ID: uc003erc.1_intron_18_0_chr3_136237258_r.3p
GENE: STAG1(9)
chr3:136237208-136237457-


(1)
B-CELL 		(16)
BREAST 		(6)
CELL-LINE 		(1)
CERVIX 		(1)
FIBROBLAST 		(4)
HEART 		(1)
KIDNEY 		(4)
LIVER 		(2)
OTHER 		(15)
SKIN 		(3)
UTERUS 		(1)
XRN.ip

Sense strand
ACTTGTATAAAATGTGAGACATAGCAGTCACCTACCCTTCAACAAAGCACAGAGGGCTTGCTGAGAACTTAATTCCAGGCTGGACAACAATTATCCCTCTTTTCAAGGACATTTTGTTCTCATCTTTGCCCTCTTCTTATTTTTAATGGTATATGTACGAGGAATAGATTAAAAGATAATCATTTTTATTCACTTTGCAGGACAAGTCTTGGGGACTAGATAAAATGGGCAGGAACATTTAATCCTCTGC
.............................................................(((((((..(((((((((..(((.........)))..))).....))).)))..))))))).......((((....((((......)))).......))))....(((((.....))))).....................................................................
........................................................57..........................................................................................................................181...................................................................
SizePerfect hitTotal NormPerfect NormSRR189785SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189782SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189784SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577740(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR343334SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191451(GSM715561)
177genomic small RNA (size selected RNA from . (breast)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR191529(GSM715639)
131genomic small RNA (size selected RNA from . (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR191519(GSM715629)
86genomic small RNA (size selected RNA from t. (breast)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191570(GSM715680)
56genomic small RNA (size selected RNA from t. (breast)		SRR191418(GSM715528)
40genomic small RNA (size selected RNA from t. (breast)		TAX577590(Rovira)
total RNA. (breast)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343335TAX577579(Rovira)
total RNA. (breast)		SRR191505(GSM715615)
139genomic small RNA (size selected RNA from . (breast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191453(GSM715563)
179genomic small RNA (size selected RNA from . (breast)		SRR040043(GSM532928)
G428T. (cervix)		TAX577738(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR191458(GSM715568)
28genomic small RNA (size selected RNA from t. (breast)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
.............................................................TGAGAACTTAATTCCATAGG.........................................................................................................................................................................2025.000.00-6.00-4.00--2.002.00--------1.00-1.001.00-----1.001.001.001.00---------------1.00----1.001.00---1.00-----
.............................................................TGAGAACTTAATTCCATGGG.........................................................................................................................................................................2015.000.00-6.00------1.00-2.00---1.00-----1.00--1.00------1.00--------1.00------------------1.00-
.............................................................TGAGAACTTAATTCCATAG..........................................................................................................................................................................1910.000.002.00-5.001.00-----------------1.00-------------------------1.00------------
.............................................................TGAGAACTTAATTCCATGG..........................................................................................................................................................................199.000.00-5.00---1.00-----1.00-1.00--------1.00-------------------------------------
..............................................................................................................................................................GAGGAATAGATTAAACTGT.........................................................................197.000.007.00-----------------------------------------------------------
.............................................................TGAGAACTTAATTCCATA...........................................................................................................................................................................187.000.00-1.00---1.00-----------------------1.00-------1.00-------1.001.00---------1.00---
..........................................................................................................................................................GTACGAGGAATAGATTAAACTGT.........................................................................237.000.007.00-----------------------------------------------------------
.............................................................................................................................................................CGAGGAATAGATTAAACTGT.........................................................................206.000.006.00-----------------------------------------------------------
.............................................................TGAGAACTTAATTCCATG...........................................................................................................................................................................183.000.00-----------1.00-----1.00----------------------1.00-------------------
.............................................................TGAGAACTTAATTCCATATG.........................................................................................................................................................................203.000.00-1.00-------------------------------1.00--------------1.00-----------
..............................................................................................................................................................GAGGAATAGATTAAACTGA.........................................................................192.000.002.00-----------------------------------------------------------
................................................................................................................................................AATGGTATATGTACGAG.........................................................................................1712.002.00------------2.00-----------------------------------------------
..................................................AGAGGGCTTGCTGAGAAC......................................................................................................................................................................................1821.501.50----------------0.50--------------------------------------1.00----
............................................AAGCACAGAGGGCTTGCTGAGAACCT....................................................................................................................................................................................261.000.00---------1.00--------------------------------------------------
..........................................................................................................................................................................AAAAGATAATCATTTCGTG.............................................................191.000.00-------------------------------1.00----------------------------
.................................................................................................TCTTTTCAAGGACATTTTGTTC...................................................................................................................................2211.001.00--------------------------------1.00---------------------------
.............................................................TGAGAACTTAATTCCATGC..........................................................................................................................................................................191.000.00-1.00----------------------------------------------------------
.............................................................TGAGAACTTAATTCCATGT..........................................................................................................................................................................191.000.00-----1.00------------------------------------------------------
..................................................................................................CTTTTCAAGGACATTTTGTTC...................................................................................................................................2111.001.00---------------------------------------------------1.00--------
.............................................................TGAGAACTTAATTCCAGAGG.........................................................................................................................................................................201.000.00------1.00-----------------------------------------------------
.............................................................TGAGAACTTAATTCCATTG..........................................................................................................................................................................191.000.00--1.00---------------------------------------------------------
.....................................................................................................................................................................................ATTTTTATTCACTTTGCATAAG...............................................221.000.00----1.00-------------------------------------------------------
.............................................................TGAGAACTTAATTCCATAGT.........................................................................................................................................................................201.000.00--1.00---------------------------------------------------------
..................................................................................................CTTTTCAAGGACATTTTGTTCTCA................................................................................................................................2411.001.00--------1.00---------------------------------------------------
.............................................................TGAGAACTTAATTCCATAGA.........................................................................................................................................................................201.000.00-1.00----------------------------------------------------------
..........................................................................................................................................................GTACGAGGAATAGATTAAACTGC.........................................................................231.000.001.00-----------------------------------------------------------
.............................................................TGAGAACTTAATTCCATGTG.........................................................................................................................................................................201.000.00-1.00----------------------------------------------------------
............................................AAGCACAGAGGGCTTGCTGAGAACCC....................................................................................................................................................................................261.000.00---------1.00--------------------------------------------------
.............................................................................................................................................................CGAGGAATAGATTAAACGGA.........................................................................201.000.001.00-----------------------------------------------------------
.............................................................TGAGAACTTAATTCCATAAG.........................................................................................................................................................................201.000.00--1.00---------------------------------------------------------
............................................................................................................................................................ACGAGGAATAGATTAAACTGA.........................................................................211.000.001.00-----------------------------------------------------------
......................................................................................................................................................................................TTTTTATTCACTTTGCAGGACA..............................................2211.001.00---------------1.00--------------------------------------------
...............................................................................................................................................................................ATAATCATTTTTATTCACTTTGCAGGACAAGTC..........................................3311.001.00---------------------------------------------------------1.00--
..............................................................GAGAACTTAATTCCATGG..........................................................................................................................................................................181.000.00-----------------------------------1.00------------------------
.............................................................................................................................................................CGAGGAATAGATTAAACTGA.........................................................................201.000.001.00-----------------------------------------------------------
..............................................................GAGAACTTAATTCCATGGG.........................................................................................................................................................................191.000.00--------------1.00---------------------------------------------
.............................................................TGAGAACTTAATTCCGAAC..........................................................................................................................................................................191.000.00------------------------------------------1.00-----------------
.............................................................TGAGAACTTAATTCCACAT..........................................................................................................................................................................191.000.001.00-----------------------------------------------------------
................................................................................................................................................AATGGTATATGTACGAGGAATAGATTAAA.............................................................................2911.001.00------------------------------------1.00-----------------------
..........................................................................................................................................................GTACGAGGAATAGATTAACTGT..........................................................................221.000.001.00-----------------------------------------------------------
....................................................................................................................................................................................CATTTTTATTCACTTTGCATAAG...............................................231.000.00----1.00-------------------------------------------------------
..............................................................................................................................................................GAGGAATAGATTAAAATGT.........................................................................191.000.00----------------------------------1.00-------------------------
....................................................................................................................................................................................CATTTTTATTCACTTTGCATA.................................................211.000.00----1.00-------------------------------------------------------
..........................................................................................................................................................GTACGAGGAATAGATTAAATTGT.........................................................................231.000.001.00-----------------------------------------------------------
.....................................TTCAACAAAGCACAGAGGTATG...............................................................................................................................................................................................221.000.00------------------------1.00-----------------------------------
....................................CTTCAACAAAGCACAGAGGGCTTGCTGA..........................................................................................................................................................................................2811.001.00--------------------------------------1.00---------------------
.............................................................................................................................................................CGAGGAATAGATTAAAATGT.........................................................................201.000.001.00-----------------------------------------------------------
..................................................AGAGGGCTTGCTGAGAACTTAAT.................................................................................................................................................................................2311.001.00-------------1.00----------------------------------------------
..........................................................................................................................................................GTACGAGGAATAGATTAAACTGG.........................................................................231.000.001.00-----------------------------------------------------------
.............................................................TGAGAACTTAATTCCCA............................................................................................................................................................................171.000.00-----------------------------------------1.00------------------
............................................AAGCACAGAGGGCTTGCTGAGAA.......................................................................................................................................................................................2311.001.00---------------1.00--------------------------------------------
..................................................................................................................................................................................................TTGCAGGACAAGTCTTGGGGACTAGA..............................2611.001.00-------------------------------------------1.00----------------
.....................................................GGGCTTGCTGAGAACTTAATT................................................................................................................................................................................2111.001.00-----------------------------------------------------1.00------

Antisense strand
ACTTGTATAAAATGTGAGACATAGCAGTCACCTACCCTTCAACAAAGCACAGAGGGCTTGCTGAGAACTTAATTCCAGGCTGGACAACAATTATCCCTCTTTTCAAGGACATTTTGTTCTCATCTTTGCCCTCTTCTTATTTTTAATGGTATATGTACGAGGAATAGATTAAAAGATAATCATTTTTATTCACTTTGCAGGACAAGTCTTGGGGACTAGATAAAATGGGCAGGAACATTTAATCCTCTGC
.............................................................(((((((..(((((((((..(((.........)))..))).....))).)))..))))))).......((((....((((......)))).......))))....(((((.....))))).....................................................................
........................................................57..........................................................................................................................181...................................................................
SizePerfect hitTotal NormPerfect NormSRR189785SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189782SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189784SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577740(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR343334SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191451(GSM715561)
177genomic small RNA (size selected RNA from . (breast)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR191529(GSM715639)
131genomic small RNA (size selected RNA from . (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR191519(GSM715629)
86genomic small RNA (size selected RNA from t. (breast)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191570(GSM715680)
56genomic small RNA (size selected RNA from t. (breast)		SRR191418(GSM715528)
40genomic small RNA (size selected RNA from t. (breast)		TAX577590(Rovira)
total RNA. (breast)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343335TAX577579(Rovira)
total RNA. (breast)		SRR191505(GSM715615)
139genomic small RNA (size selected RNA from . (breast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191453(GSM715563)
179genomic small RNA (size selected RNA from . (breast)		SRR040043(GSM532928)
G428T. (cervix)		TAX577738(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR191458(GSM715568)
28genomic small RNA (size selected RNA from t. (breast)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
....................................................................................................................................................................TAGATTAAAAGATAATCC.................................................................... 181.000.00----------------------------------------------------1.00-------
......................................................................................................................AAGAGGGCAAAGATGAG................................................................................................................... 1720.500.50-----------------------------------------------------------0.50