ID: uc003eqj.2_intron_1_0_chr3_134201774_r.5p
GENE: (1)
chr3:134204343-134204592-


(1)
AGO2.ip 		(15)
B-CELL 		(12)
BREAST 		(33)
CELL-LINE 		(1)
CERVIX 		(2)
FIBROBLAST 		(2)
HELA 		(7)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(15)
SKIN 		(1)
TESTES 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
ACATCCTGCCTGAGGCAGGAAGCCGCAGCTGAGGGACGGCCTGTCGTACGGTGCGGATGGTGGTGGCCTGCGAGGCTCATTTCTAGCAAGGAACAAGGCTTTCCCGCTTTGATTTTATAAATATTATGTTTACAAAGCTGTAATATATAGAAATTGATAAGACGTGTCCCTGTCCCTGGAAACGCAGGCACCGCGTGTTTGGAAAGACATTCATCTGGGCTGTTTGACAGACTCCCCAGTTGGTGCCATG
...................................................(((...(((..((((((.....))).)))..)))))).....((((((......))))))...........................................................................................................................................
..................................................51....................................................................................137...............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR189784DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		GSM339994(GSM339994)
hues6. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		GSM416733(GSM416733)
HEK293. (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR189785SRR037931(GSM510469)
293GFP. (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR191570(GSM715680)
56genomic small RNA (size selected RNA from t. (breast)		SRR038854(GSM458537)
MM653. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR191417(GSM715527)
39genomic small RNA (size selected RNA from t. (breast)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR343335TAX577579(Rovira)
total RNA. (breast)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR038862(GSM458545)
MM472. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR343337SRR040015(GSM532900)
G623T. (cervix)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191413(GSM715523)
28genomic small RNA (size selected RNA from t. (breast)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
....................................................GCGGATGGTGGTGGCCTG....................................................................................................................................................................................18121.0021.00-16.002.00---1.00-1.00-------------1.00-------------------------------------------------------------------------
...............................................................................................................ATTTTATAAATATTATGTTTACAAAG.................................................................................................................26116.0016.0013.00---------3.00-------------------------------------------------------------------------------------
...............................................................................................................ATTTTATAAATATTATGTTTACAA...................................................................................................................24113.0013.0013.00-----------------------------------------------------------------------------------------------
...................................ACGGCCTGTCGTACGGTG.....................................................................................................................................................................................................18112.0012.00-3.00--1.003.00--1.00---------------------------------------1.00---------1.00-------1.00----------------------1.00------
..............................................TACGGTGCGGATGGTGGTGGCAA.....................................................................................................................................................................................236.000.00-------6.00----------------------------------------------------------------------------------------
...............................................................................................................ATTTTATAAATATTATGTTTACAAA..................................................................................................................2516.006.006.00-----------------------------------------------------------------------------------------------
..........................................GTCGTACGGTGCGGATGGTG............................................................................................................................................................................................2015.005.00--2.00------2.00------------------------------1.00-------------------------------------------------------
..........................................GTCGTACGGTGCGGATGG..............................................................................................................................................................................................1815.005.00----1.00----1.00------------1.00----------------------------------1.00-----------------------------1.00--------
........................................CTGTCGTACGGTGCGGATGG..............................................................................................................................................................................................2014.004.00------2.00------------------------------------------------------1.00-----------1.00----------------------
.............................................GTACGGTGCGGATGGTGG...........................................................................................................................................................................................1814.004.00--2.00---1.00-----------1.00-----------------------------------------------------------------------------
..........................AGCTGAGGGACGGCCTGTCGTA..........................................................................................................................................................................................................2214.004.00----3.00----------------1.00--------------------------------------------------------------------------
...................................ACGGCCTGTCGTACGGTGCG...................................................................................................................................................................................................2014.004.00-------------------2.00--------------------------------------------1.00-------------1.00-----------------
..................................GACGGCCTGTCGTACGGTG.....................................................................................................................................................................................................1914.004.00----1.00----------2.00----1.00---------------------------------------------------------------------------
....................................CGGCCTGTCGTACGGTGCG...................................................................................................................................................................................................1913.003.00--------------------1.00---------1.00------------------------------------1.00----------------------------
...................................ACGGCCTGTCGTACGGTGC....................................................................................................................................................................................................1913.003.00-----1.00---------------------1.00---------1.00----------------------------------------------------------
...............................................................................................................................................................................................................CATTCATCTGGGCTGTTTGACAGAC..................2513.003.00-----3.00------------------------------------------------------------------------------------------
...................................ACGGCCTGTCGTACGGT......................................................................................................................................................................................................1713.003.00---1.00--------------------1.001.00----------------------------------------------------------------------
.........................CAGCTGAGGGACGGCCTG...............................................................................................................................................................................................................1812.002.00----------------------1.00-------------------1.00-----------------------------------------------------
.......................................................................................................................................................................................................TGGAAAGACATTCATCTGGGCTGTTT.........................2612.002.00------------2.00-----------------------------------------------------------------------------------
.........................................................................................................................................................................................................GAAAGACATTCATCTGGGCTGTTTGA.......................2612.002.00--2.00---------------------------------------------------------------------------------------------
....................................................GCGGATGGTGGTGGCCTGCGAGGCTCATT.........................................................................................................................................................................2912.002.00-------------2.00----------------------------------------------------------------------------------
.....................................................................................................................................................GAAATTGATAAGACGTGTCCCTGT.............................................................................2412.002.00--------------2.00---------------------------------------------------------------------------------
..........................................................................................................................................................TGATAAGACGTGTCCCTGTCCCTGGAAACG..................................................................3012.002.00---2.00--------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................GCTGTTTGACAGACTCCC..............1812.002.00---2.00--------------------------------------------------------------------------------------------
..................................................GTGCGGATGGTGGTGGCCTG....................................................................................................................................................................................2012.002.00--2.00---------------------------------------------------------------------------------------------
.............................................................................................CAAGGCTTTCCCGCTTTGA..........................................................................................................................................1912.002.00-------------------------------2.00----------------------------------------------------------------
......................................GCCTGTCGTACGGTGCGGATGGTGGTGGCC......................................................................................................................................................................................3012.002.00---2.00--------------------------------------------------------------------------------------------
......................................GCCTGTCGTACGGTGCGGAT................................................................................................................................................................................................2012.002.00----------------------------1.00------1.00------------------------------------------------------------
....................................................GCGGATGGTGGTGGCCT.....................................................................................................................................................................................1712.002.00------------------------1.001.00----------------------------------------------------------------------
....................................................GCGGATGGTGGTGGCCTGC...................................................................................................................................................................................1912.002.00------1.00----1.00------------------------------------------------------------------------------------
.............................................GTACGGTGCGGATGGTGGTG.........................................................................................................................................................................................2012.002.00-----------------------2.00------------------------------------------------------------------------
....................................................GCGGATGGTGGTGGCCTGCGAG................................................................................................................................................................................2212.002.00-----------------2.00------------------------------------------------------------------------------
..............................................................................................................................................................................................CCGCGTGTTTGGAAAGACATTCATT...................................252.000.00--------------------------------------------------------1.00---1.00-----------------------------------
......................CCGCAGCTGAGGGACGGC..................................................................................................................................................................................................................1812.002.00-1.00--1.00-------------------------------------------------------------------------------------------
.................................................GGTGCGGATGGTGGTGGC.......................................................................................................................................................................................1821.501.50-------0.50---------------0.50-------------------------------------------------------------------0.50----
...........................................................................................................................................................................................................................CTGTTTGACAGACTCCCCAGTTGGTGCCA..2911.001.00--------------------------------------1.00---------------------------------------------------------
......................CCGCAGCTGAGGGACGGCTTG...............................................................................................................................................................................................................2111.002.00------------------------------------------------------------------------------------------1.00-----
...........................................................................CTCATTTCTAGCAAGGAACAAGG........................................................................................................................................................2311.001.00---------------------------------------------------------------1.00--------------------------------
..................................................GTGCGGATGGTGGTGGCCT.....................................................................................................................................................................................1911.001.00--------1.00---------------------------------------------------------------------------------------
...................................ACGGCCTGTCGTACGGTGCGGATGGTGG...........................................................................................................................................................................................2811.001.00-----------1.00------------------------------------------------------------------------------------
...............................AGGGACGGCCTGTCGTACG........................................................................................................................................................................................................1911.001.00--------------------------1.00---------------------------------------------------------------------
................................................................................................................................................................................................................................TGACAGACTCCCCAGTTGGTGCCACGC271.000.00-----------------------------1.00------------------------------------------------------------------
....................................................................................AGCAAGGAACAAGGCGCC....................................................................................................................................................181.000.00----------------------------------------------------------------------------------------1.00-------
.......................CGCAGCTGAGGGACGGCCTG...............................................................................................................................................................................................................2011.001.00---------------------------1.00--------------------------------------------------------------------
.............................................GTACGGTGCGGATGGTGGTGGCT......................................................................................................................................................................................2311.001.00------1.00-----------------------------------------------------------------------------------------
....................................................GCGGATGGTGGTGGCCTT....................................................................................................................................................................................1811.002.00-1.00----------------------------------------------------------------------------------------------
.....................................................CGGATGGTGGTGGCCTGCGAGGCTC............................................................................................................................................................................2511.001.00----------------1.00-------------------------------------------------------------------------------
.........................................TGTCGTACGGTGCGGATGGT.............................................................................................................................................................................................2011.001.00---------------------------------------------------------------------1.00--------------------------
...........................................TCGTACGGTGCGGATGGTGG...........................................................................................................................................................................................2011.001.00--1.00---------------------------------------------------------------------------------------------
..........................................GTCGTACGGTGCGGATGGTGGTGGCCTGC...................................................................................................................................................................................2911.001.00---------------------------------------------------1.00--------------------------------------------
................................................................................................................................TTTACAAAGCTGTAATATATAGAA..................................................................................................2411.001.00-----1.00------------------------------------------------------------------------------------------
................................................................................................................TTTTATAAATATTATGTTTACAA...................................................................................................................2311.001.001.00-----------------------------------------------------------------------------------------------
...............................................................................................................................................TATATAGAAATTGATAAGACGTGTCCC................................................................................2711.001.00------------1.00-----------------------------------------------------------------------------------
............................................................................................................................................................................................................AGACATTCATCTGGGCTGTTTGA.......................2311.001.00---------------------------------1.00--------------------------------------------------------------
.................................................................................................................TTTATAAATATTATGTTTACAAAG.................................................................................................................2411.001.00----------------------------------------------------------------------1.00-------------------------
..................................GACGGCCTGTCGTACGGTGCG...................................................................................................................................................................................................2111.001.00-----------------------------------------------------------------------1.00------------------------
......................................GCCTGTCGTACGGTGCGGATGGT.............................................................................................................................................................................................2311.001.00--------------------------------------------1.00---------------------------------------------------
.........................................................................................................................................................................CTGTCCCTGGAAACGCAGG..............................................................1911.001.00-----1.00------------------------------------------------------------------------------------------
..............................GAGGGACGGCCTGTCGTA..........................................................................................................................................................................................................1811.001.00----1.00-------------------------------------------------------------------------------------------
..................................GACGGCCTGTCGTACGGTGC....................................................................................................................................................................................................2011.001.00-------------1.00----------------------------------------------------------------------------------
.............................TGAGGGACGGCCTGTCGTA..........................................................................................................................................................................................................1911.001.00----------------------------------------------------------------------------------1.00-------------
...............................AGGGACGGCCTGTCGTACGG.......................................................................................................................................................................................................2011.001.00----------------------------------------------------1.00-------------------------------------------
...............................................................TGGCCTGCGAGGCTCATTTCTAGCAAGGAACA...........................................................................................................................................................3211.001.00-----------------------------------------------------------------------------------1.00------------
..........................................................................................................................................TGTAATATATAGAAATTGATAAGACGTGTC..................................................................................3011.001.00------------------------------------------------------1.00-----------------------------------------
.....................................................CGGATGGTGGTGGCCTGC...................................................................................................................................................................................1811.001.00-------------------1.00----------------------------------------------------------------------------
......................................GCCTGTCGTACGGTGCGGATGGA.............................................................................................................................................................................................2311.001.00--------------------------------------------------------------------------------1.00---------------
......................................GCCTGTCGTACGGTGCGGATGG..............................................................................................................................................................................................2211.001.00----------------1.00-------------------------------------------------------------------------------
.................................................GGTGCGGATGGTGGTGGCCTG....................................................................................................................................................................................2111.001.00--1.00---------------------------------------------------------------------------------------------
...................................................TGCGGATGGTGGTGGCCTG....................................................................................................................................................................................1911.001.00-1.00----------------------------------------------------------------------------------------------
.................................................................................TCTAGCAAGGAACAAGGC.......................................................................................................................................................1811.001.00-----------------1.00------------------------------------------------------------------------------
..........................................GTCGTACGGTGCGGATGGTGG...........................................................................................................................................................................................2111.001.00--------------------------------1.00---------------------------------------------------------------
.....................GCCGCAGCTGAGGGACGGCCTGTCGTACG........................................................................................................................................................................................................2911.001.00---------------------------------------1.00--------------------------------------------------------
...........................................TCGTACGGTGCGGATGGTGGTGGCC......................................................................................................................................................................................2511.001.00-------------------------------------------------------------------------------------1.00----------
..............................................................................................................................TGTTTACAAAGCTGTAATA.........................................................................................................1911.001.00-------------------------------------------------------------------------------1.00----------------
.....................................GGCCTGTCGTACGGTGCGGA.................................................................................................................................................................................................2011.001.00---------------------------------------------------------------------------1.00--------------------
............................................CGTACGGTGCGGATGGTGGTGG........................................................................................................................................................................................2211.001.00---------------------------------1.00--------------------------------------------------------------
...........................................TCGTACGGTGCGGATGGTGGTG.........................................................................................................................................................................................2211.001.00----------------------------------------------1.00-------------------------------------------------
..................................................GTGCGGATGGTGGTGGCCTGC...................................................................................................................................................................................2111.001.00-----------1.00------------------------------------------------------------------------------------
.....................................................CGGATGGTGGTGGCCTGCG..................................................................................................................................................................................1911.001.00--1.00---------------------------------------------------------------------------------------------
.....................................................CGGATGGTGGTGGCCTG....................................................................................................................................................................................1711.001.00---1.00--------------------------------------------------------------------------------------------
....................................CGGCCTGTCGTACGGTGC....................................................................................................................................................................................................1811.001.00--------1.00---------------------------------------------------------------------------------------
.........................CAGCTGAGGGACGGCCTGTCGT...........................................................................................................................................................................................................2211.001.00------------------------------1.00-----------------------------------------------------------------
....................................CGGCCTGTCGTACGGTGCGGATGGT.............................................................................................................................................................................................2511.001.00--1.00---------------------------------------------------------------------------------------------
.................................................GGTGCGGATGGTGGTGGCCTGCGAGGCTCAT..........................................................................................................................................................................3111.001.00------------------------------------------------------------------------------------1.00-----------
.................................GGACGGCCTGTCGTACGGT......................................................................................................................................................................................................1911.001.00----------------1.00-------------------------------------------------------------------------------
.........................................................................................................................................................TTGATAAGACGTGTCCAT...............................................................................181.000.00-----------------------------------------------1.00------------------------------------------------
..............................................................................................................................................................................CCTGGAAACGCAGGCACCGCGTGTTTGGA...............................................2911.001.00--------------1.00---------------------------------------------------------------------------------
...................................................................................TAGCAAGGAACAAGGCTTT....................................................................................................................................................1911.001.00-----------------------------------------------------1.00------------------------------------------
..........................................................................................................................................................................................................AAAGACATTCATCTGGGCTGTTTG........................2411.001.00----------1.00-------------------------------------------------------------------------------------
...................................ACGGCCTGTCGTACGGTGCC...................................................................................................................................................................................................2011.003.00--------------------------1.00---------------------------------------------------------------------
..............................GAGGGACGGCCTGTCGTACGG.......................................................................................................................................................................................................2111.001.00----1.00-------------------------------------------------------------------------------------------
..........................................GTCGTACGGTGCGGATGGAG............................................................................................................................................................................................2011.005.00---------1.00--------------------------------------------------------------------------------------
.....................................GGCCTGTCGTACGGTGCG...................................................................................................................................................................................................1811.001.00--------------------1.00---------------------------------------------------------------------------
.......................................CCTGTCGTACGGTGCGGATGG..............................................................................................................................................................................................2111.001.00-------------------------------------------------------1.00----------------------------------------
............................................CGTACGGTGCGGATGGTGGTGGC.......................................................................................................................................................................................2311.001.00--------------------------------------------------1.00---------------------------------------------
................................................................................................................................................................................................................ATTCATCTGGGCTGTCAG........................181.000.00-------------------------------------------------1.00----------------------------------------------
..................................GACGGCCTGTCGTACGGTGCGGATG...............................................................................................................................................................................................2511.001.00---------------------1.00--------------------------------------------------------------------------
....................................CGGCCTGTCGTACGGT......................................................................................................................................................................................................1611.001.00---1.00--------------------------------------------------------------------------------------------
.................................................GGTGCGGATGGTGGTGGCCT.....................................................................................................................................................................................2011.001.00-----------------------------------1.00------------------------------------------------------------
..................................................................................................................................................ATAGAAATTGATAAGACGTGT...................................................................................2111.001.00-------------------------------------------1.00----------------------------------------------------
..............................................................GTGGCCTGCGAGGCTCATTTCT......................................................................................................................................................................2211.001.00----------------------------------1.00-------------------------------------------------------------
..........................................GTCGTACGGTGCGGATGGTGGTGGCCTG....................................................................................................................................................................................2811.001.00--1.00---------------------------------------------------------------------------------------------
...........................GCTGAGGGACGGCCTGTCGTAC.........................................................................................................................................................................................................2211.001.00---------------1.00--------------------------------------------------------------------------------
....................................CGGCCTGTCGTACGGCGC....................................................................................................................................................................................................181.000.00---------------------------------------------------------------------------------1.00--------------
..................................GACGGCCTGTCGTACGGTGA....................................................................................................................................................................................................2011.004.00----------------------------------------------------------------------------1.00-------------------
......................................GCCTGTCGTACGGTGCGGATG...............................................................................................................................................................................................2111.001.00---------1.00--------------------------------------------------------------------------------------
.......................................................................................................................................................................................................TGGAAAGACATTCATCTGGGCTATTT.........................261.000.00------------1.00-----------------------------------------------------------------------------------
..................................GACGGCCTGTCGTACGGT......................................................................................................................................................................................................1811.001.00------1.00-----------------------------------------------------------------------------------------
.....................................................CGGATGGTGGTGGCCTGCGAGGCTCATT.........................................................................................................................................................................2811.001.00------------------------------------1.00-----------------------------------------------------------
.....................GCCGCAGCTGAGGGACGGCCTG...............................................................................................................................................................................................................2211.001.00--------------------------------1.00---------------------------------------------------------------
....................................................GCGGATGGTGGTGGCCTGCGAGGCTCATTTCTAG....................................................................................................................................................................3411.001.00--------------------------------------------------------------------------1.00---------------------
.............................................GTACGGTGCGGATGGTGGTGGC.......................................................................................................................................................................................2211.001.00------------------1.00-----------------------------------------------------------------------------
...........................GCTGAGGGACGGCCTGTCGTACGGGGC....................................................................................................................................................................................................271.000.00--------------------------------------------------------------------------------------1.00---------
........................................................................................................................................................ATTGATAAGACGTGTCCCTGTC............................................................................2211.001.00------------------------------------------------------------------------1.00-----------------------
...................................................................................TAGCAAGGAACAAGGCTT.....................................................................................................................................................1811.001.00---------------------1.00--------------------------------------------------------------------------
......................................GCCTGTCGTACGGTGCGGATGGTTT...........................................................................................................................................................................................2511.001.00---------------------------------------------1.00--------------------------------------------------
...............................................ACGGTGCGGATGGTGGTTGC.......................................................................................................................................................................................201.000.00--1.00---------------------------------------------------------------------------------------------
...........................GCTGAGGGACGGCCTGTCGTA..........................................................................................................................................................................................................2111.001.00--------1.00---------------------------------------------------------------------------------------
................................GGGACGGCCTGTCGTACGGTGC....................................................................................................................................................................................................2211.001.00-----------------------------------------------------------------------------1.00------------------
.......................CGCAGCTGAGGGACGGCCTGTCG............................................................................................................................................................................................................2311.001.00-----------------------------------------------------------------1.00------------------------------
........................GCAGCTGAGGGACGGCCTGTC.............................................................................................................................................................................................................2111.001.00------------------1.00-----------------------------------------------------------------------------
...................................ACGGCCTGTCGTACGGTGAA...................................................................................................................................................................................................2011.0012.00--------1.00---------------------------------------------------------------------------------------
.....................GCCGCAGCTGAGGGACG....................................................................................................................................................................................................................1711.001.00--------------------------------------------------------------------1.00---------------------------
...............................................ACGGTGCGGATGGTGGTGGCCTGCGAGGCTC............................................................................................................................................................................3111.001.00-----------------------------1.00------------------------------------------------------------------
...........................GCTGAGGGACGGCCTGTCGTACG........................................................................................................................................................................................................2311.001.00----------------------------1.00-------------------------------------------------------------------
............................CTGAGGGACGGCCTGT..............................................................................................................................................................................................................1611.001.00-----------------------------------------1.00------------------------------------------------------
...............................AGGGACGGCCTGTCG............................................................................................................................................................................................................1520.500.50--------------------------------------------------------------------------------------------0.50---
...........................................................................CTCATTTCTAGCAAGGA..............................................................................................................................................................1720.500.50---0.50--------------------------------------------------------------------------------------------
................................................................................................................................................ATATAGAAATTGATAAGA........................................................................................1840.250.25---------------------------------------------------------------------------------------------0.25--
...................................................................................TAGCAAGGAACAAGGC.......................................................................................................................................................1650.200.20----------------------------------------------------------------------------------------------0.20-
...............................................................................................................................................................................................................CATTCATCTGGGCTGT...........................1660.170.17-----------------------------------------------------------------------------------------------0.17

Antisense strand
ACATCCTGCCTGAGGCAGGAAGCCGCAGCTGAGGGACGGCCTGTCGTACGGTGCGGATGGTGGTGGCCTGCGAGGCTCATTTCTAGCAAGGAACAAGGCTTTCCCGCTTTGATTTTATAAATATTATGTTTACAAAGCTGTAATATATAGAAATTGATAAGACGTGTCCCTGTCCCTGGAAACGCAGGCACCGCGTGTTTGGAAAGACATTCATCTGGGCTGTTTGACAGACTCCCCAGTTGGTGCCATG
...................................................(((...(((..((((((.....))).)))..)))))).....((((((......))))))...........................................................................................................................................
..................................................51....................................................................................137...............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR189784DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		GSM339994(GSM339994)
hues6. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		GSM416733(GSM416733)
HEK293. (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR189785SRR037931(GSM510469)
293GFP. (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR191570(GSM715680)
56genomic small RNA (size selected RNA from t. (breast)		SRR038854(GSM458537)
MM653. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR191417(GSM715527)
39genomic small RNA (size selected RNA from t. (breast)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR343335TAX577579(Rovira)
total RNA. (breast)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR038862(GSM458545)
MM472. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR343337SRR040015(GSM532900)
G623T. (cervix)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR191585(GSM715695)
196genomic small RNA (size selected RNA from . (breast)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191413(GSM715523)
28genomic small RNA (size selected RNA from t. (breast)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..................................................................................................................................................................................................................................CACCAACTGGGGAGTCTGT..... 1912.002.00------2.00-----------------------------------------------------------------------------------------
.......CGGCTTCCTGCCTCAGGC................................................................................................................................................................................................................................. 1811.001.00--------------------------------------------------------------1.00---------------------------------
.TTCCTGCCTCAGGCAGGATG..................................................................................................................................................................................................................................... 2011.001.00-----------1.00------------------------------------------------------------------------------------
..............GCAGGAAGCCGCAGCGAAT......................................................................................................................................................................................................................... 191.000.00-----------------------------------------------------------1.00------------------------------------
..................GTCCCTCAGCTGCGGCTTC..................................................................................................................................................................................................................... 1911.001.00----------------------------------1.00-------------------------------------------------------------
......................................CACCGTACGACAGGC..................................................................................................................................................................................................... 1511.001.00---1.00--------------------------------------------------------------------------------------------