ID: uc003esl.2_intron_16_0_chr3_138310799_r.5p
GENE: (1)
chr3:138312840-138313089-


(1)
AGO2.ip 		(15)
B-CELL 		(19)
BREAST 		(23)
CELL-LINE 		(6)
CERVIX 		(1)
FIBROBLAST 		(2)
HEART 		(2)
HELA 		(14)
LIVER 		(3)
OTHER 		(1)
RRP40.ip 		(11)
SKIN 		(3)
UTERUS 		(1)
XRN.ip

Sense strand
GCCTAACCTGGCCCGGCTGGCTGCTGGTGGGAGGCCGGCGACTGAGTAAGGTGAGTGGCTCTCGGGGCTCTCAGAGGCGTCGGCGTGAGCCCCTTCCCGGAGTACCCCGGACTTGACCTCACCTGGGCCTAAAAGTGGTCAGACTGACCCTTGTCGGGGAGGAGCCATCTGGGACAGGGTCGCGCCAATTAAAAATCCCTGCGTAAGGGTTTGGGGATCGGACAAAACTGCCTCCAGTCCCAGCTCCCCA
..............................................................((.(((((((((((((...(((....)))(((((((((.....(((((...((....)).))))).....(((.((((.....))))))).))))))))).))).)))))))....))).))..................................................................
.............................................................62........................................................................................................................184................................................................
SizePerfect hitTotal NormPerfect NormSRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR040016(GSM532901)
G645N. (cervix)		TAX577740(Rovira)
total RNA. (breast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		TAX577739(Rovira)
total RNA. (breast)		TAX577744(Rovira)
total RNA. (breast)		GSM532887(GSM532887)
G761N. (cervix)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		TAX577743(Rovira)
total RNA. (breast)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR040015(GSM532900)
G623T. (cervix)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR191410(GSM715520)
20genomic small RNA (size selected RNA from t. (breast)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR040030(GSM532915)
G013N. (cervix)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR191575(GSM715685)
85genomic small RNA (size selected RNA from t. (breast)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR189783SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR191434(GSM715544)
171genomic small RNA (size selected RNA from . (breast)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR040008(GSM532893)
G727N. (cervix)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577741(Rovira)
total RNA. (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343335SRR038860(GSM458543)
MM426. (cell line)		SRR040012(GSM532897)
G648N. (cervix)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR191445(GSM715555)
110genomic small RNA (size selected RNA from . (breast)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		TAX577453(Rovira)
total RNA. (breast)		SRR038856(GSM458539)
D11. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		GSM339995(GSM339995)
hues6NP. (cell line)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
...................................CGGCGACTGAGTAAGGTGAG...................................................................................................................................................................................................20122.0022.001.005.001.00---1.002.00--2.00-4.001.001.00----1.00--1.001.00-------------------------------------------------------------1.00---------------
...................................CGGCGACTGAGTAAGGTG.....................................................................................................................................................................................................18119.0019.002.002.00---2.001.00--4.001.00--1.002.00---1.00----------------2.00--------1.00--------------------------------------------------------
..................................................................GCTCTCAGAGGCGTCGGCG.....................................................................................................................................................................1918.008.004.00------------------1.00-2.00------------------------------------------------------1.00------------------------
..................................CCGGCGACTGAGTAAGGTGAG...................................................................................................................................................................................................2117.007.001.003.00---1.00--------------------------------------------------------------------1.00-----1.00--------------------
.................................GCCGGCGACTGAGTAAGGTG.....................................................................................................................................................................................................2017.007.001.00----1.001.00-------1.00-------------1.00-------1.00---------------------------1.00------------------------------------
..................................CCGGCGACTGAGTAAGGTG.....................................................................................................................................................................................................1916.006.00-------1.001.001.001.00-----------1.00-----------1.00------------------------------------------------------------------
.................................GCCGGCGACTGAGTAAGG.......................................................................................................................................................................................................1816.006.00----1.00---2.00-------------------------1.00-1.00-----------------------------------1.00----------------------------
.....................................GCGACTGAGTAAGGTGAG...................................................................................................................................................................................................1815.005.00----1.00-----1.00-1.00----------1.00-----1.00-----------------------------------------------------------------------
............................................................CTCGGGGCTCTCAGAGGCGT..........................................................................................................................................................................2015.005.00--1.002.00-1.00-----------------------------------1.00-----------------------------------------------------------
.....................................GCGACTGAGTAAGGTGAGTGGCT..............................................................................................................................................................................................2315.005.00-----2.00-2.00----------1.00----------------------------------------------------------------------------------
.................................GCCGGCGACTGAGTAAGGT......................................................................................................................................................................................................1915.005.00--1.00---1.00-----------------------1.00-1.00-------------------1.00------------------------------------------------
..................................................................GCTCTCAGAGGCGTCGGCGTG...................................................................................................................................................................2114.004.00----1.00--------------------------------1.00-----1.00----------------1.00----------------------------------------
...................................CGGCGACTGAGTAAGGTGAGTGG................................................................................................................................................................................................2314.004.00------2.00------------1.00-----1.00---------------------------------------------------------------------------
................................................AGGTGAGTGGCTCTCGGGG.......................................................................................................................................................................................1914.004.00-----1.00--3.00--------------------------------------------------------------------------------------------
..................................CCGGCGACTGAGTAAGGT......................................................................................................................................................................................................1814.004.002.00---------1.00----------------------------1.00-------------------------------------------------------------
...................................................................CTCTCAGAGGCGTCGGCGTG...................................................................................................................................................................2013.003.00-2.00------1.00--------------------------------------------------------------------------------------------
..................................CCGGCGACTGAGTAAGGTGA....................................................................................................................................................................................................2013.003.00---------------3.00-------------------------------------------------------------------------------------
.................................GCCGGCGACTGAGTAAGGTGA....................................................................................................................................................................................................2113.003.00----1.00------------------------------------------1.00-----------------------------------------1.00-----------
..............................................................................GTCGGCGTGAGCCCCTTCCC........................................................................................................................................................2013.003.00---3.00-------------------------------------------------------------------------------------------------
......................................CGACTGAGTAAGGTGAGTGG................................................................................................................................................................................................2013.003.00-1.00-----------1.00------1.00--------------------------------------------------------------------------------
...................................CGGCGACTGAGTAAGGTGAGT..................................................................................................................................................................................................2113.003.00---------------------1.00--------------------------1.00------------------------------1.00---------------------
...............................................AAGGTGAGTGGCTCTCGG.........................................................................................................................................................................................1813.003.00-------------------------------------------------1.00--------1.00---------1.00--------------------------------
...............................................AAGGTGAGTGGCTCTCGGG........................................................................................................................................................................................1913.003.00-----------1.00-------------------------1.00---------------------------------------------1.00-----------------
................................................................GGGCTCTCAGAGGCGTCGGCG.....................................................................................................................................................................2113.003.00--3.00--------------------------------------------------------------------------------------------------
........................................ACTGAGTAAGGTGAGTGG................................................................................................................................................................................................1813.003.00----------------------------------------1.00---------1.00------------------------------------------1.00-------
..........................................................CTCTCGGGGCTCTCAGAG..............................................................................................................................................................................1813.003.003.00----------------------------------------------------------------------------------------------------
...................................CGGCGACTGAGTAAGGT......................................................................................................................................................................................................1713.003.00-------------------------1.00------------1.00------------1.00-------------------------------------------------
.....................................GCGACTGAGTAAGGTGAGTGG................................................................................................................................................................................................2113.003.001.00---1.00----1.00-------------------------------------------------------------------------------------------
...................................................................CTCTCAGAGGCGTCGGCG.....................................................................................................................................................................1813.003.001.00-----1.00--------------------1.00-------------------------------------------------------------------------
..............................................................CGGGGCTCTCAGAGGCGTC.........................................................................................................................................................................1922.502.50---2.50-------------------------------------------------------------------------------------------------
...............................AGGCCGGCGACTGAGTAA.........................................................................................................................................................................................................1812.002.00-----1.00---------------------------------------------------------------------------1.00-------------------
............................GGGAGGCCGGCGACTGAGTA..........................................................................................................................................................................................................2012.002.00-----------------2.00-----------------------------------------------------------------------------------
.......................................................TGGCTCTCGGGGCTCTCAGA...............................................................................................................................................................................2012.002.00---2.00-------------------------------------------------------------------------------------------------
..............................GAGGCCGGCGACTGAGTA..........................................................................................................................................................................................................1812.002.00----2.00------------------------------------------------------------------------------------------------
......................................................GTGGCTCTCGGGGCTCTCAGAGGC............................................................................................................................................................................2412.002.00----------------------------------------------1.00-----------------------------------1.00------------------
...............................................................................................................................................................AGGAGCCATCTGGGACAGGGT......................................................................2112.002.00--2.00--------------------------------------------------------------------------------------------------
.....................................GCGACTGAGTAAGGTGAGTG.................................................................................................................................................................................................2012.002.00----------1.00------------------1.00-----------------------------------------------------------------------
...............................AGGCCGGCGACTGAGTAAGG.......................................................................................................................................................................................................2012.002.00-------------1.00----------------------------1.00----------------------------------------------------------
........................................ACTGAGTAAGGTGAGTGGCT..............................................................................................................................................................................................2012.002.00-1.00----------------------------------------------------------------------------------1.00----------------
.................................GCCGGCGACTGAGTAAGGTGAG...................................................................................................................................................................................................2212.002.00-----------------1.00------------1.00----------------------------------------------------------------------
....................................GGCGACTGAGTAAGGTGAG...................................................................................................................................................................................................1912.002.001.00-------------1.00--------------------------------------------------------------------------------------
...................................CGGCGACTGAGTAAGGTGA....................................................................................................................................................................................................1912.002.00----2.00------------------------------------------------------------------------------------------------
..............................................................CGGGGCTCTCAGAGGC............................................................................................................................................................................1621.501.50----------------1.50------------------------------------------------------------------------------------
......................GCTGGTGGGAGGCCGGT...................................................................................................................................................................................................................171.000.00------------------------------------------------------1.00----------------------------------------------
....................................GGCGACTGAGTAAGGTGAAAAA................................................................................................................................................................................................221.000.00-------1.00---------------------------------------------------------------------------------------------
.......................................................TGGCTCTCGGGGCTCTCAGAGG.............................................................................................................................................................................2211.001.00-------------------------------------------------------------------------------------------1.00---------
.............................................................TCGGGGCTCTCAGAGGC............................................................................................................................................................................1711.001.00------------------------1.00----------------------------------------------------------------------------
...................................CGGCGACTGAGTAAGGTGAGTGGCT..............................................................................................................................................................................................2511.001.00-----1.00-----------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................GGTTTGGGGATCGGACAA.........................1811.001.00---------------1.00-------------------------------------------------------------------------------------
.............................................................................CGTCGGCGTGAGCCCCCC...........................................................................................................................................................181.000.00------1.00----------------------------------------------------------------------------------------------
..............................GAGGCCGGCGACTGAGTAAGGTA.....................................................................................................................................................................................................231.000.00-----------------------------------------------------------1.00-----------------------------------------
..................................................................GCTCTCAGAGGCGTCGGCGT....................................................................................................................................................................2011.001.00-----------------------------------------------------------------------------1.00-----------------------
........................................ACTGAGTAAGGTGAGTGGCTCT............................................................................................................................................................................................2211.001.00----1.00------------------------------------------------------------------------------------------------
..........................GTGGGAGGCCGGCGACTG..............................................................................................................................................................................................................1811.001.00--------------------------1.00--------------------------------------------------------------------------
...................................CGGCGACTGAGTAAGGTAAG...................................................................................................................................................................................................2011.003.00---------------------------------------------------------------1.00-------------------------------------
.................TGGCTGCTGGTGGGAGGCCGGCGAC................................................................................................................................................................................................................2511.001.00--------------------------------------------------------------------------------------------1.00--------
.............................................GTAAGGTGAGTGGCTCTCGGG........................................................................................................................................................................................2111.001.00--------------------1.00--------------------------------------------------------------------------------
.......CTGGCCCGGCTGGCTGCTGG...............................................................................................................................................................................................................................2011.001.00-----------1.00-----------------------------------------------------------------------------------------
...................................CGGCGACTGAGTAAGGTGAGTGGC...............................................................................................................................................................................................2411.001.00---------------------------------------------------------1.00-------------------------------------------
.........................................................GCTCTCGGGGCTCTCAGAGGCGT..........................................................................................................................................................................2311.001.00-----------------------------------------------------------------------1.00-----------------------------
..........................GTGGGAGGCCGGCGACTGA.............................................................................................................................................................................................................1911.001.00---------------------------------------------------------------------1.00-------------------------------
...............................AGGCCGGCGACTGAGTAAGGTG.....................................................................................................................................................................................................2211.001.00-------------------------------------------------------------------1.00---------------------------------
................................................AGGTGAGTGGCTCTCGGG........................................................................................................................................................................................1811.001.00---------------------------------------1.00-------------------------------------------------------------
............................................................................................................................................................................................................AAGGGTTTGGGGATCGG.............................1711.001.00-----------1.00-----------------------------------------------------------------------------------------
......................................CGACTGAGTAAGGTGAGTGGCT..............................................................................................................................................................................................2211.001.00--------------------------------1.00--------------------------------------------------------------------
..................................CCGGCGACTGAGTAAGATG.....................................................................................................................................................................................................191.000.00-------------1.00---------------------------------------------------------------------------------------
............................................................CTCGGGGCTCTCAGAGGCG...........................................................................................................................................................................1911.001.00-----------1.00-----------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................ACAAAACTGCCTCCAATC...........181.000.00------------------------------------------------------------------------------1.00----------------------
...............................................AAGGTGAGTGGCTCTCGGGG.......................................................................................................................................................................................2011.001.00--1.00--------------------------------------------------------------------------------------------------
....................CTGCTGGTGGGAGGCCGGC...................................................................................................................................................................................................................1911.001.00-------------------------------------------------------------------------1.00---------------------------
..............................................................CGGGGCTCTCAGAGGCGT..........................................................................................................................................................................1821.001.00---0.50---------------------------------------------------------------------------------------------0.50---
..................................CCGGCGACTGAGTAAGGTGAGAA.................................................................................................................................................................................................2311.007.00--------------------------------------1.00--------------------------------------------------------------
......................GCTGGTGGGAGGCCGGCGACTGAGTAAGGTGAGT..................................................................................................................................................................................................3411.001.00-------------------------------1.00---------------------------------------------------------------------
...........CCCGGCTGGCTGCTGGTGGGAGGC.......................................................................................................................................................................................................................2411.001.00------------------------1.00----------------------------------------------------------------------------
.....................................................................CTCAGAGGCGTCGGCGTGAGCC...............................................................................................................................................................2211.001.00-----------1.00-----------------------------------------------------------------------------------------
...................................CGGCGACTGAGTAAGGTGAGTGGTT..............................................................................................................................................................................................2511.004.00------------------1.00----------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................CAGTCCCAGCTCCCCGG171.000.00----------------------------------------------------------------------------------------------1.00------
.........................................................GCTCTCGGGGCTCTCAGAGGCG...........................................................................................................................................................................2211.001.00--------------------1.00--------------------------------------------------------------------------------
.....................................GCGACTGAGTAAGGTGA....................................................................................................................................................................................................1711.001.00--------------------------------------------------------------------------------------1.00--------------
.....................................GCGACTGAGTAAGGTGAGTGGAT..............................................................................................................................................................................................2311.003.00--------------------------------------------------------1.00--------------------------------------------
.....................................................................CTCAGAGGCGTCGGCGTG...................................................................................................................................................................1811.001.00------------------------------------------------------------------------------------------1.00----------
......................................................................................................................................................................................................CTGCGTAAGGGTTTGGGGAT................................2011.001.00-----------1.00-----------------------------------------------------------------------------------------
...........................................................................................................................................................................................................TAAGGGTTTGGGGATTACA............................191.000.00--------------------------------------------------------------1.00--------------------------------------
............................GGGAGGCCGGCGACTGTTT...........................................................................................................................................................................................................191.000.00--------------------------1.00--------------------------------------------------------------------------
........................................................................................................................................................................................................................ATCGGACAAAACTGCCTC................1811.001.00----------------------------1.00------------------------------------------------------------------------
......................................CGACTGAGTAAGGTGAG...................................................................................................................................................................................................1711.001.00-------------------------------------------------------1.00---------------------------------------------
..........................................................................AGGCGTCGGCGTGAGCCCCT............................................................................................................................................................2011.001.00----1.00------------------------------------------------------------------------------------------------
..CTAACCTGGCCCGGCTGG......................................................................................................................................................................................................................................1811.001.00----------------------------------------1.00------------------------------------------------------------
..................................CCGGCGACTGAGTAAGGTGAGTGGCTCT............................................................................................................................................................................................2811.001.00---------------------------1.00-------------------------------------------------------------------------
.......CTGGCCCGGCTGGCTGCT.................................................................................................................................................................................................................................1811.001.00---------------------------------------------------------------------------------------1.00-------------
...................................CGGCGACTGAGTAAGGTGCG...................................................................................................................................................................................................2011.0019.00---------------------------------------------1.00-------------------------------------------------------
.............................................GTAAGGTGAGTGGCTCTCCG.........................................................................................................................................................................................201.000.00--1.00--------------------------------------------------------------------------------------------------
............................................................CTCGGGGCTCTCAGAGGCGTC.........................................................................................................................................................................2111.001.00---------1.00-------------------------------------------------------------------------------------------
............................................................................................................................................................................................................AAGGGTTTGGGGATCGGACAAAACTGC...................2711.001.00----------------1.00------------------------------------------------------------------------------------
.........................................CTGAGTAAGGTGAGTGGCT..............................................................................................................................................................................................1911.001.00-------------------------------------------------------------1.00---------------------------------------
..............................................................................................................................................................................................................GGGTTTGGGGATCGGC............................161.000.00----------------------------------------------------------------------------------------1.00------------
...............................AGGCCGGCGACTGAGTAAG........................................................................................................................................................................................................1911.001.00-------1.00---------------------------------------------------------------------------------------------
.........................GGTGGGAGGCCGGCGAC................................................................................................................................................................................................................1711.001.00---------------------------------1.00-------------------------------------------------------------------
........................TGGTGGGAGGCCGGCGA.................................................................................................................................................................................................................1711.001.00---------------------------------1.00-------------------------------------------------------------------
..........................GTGGGAGGCCGGCGACTGAAAA..........................................................................................................................................................................................................2211.001.00-----------------------------------------------------------------1.00-----------------------------------
.........................................CTGAGTAAGGTGAGTGGCTCT............................................................................................................................................................................................2111.001.00---------------------------------------------------------------------------1.00-------------------------
...................................CGGCGACTGAGTAAGGTGAAA..................................................................................................................................................................................................2111.002.00-------1.00---------------------------------------------------------------------------------------------
......................................CGACTGAGTAAGGTGAGT..................................................................................................................................................................................................1811.001.00-----------------------------------------------------1.00-----------------------------------------------
....................CTGCTGGTGGGAGGCGGC....................................................................................................................................................................................................................181.000.00------------------------------------------------------------------1.00----------------------------------
..............................................................CGGGGCTCTCAGAGGCGTCGGCG.....................................................................................................................................................................2311.001.00--1.00--------------------------------------------------------------------------------------------------
........................................ACTGAGTAAGGTGAGTGGC...............................................................................................................................................................................................1911.001.00--1.00--------------------------------------------------------------------------------------------------
.....................................GCGACTGAGTAAGGTGAGT..................................................................................................................................................................................................1911.001.00-------------------------------1.00---------------------------------------------------------------------
...........................................................................GGCGTCGGCGTGAGCCC..............................................................................................................................................................1711.001.00----------------1.00------------------------------------------------------------------------------------
..............................................................CGGGGCTCTCAGAGGCG...........................................................................................................................................................................1720.500.50-----------------------------------------0.50-----------------------------------------------------------
.............CGGCTGGCTGCTGGTGGGA..........................................................................................................................................................................................................................1920.500.50------------------------------------------------------------------------------------------------0.50----
...............................AGGCCGGCGACTGAG............................................................................................................................................................................................................1520.500.50-----------------------------------------------------------------------------------------------0.50-----
................CTGGCTGCTGGTGGGAGGCC......................................................................................................................................................................................................................2040.250.25----------------------0.25------------------------------------------------------------------------------
.................TGGCTGCTGGTGGGAGGC.......................................................................................................................................................................................................................1880.250.25------------0.25----------------------------------------------------------------------------------------
................CTGGCTGCTGGTGGGAGG........................................................................................................................................................................................................................1880.120.12----------------------------------------------------------------------------------------------------0.12

Antisense strand
GCCTAACCTGGCCCGGCTGGCTGCTGGTGGGAGGCCGGCGACTGAGTAAGGTGAGTGGCTCTCGGGGCTCTCAGAGGCGTCGGCGTGAGCCCCTTCCCGGAGTACCCCGGACTTGACCTCACCTGGGCCTAAAAGTGGTCAGACTGACCCTTGTCGGGGAGGAGCCATCTGGGACAGGGTCGCGCCAATTAAAAATCCCTGCGTAAGGGTTTGGGGATCGGACAAAACTGCCTCCAGTCCCAGCTCCCCA
..............................................................((.(((((((((((((...(((....)))(((((((((.....(((((...((....)).))))).....(((.((((.....))))))).))))))))).))).)))))))....))).))..................................................................
.............................................................62........................................................................................................................184................................................................
SizePerfect hitTotal NormPerfect NormSRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR040016(GSM532901)
G645N. (cervix)		TAX577740(Rovira)
total RNA. (breast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		TAX577739(Rovira)
total RNA. (breast)		TAX577744(Rovira)
total RNA. (breast)		GSM532887(GSM532887)
G761N. (cervix)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		TAX577743(Rovira)
total RNA. (breast)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR040015(GSM532900)
G623T. (cervix)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR191410(GSM715520)
20genomic small RNA (size selected RNA from t. (breast)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR040030(GSM532915)
G013N. (cervix)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR191575(GSM715685)
85genomic small RNA (size selected RNA from t. (breast)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR189783SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR191434(GSM715544)
171genomic small RNA (size selected RNA from . (breast)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR040008(GSM532893)
G727N. (cervix)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577741(Rovira)
total RNA. (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343335SRR038860(GSM458543)
MM426. (cell line)		SRR040012(GSM532897)
G648N. (cervix)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR191445(GSM715555)
110genomic small RNA (size selected RNA from . (breast)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		TAX577453(Rovira)
total RNA. (breast)		SRR038856(GSM458539)
D11. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		GSM339995(GSM339995)
hues6NP. (cell line)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
.................................................................................................................................................................................................................................CTGGGACTGGAGGCAGTT....... 1811.001.00---1.00-------------------------------------------------------------------------------------------------
.......................................................................................................................................................TGTCGGGGAGGAGCCACTAG............................................................................... 201.000.00----------------------------------------------------------------------1.00------------------------------
.....................................................................................................................................................................................................................................GGAGCTGGGACTGGAGGC... 1830.330.33--------------------------------------------------------------------------------------------------0.33--
............................................................TCTGAGAGCCCCGAG............................................................................................................................................................................... 1560.170.17---------------------------------------------------------------------------------------------------0.17-
............................................GCCACTCACCTTACT............................................................................................................................................................................................... 1570.140.14-----------------------0.14-----------------------------------------------------------------------------