................................................... 222.000.00-2.00----------------------------------------------------------------------------------
..........................................................................................AAAGTAATTGCGGTTTTTGGAA.......................................................................................................................................... 2202.000.002.00-----------------------------------------------------------------------------------
............................................................................................AGTAATTGCGGTTTTTCCTG.......................................................................................................................................... 202.000.00---2.00--------------------------------------------------------------------------------
.............................................................................................................................................................................................................TCTTCAACAGAGTCCTTTACA........................ 2111.001.00---------------------------------------------------------------------------------1.00--
............................................................................................CAAAAACCGCAATTACT............................................................................................................................................. 1701.001.00------1.00-----------------------------------------------------------------------------
......................................................................................CAAAAACCGCAATTACTTTTGCA............................................................................................................................................. 2301.001.00---------------1.00--------------------------------------------------------------------
.........................................................................................AAAAGTAATTGCGGTTTTCTCT........................................................................................................................................... 2201.000.001.00-----------------------------------------------------------------------------------
......................................CTGAACTTTGCTTTCCTTACC............................................................................................................................................................................................... 2111.001.00-------------------------------------------------------1.00----------------------------
.........................................................................................AAAAGTAATTGCGGTTTTTGCT........................................................................................................................................... 2201.000.00-----1.00------------------------------------------------------------------------------
...........................................................................................AAGTAATTGCGGTTTTTCG............................................................................................................................................ 191.000.00-1.00----------------------------------------------------------------------------------
.......................................................................................GCAAAAGTAATTGCGGTTTTTGTG........................................................................................................................................... 241.000.00----------------------------------1.00-------------------------------------------------
.............................................................................................GTAATTGCGGTTTTTGCTGC......................................................................................................................................... 201.000.001.00-----------------------------------------------------------------------------------
...........................................................................................AAGTAATTGCGGTTTTTGCTAC......................................................................................................................................... 221.000.00-----1.00------------------------------------------------------------------------------
...........................................................................................CAAAAACCGCAATTACTT............................................................................................................................................. 1801.001.00--------1.00---------------------------------------------------------------------------
...........................................................................................AAGTAATTGCGGTTTTGG............................................................................................................................................. 181.000.00-1.00----------------------------------------------------------------------------------
............................................................................................AGTAATTGCGGTTTTTCTAG.......................................................................................................................................... 201.000.00-1.00----------------------------------------------------------------------------------
...........................................................................................AAGTAATTGCGGTTTCCG............................................................................................................................................. 181.000.00---1.00--------------------------------------------------------------------------------
.........................................................................................AAAAGTAATTGCGGTTTTTGCCATTATCT.................................................................................................................................... 291.000.00-----------------------------------1.00------------------------------------------------
........................................................................................CAAAAGTAATTGCGGTTTTTACG........................................................................................................................................... 231.000.00-1.00----------------------------------------------------------------------------------
...........................................................................................AAGTAATTGCGGTTTTTGCCCGA........................................................................................................................................ 2301.000.001.00-----------------------------------------------------------------------------------
............................................................................................AGTAATTGCGGTTTTTGATTA......................................................................................................................................... 211.000.00-1.00----------------------------------------------------------------------------------
............................................................................................AGTAATTGCGGTTTTTGTTT.......................................................................................................................................... 201.000.00-1.00----------------------------------------------------------------------------------
............................................................................................AGTAATTGCGGTTTTTGGG........................................................................................................................................... 191.000.00-1.00----------------------------------------------------------------------------------
...........................................................................................AAGTAATTGCGGTTTTTGCTCC......................................................................................................................................... 221.000.001.00-----------------------------------------------------------------------------------
.........................................................................................................................................................................................TTTTTCTTTTTAAAGTCCTC............................................. 201.000.00-------------------------------------------------------------------------------1.00----
............................................................................................AGTAATTGCGGTTTTTCGAG.......................................................................................................................................... 201.000.00-1.00----------------------------------------------------------------------------------
...........................................................................................AAGTAATTGCGGTTTTTGCGA.......................................................................................................................................... 211.000.00---1.00--------------------------------------------------------------------------------
...........................................................................................AAGTAATTGCGGTTTTTCGG........................................................................................................................................... 201.000.00---1.00--------------------------------------------------------------------------------
............................................................................................AGTAATTGCGGTTTTTGCATG......................................................................................................................................... 211.000.00---1.00--------------------------------------------------------------------------------
..........................................................................................AAAGTAATTGCGGTTTTTGCGCT......................................................................................................................................... 2301.000.001.00-----------------------------------------------------------------------------------
.............................................................................................GTAATTGCGGTTTTTCTTG.......................................................................................................................................... 191.000.00---1.00--------------------------------------------------------------------------------
.............................................................................ATAGTTTGGTGCAAAAGCTTT........................................................................................................................................................ 211.000.00-------------------------------1.00----------------------------------------------------
....................................................................................GGTGCAAAAGTAATTGCGGTTTT............................................................................................................................................... 231.000.00------------------------------------------------------------------------------1.00-----
...........................................................................................AAGTAATTGCGGTTTTTGCG........................................................................................................................................... 201.000.00---1.00--------------------------------------------------------------------------------
..........................................................................................AAAGTAATTGCGGTTTTTGAGAA......................................................................................................................................... 2301.000.00-----------------------------1.00------------------------------------------------------
...........................................................................................AAGTAATTGCGGTTTTTGGCGC......................................................................................................................................... 221.000.00-----1.00------------------------------------------------------------------------------
............................................................................................AGTAATTGCGGTTTTTGCA........................................................................................................................................... 191.000.00-1.00----------------------------------------------------------------------------------
..........................................................................................AAAGTAATTGCGGTTTTTCGCC.......................................................................................................................................... 221.000.001.00-----------------------------------------------------------------------------------
...........................................................................................AAGTAATTGCGGTTTTTGGTAA......................................................................................................................................... 221.000.00-1.00----------------------------------------------------------------------------------
.........................................................................................CAAAAACCGCAATTACTTTT............................................................................................................................................. 2001.001.00---------------------------1.00--------------------------------------------------------
.........................................................................................AAAAACCGCAATTACTTTT.............................................................................................................................................. 1901.001.00-------1.00----------------------------------------------------------------------------
............................................................................................AGTAATTGCGGTTTTTGCTAG......................................................................................................................................... 211.000.00-1.00----------------------------------------------------------------------------------
..........................................................................................AAAGTAATTGCGGTTTTTGT............................................................................................................................................ 201.000.00-1.00----------------------------------------------------------------------------------
......................................................................................AAAACCGCAATTACTTTTGCA............................................................................................................................................... 2101.001.00---------------------------1.00--------------------------------------------------------
.............................................................................................GTAATTGCGGTTTTTCCTT.......................................................................................................................................... 191.000.00--------------1.00---------------------------------------------------------------------
.............................................................................................GTAATTGCGGTTTTTGCTAG......................................................................................................................................... 201.000.00-1.00----------------------------------------------------------------------------------
............................................................................................AGTAATTGCGGTTTTTGCTGG......................................................................................................................................... 211.000.00---1.00--------------------------------------------------------------------------------
..........................................................................................AAAGTAATTGCGGTTTTTGAGT.......................................................................................................................................... 2201.000.001.00-----------------------------------------------------------------------------------
..........................................................................................AAAGTAATTGCGGTTTTTGCGGA......................................................................................................................................... 2301.000.00-1.00----------------------------------------------------------------------------------
...................................................................................TGGTGCAAAAGTAATTGCGGTCA................................................................................................................................................ 231.000.00-------------------------------------------------------------------------1.00----------
..........................................................................................AAAGTAATTGCGGTTTTTCGA........................................................................................................................................... 211.000.00--------------------------------1.00---------------------------------------------------
...........................................................................................AAGTAATTGCGGTTTTTGCGG.......................................................................................................................................... 211.000.00---1.00--------------------------------------------------------------------------------
............................................................................................AGTAATTGCGGTTTTTGCCTGC........................................................................................................................................ 221.000.00-1.00----------------------------------------------------------------------------------
..........................................................................................AAAGTAATTGCGGTTTTTGCAT.......................................................................................................................................... 2201.000.00-1.00----------------------------------------------------------------------------------
....................................................................................GGTGCAAAAGTAATTGCGGTCT................................................................................................................................................ 221.000.00----------------------------------1.00-------------------------------------------------
............................................................................................AGTAATTGCGGTTTTTGCTA.......................................................................................................................................... 201.000.00---1.00--------------------------------------------------------------------------------
...........................................................................................AAGTAATTGCGGTTTTTGCCGC......................................................................................................................................... 221.000.00-----1.00------------------------------------------------------------------------------
.............................................................................................GTAATTGCGGTTTTTGATG.......................................................................................................................................... 191.000.00-1.00----------------------------------------------------------------------------------