ID: uc003eqe.1_intron_5_0_chr3_134084752_r
GENE: AMOTL2(1)
chr3:134084702-134085174-


(1)
AGO2.ip 		(3)
B-CELL 		(1)
BRAIN 		(10)
BREAST 		(30)
CELL-LINE 		(3)
CERVIX 		(3)
FIBROBLAST 		(3)
HEART 		(8)
HELA 		(1)
KIDNEY 		(7)
LIVER 		(1)
OTHER 		(2)
RRP40.ip 		(29)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
GATGGACAGTGAAATGAGGAGGCTGCAAGACTTCAACCGGGATCTTAGAGGTGAGAGCCAGTCACACAGGTGGAGGTTGGAGAACCTCTGCAGAGGACTTACTTCTTTTGTTCTAGAGAAAAATTGGGAATCTCTATTCTCTGTCAAAAGTGCAGATGAACTCAGAGAGCCAGGCTGAGACCCCTTTGGAGCTGCCCTGATAGAGAGATGCTTGTCTCTATGTACTGGGCCTAGGATCCCCTCAGGGATGATGGCTCTTGACAGAGGAGGCTCCCACCCATGGGGCCCTGAGCTGAGCTGGGGTTTCCTTATGAACCCATCCCCAATATGGAGGATACAGCCCCATCCTGATAGGACGTCAGGAAAAATCCCAAGCTGGCAGCTTCACCTGACACTAAAACATCTTTCCTTCCCTTGAAACAGAGAGATTGGAATCTGCAAATCGCCGCCTGGCAAGCAAGACACAGGAGGCC
.......................................................................(((((((....)))))))((((((((......))))))))..((((((...........))))))..(((((((...(((........)))..((((((((.((((((....)))...))).((((..(((.((((((....)))))).)))...)))).....(((((....)))))..)))))))))))))))...............................................................................................................................................................................................................
......................................................................71..................................................................................................................................................................................................267............................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormDRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR038854(GSM458537)
MM653. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR029129(GSM416758)
SW480. (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029128(GSM416757)
H520. (cell line)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037938(GSM510476)
293Red. (cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR038861(GSM458544)
MM466. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038863(GSM458546)
MM603. (cell line)		SRR029131(GSM416760)
MCF7. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189784SRR040018(GSM532903)
G701N. (cervix)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		GSM532874(GSM532874)
G699T. (cervix)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR038855(GSM458538)
D10. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR038858(GSM458541)
MEL202. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR191609(GSM715719)
194genomic small RNA (size selected RNA from . (breast)		SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577744(Rovira)
total RNA. (breast)		TAX577738(Rovira)
total RNA. (breast)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR040024(GSM532909)
G613N. (cervix)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
...................................................................................................................................................................................................................................................AGGGATGATGGCTCTTGACA..................................................................................................................................................................................................................20188.0088.0015.0016.00-8.00-6.004.00-5.003.003.00---1.00--4.001.004.00-1.002.00-2.00----2.00-1.00-----1.00----1.001.00-1.00----------------------1.00----1.001.00---------1.00--1.00-----1.00---------
...................................................................................................................................................................................................................................................AGGGATGATGGCTCTTGACAG.................................................................................................................................................................................................................21132.0032.0011.005.00-2.002.001.001.00---3.00----------1.00-1.00-2.00----------1.001.00--------------------------------------------1.00--------------------
...................................................................................................................................................................................................................................................AGGGATGATGGCTCTTGACAGAGGAGGCTCCCACCCATGGGGCCCTGAGC....................................................................................................................................................................................50129.0029.00--23.00---------5.00---------------1.00--------------------------------------------------------------------------
..................................................................................................................................................................................................................................................CAGGGATGATGGCTCTTGACA..................................................................................................................................................................................................................21122.0022.003.0010.00-4.00--------------------------------1.00-1.00----1.00---------------------------------1.001.00------------------------
...................................................................................................................................................................................................................................................AGGGATGATGGCTCTTGACAGAGGAGGCTCCCACCCATGGGGCCCTGAGCTGAGC...............................................................................................................................................................................55112.0012.00--8.00---------1.00---1.00-----------2.00--------------------------------------------------------------------------
..................................................................................................................................................................................................................................................CAGGGATGATGGCTCTTGACAGA................................................................................................................................................................................................................23111.0011.00-------3.00-4.00-------------------1.00------------------------------------------1.00------------1.00------------1.00----
..................................................................................................................................................................................................................................................CAGGGATGATGGCTCTTGACAG.................................................................................................................................................................................................................2219.009.001.00---2.00-------------------1.00----------------1.00----------------1.00-----------1.00--------1.00--------------1.00--------
...................................................................................................................................................................................................................................................AGGGATGATGGCTCTTG.....................................................................................................................................................................................................................1718.008.00-------5.00-----3.00-----------------------------------------------------------------------------------------
.ATGGACAGTGAAATGAGGAGGCATC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................256.000.00-----------6.00-------------------------------------------------------------------------------------------
..........GAAATGAGGAGGCTGCAAGACT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2216.006.00----5.001.00-------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................AGGGATGATGGCTCTTGA....................................................................................................................................................................................................................1814.004.002.00------------1.00----1.00------------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................CCCACCCATGGGGCCCTGAGCTGAGCTG.............................................................................................................................................................................2814.004.00--------------4.00----------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................AGGGATGATGGCTCTTGACAGA................................................................................................................................................................................................................2213.003.001.001.00-------------------1.00---------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................AGGGATGATGGCTCTTGAC...................................................................................................................................................................................................................1913.003.00---2.00--1.00------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................AGGGATGATGGCTCTTGACAGAGGAGGCTCCCACCCATGGGGCCCTGAGCTGAGCTGGGGT.........................................................................................................................................................................6113.003.00----------------3.00--------------------------------------------------------------------------------------
...........................................................................................AGAGGACTTACTTCTTTTGTTCTAGAGAAA................................................................................................................................................................................................................................................................................................................................................................3013.003.00--------------------3.00----------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................AGGGATGATGGCTCTTGACAGAG...............................................................................................................................................................................................................2313.003.001.00-------------------------1.00----------------------------------------------------------------------1.00-----
..................................................................................................................................................................................................................................................CAGGGATGATGGCTCTTGACAGAGGAGGCTCCCACCCATGGGGCCCTGAGC....................................................................................................................................................................................5113.003.00--3.00----------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................CAGGGATGATGGCTCTTGAC...................................................................................................................................................................................................................2012.002.002.00------------------------------------------------------------------------------------------------------
.........................................................................AGGTTGGAGAACCTCTGCAGAGGACTTCTT..................................................................................................................................................................................................................................................................................................................................................................................302.000.00-----------------------2.00-------------------------------------------------------------------------------
.................GGAGGCTGCAAGACTTCAACCGGGATCTTAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................3312.002.00---------------2.00---------------------------------------------------------------------------------------
..TGGACAGTGAAATGAGGAGGCTGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.002.00--------------------------------1.00-1.00--------------------------------------------------------------------
.....ACAGTGAAATGAGGAGGCTGCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002.00----1.00-1.00------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................AGGGATGATGGCTCTTGACAGAGG..............................................................................................................................................................................................................2412.002.00--------1.00---------------------------------------------------------------------------------------1.00------
..................................................................................................................................................................................................................................................CAGGGATGATGGCTCTTGACAGAGGAGGC..........................................................................................................................................................................................................2912.002.00----------------------------------------1.00----------------------------------1.00---------------------------
...............GAGGAGGCTGCAAGACTTCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002.00--------------------------------------------2.00----------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAATCGCCGCCTGG....................1712.002.00------------------------------2.00------------------------------------------------------------------------
..........GAAATGAGGAGGCTGCAAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002.00---------------------------------------2.00---------------------------------------------------------------
.......AGTGAAATGAGGAGGCTGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002.00---------------------------------2.00---------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGATTGGAATCTGCAAATAGAG..........................241.000.00---------------------------------------------------------------------------------------------------1.00---
.....................................................................................................................................................................................................................................................GGATGATGGCTCTTGACA..................................................................................................................................................................................................................1811.001.00-1.00-----------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................AGGGATGATGGCTCTTGACAAA................................................................................................................................................................................................................2211.0088.00-----1.00-------------------------------------------------------------------------------------------------
...........................................................................GTTGGAGAACCTCTGCAGAGGAC.......................................................................................................................................................................................................................................................................................................................................................................................2311.001.00----------------------------------------------------------------1.00--------------------------------------
.........................................................................................................................................................................CCAGGCTGAGACCCCTCCAG............................................................................................................................................................................................................................................................................................201.000.00---------------------------------------------------------------------1.00---------------------------------
.............................................................................................................................................................................................................AGATGCTTGTCTCTATGAT.........................................................................................................................................................................................................................................................191.000.00-------------------------------------------------------------------------------------------1.00-----------
...................................................................................................................................................................................................................................................AGGGATGATGGCTCTTGACAGAGGAG............................................................................................................................................................................................................2611.001.00-----1.00-------------------------------------------------------------------------------------------------
.ATGGACAGTGAAATGAGGAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00-------------------------------------------------------------1.00-----------------------------------------
.....ACAGTGAAATGAGGAGGCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00------1.00------------------------------------------------------------------------------------------------
....GACAGTGAAATGAGGAGGCTGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001.00------1.00------------------------------------------------------------------------------------------------
........GTGAAATGAGGAGGCTGCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00-----------------------------------------------------------------------------------------------------1.00-
.........................................................................................................................................................AGATGAACTCAGAGAGCCAGGCT.........................................................................................................................................................................................................................................................................................................2311.001.00---------------------------1.00---------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................TAAAACATCTTTCCTTCCCTTGA.......................................................2311.001.00--------------------------------1.00----------------------------------------------------------------------
.......................TGCAAGACTTCAACCGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.001.00------------------------------------------------------------1.00------------------------------------------
..............TGAGGAGGCTGCAAGACTTCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00---------------------------1.00---------------------------------------------------------------------------
..................................................................................................................................................................................................................................................CAGGGATGATGGCTCTTGACAGAG...............................................................................................................................................................................................................2411.001.00-----------------------------------------------1.00-------------------------------------------------------
.............................................................................TGGAGAACCTCTGCAGAG..........................................................................................................................................................................................................................................................................................................................................................................................1821.001.00-----------------------------------------------------------------------------------1.00-------------------
..TGGACAGTGAAATGAGGAGGCTGCAAGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001.00-----------------------------------------------------------1.00-------------------------------------------
..................................................................................................................................................................................................................................................CAGGGATGATGGCTCTTGACAGAGGAGGA..........................................................................................................................................................................................................291.000.00------------------------------------------------1.00------------------------------------------------------
....................................................................................................................................................................................................................................................GGGATGATGGCTCTTGACAGAGGAGGA..........................................................................................................................................................................................................271.000.00-1.00-----------------------------------------------------------------------------------------------------
.ATGGACAGTGAAATGAGGAGGCTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................251.000.00--------------------------------------------------------------1.00----------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGATTGGAATCTGCAAC...............................201.000.00-----------------------------------------1.00-------------------------------------------------------------
...............................................................................................................................................................................................................................................CCTCAGGGATGATGGCTCTTGACAGAGGAGGCT.........................................................................................................................................................................................................3311.001.00---------------1.00---------------------------------------------------------------------------------------
..........GAAATGAGGAGGCTGCAAGAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.002.00---------------------1.00---------------------------------------------------------------------------------
.ATGGACAGTGAAATGAGGAGGCTGCAAGACT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................3111.001.00-----------------------------------------------------------------------------------------1.00-------------
..................................................................................................................................................................................................................................................CAGGGATGATGGCTCTTGACAGAGGAG............................................................................................................................................................................................................2711.001.00--------------------------1.00----------------------------------------------------------------------------
......................................................................................TCTGCAGAGGACTTACTTCTTT.............................................................................................................................................................................................................................................................................................................................................................................2211.001.00---------------------------------------------1.00---------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................CCCAAGCTGGCAGCTTCACCTG..................................................................................2211.001.00-----------------------------------------------------------------------1.00-------------------------------
........GTGAAATGAGGAGGCTGCAAGACTTCAACCGGG................................................................................................................................................................................................................................................................................................................................................................................................................................................3311.001.001.00------------------------------------------------------------------------------------------------------
..........................................................................GGTTGGAGAACCTCTGCAGAGGACTT.....................................................................................................................................................................................................................................................................................................................................................................................2611.001.00----1.00--------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAGCAAGACACAGCA....181.000.00------------------------------------------------------------------------------------------------------1.00
...............................................................................................................................................................................................CTGCCCTGATAGAGAGATG.......................................................................................................................................................................................................................................................................1911.001.00-------------------------------1.00-----------------------------------------------------------------------
...................AGGCTGCAAGACTTCAACCGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00----------------------------------1.00--------------------------------------------------------------------
...................................................................................................................................................................................................................................................AGGGATGATGGCTCTTGAAA..................................................................................................................................................................................................................2011.004.00----------------------------------------------------------------------------------------------------1.00--
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGCCGCCTGGCAAGCAAGACACAGGAGG..3111.001.00---------------1.00---------------------------------------------------------------------------------------
...........................................................................GTTGGAGAACCTCTGCAGAGGACTTAC...................................................................................................................................................................................................................................................................................................................................................................................2711.001.00------------------------------------------------------------------------------------------1.00------------
...................................................................................................................................................................................................................................................AGGGATGATGGCTCTTGACAGAGGAGGCTCCCACCCATGGGGCCCTGAGCTGAG................................................................................................................................................................................5411.001.00---------------------------------------------------------------------------------1.00---------------------
...................................................................................................................................................................................................................................................AGGGATGATGGCTCTTGACAGAGGAGG...........................................................................................................................................................................................................2711.001.00--------1.00----------------------------------------------------------------------------------------------
.ATGGACAGTGAAATGAGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00------------------------------------------------------1.00------------------------------------------------
...................................................................................................................................................................................................................................................AGGGATGATGGCTCTTGACAGAGGAA............................................................................................................................................................................................................2611.001.00--------------------------------------1.00----------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................TGGGGTTTCCTTATGAACTCTG.........................................................................................................................................................221.000.00---------------------------------------------------1.00---------------------------------------------------
..................................................................................................................................................................................................................................................CAGGGATGATGGCTCTTGACAGAGGA.............................................................................................................................................................................................................2611.001.00--------1.00----------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................CAGGGATGATGGCTCTTGACAGAGG..............................................................................................................................................................................................................2511.001.00--------------------------------------------------------------------------------------1.00----------------
....................................................................................................................................................................................................................................................GGGATGATGGCTCTTGACAGAGGAGGC..........................................................................................................................................................................................................2711.001.00-1.00-----------------------------------------------------------------------------------------------------
..TGGACAGTGAAATGAGGAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00--------------------------------------------------------1.00----------------------------------------------
..................................................................................................................................................................................................................................................CAGGGATGATGGCTCTTGACAGAGGAAAA..........................................................................................................................................................................................................2911.001.00----------1.00--------------------------------------------------------------------------------------------
.........TGAAATGAGGAGGCTGCAAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00------------------1.00------------------------------------------------------------------------------------
....................................................................................................................................................................GAGAGCCAGGCTGAGACCCCTTTGGAGCTGC......................................................................................................................................................................................................................................................................................3111.001.00-----------------------------------1.00-------------------------------------------------------------------
.........................................................................................................................................................................................TTGGAGCTGCCCTGATAGAGAGATGCT.....................................................................................................................................................................................................................................................................2711.001.00---------1.00---------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................CATCCTGATAGGACGTCAG...............................................................................................................1911.001.00-------------------------------------------------------1.00-----------------------------------------------
.........................................................................AGGTTGGAGAACCTCTGCAGAGGAC.......................................................................................................................................................................................................................................................................................................................................................................................2511.001.00---------------------------1.00---------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................AAGCTGGCAGCTTCACCTGACACT.............................................................................2411.001.00-----------------------------------------------------------------------------------------------1.00-------
..................................................................................................................................................................................................................................................CAGGGATGATGGCTCTT......................................................................................................................................................................................................................1711.001.00--------------------------1.00----------------------------------------------------------------------------
...................................................................................................................................................................................................................................................AGGGATGATGGCTCTTGACAGGAA..............................................................................................................................................................................................................2411.0032.00----------------------1.00--------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAGATTGGAATCTGCAG................................201.000.00----------------------------------------1.00--------------------------------------------------------------
...............GAGGAGGCTGCAAGACTTCAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001.00-----------------------------------------------------------------1.00-------------------------------------
...................................................................................................................................................................................................................................................AGGGATGATGGCTCTTGACAGAA...............................................................................................................................................................................................................2311.003.00------------------------------------------1.00------------------------------------------------------------
...........................................................................GTTGGAGAACCTCTGCAGAGGACTTACTTC................................................................................................................................................................................................................................................................................................................................................................................3011.001.00---------------------------------------------------------------1.00---------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................GATAGGACGTCAGGAAAAATCCCAAGCTGGC.............................................................................................3111.001.00--------------------1.00----------------------------------------------------------------------------------
...........AAATGAGGAGGCTGCAAGAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00----------------------------------------------------1.00--------------------------------------------------
...................................................................................................................................................................................................................................................AGGGATGATGGCTCTTTACA..................................................................................................................................................................................................................201.000.00------------------------------------------------------------------1.00------------------------------------
....................................................................................................................................................................................................CTGATAGAGAGATGCTT....................................................................................................................................................................................................................................................................1711.001.00-----------------------------------1.00-------------------------------------------------------------------
...................................................................................................................................................................................................................................................AGGGATGATGGCTCTTGACAGAGGA.............................................................................................................................................................................................................2511.001.00-------------------------------------------------------------------1.00-----------------------------------
...................................................................................................................................................................................................................................................AGGGATGATGGCTCTTGACAGAGGAGGCT.........................................................................................................................................................................................................2911.001.00-1.00-----------------------------------------------------------------------------------------------------
............................................................................................................................................................................................GAGCTGCCCTGATAGAGAGATG.......................................................................................................................................................................................................................................................................2211.001.00-------------------------1.00-----------------------------------------------------------------------------
..........GAAATGAGGAGGCTGCAAGACTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001.00----1.00--------------------------------------------------------------------------------------------------
............................................................................................................................................................TGAACTCAGAGAGCCAGGCTG........................................................................................................................................................................................................................................................................................................2111.001.00--------------------------------------------------------------------------------------------1.00----------
........................................................................................................................................................CAGATGAACTCAGAGAGC...............................................................................................................................................................................................................................................................................................................1821.001.00-------------------------------------------------1.00-----------------------------------------------------
..............................................................................................................................................................................................................................................................CTCTTGACAGAGGAGGCTCCCACCCATGGA.............................................................................................................................................................................................301.000.00----------------------------------------------1.00--------------------------------------------------------
........................................................................................................................AAATTGGGAATCTCTAT................................................................................................................................................................................................................................................................................................................................................1720.500.50----------------------------------------------0.50--------------------------------------------------------

Antisense strand
GATGGACAGTGAAATGAGGAGGCTGCAAGACTTCAACCGGGATCTTAGAGGTGAGAGCCAGTCACACAGGTGGAGGTTGGAGAACCTCTGCAGAGGACTTACTTCTTTTGTTCTAGAGAAAAATTGGGAATCTCTATTCTCTGTCAAAAGTGCAGATGAACTCAGAGAGCCAGGCTGAGACCCCTTTGGAGCTGCCCTGATAGAGAGATGCTTGTCTCTATGTACTGGGCCTAGGATCCCCTCAGGGATGATGGCTCTTGACAGAGGAGGCTCCCACCCATGGGGCCCTGAGCTGAGCTGGGGTTTCCTTATGAACCCATCCCCAATATGGAGGATACAGCCCCATCCTGATAGGACGTCAGGAAAAATCCCAAGCTGGCAGCTTCACCTGACACTAAAACATCTTTCCTTCCCTTGAAACAGAGAGATTGGAATCTGCAAATCGCCGCCTGGCAAGCAAGACACAGGAGGCC
.......................................................................(((((((....)))))))((((((((......))))))))..((((((...........))))))..(((((((...(((........)))..((((((((.((((((....)))...))).((((..(((.((((((....)))))).)))...)))).....(((((....)))))..)))))))))))))))...............................................................................................................................................................................................................
......................................................................71..................................................................................................................................................................................................267............................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormDRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR038854(GSM458537)
MM653. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR029129(GSM416758)
SW480. (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029128(GSM416757)
H520. (cell line)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037938(GSM510476)
293Red. (cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR038861(GSM458544)
MM466. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038863(GSM458546)
MM603. (cell line)		SRR029131(GSM416760)
MCF7. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189784SRR040018(GSM532903)
G701N. (cervix)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		GSM532874(GSM532874)
G699T. (cervix)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR038855(GSM458538)
D10. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR038858(GSM458541)
MEL202. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR191609(GSM715719)
194genomic small RNA (size selected RNA from . (breast)		SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577744(Rovira)
total RNA. (breast)		TAX577738(Rovira)
total RNA. (breast)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR040024(GSM532909)
G613N. (cervix)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
........................................................................................................CTTTTGTTCTAGAGAGGTA.............................................................................................................................................................................................................................................................................................................................................................. 192.000.00--------------------------------------------------1.00-----------------------------1.00----------------------
.........................................................................................................................................................................................................................................................................GGAGGCTCCCACCCATGCAC............................................................................................................................................................................................ 201.000.00----------------------------------------------------------------------------1.00--------------------------
..........................................................................................................................................................................................................................................................................GAGGCTCCCACCCATTGG............................................................................................................................................................................................. 181.000.00-----------------------------------------------------1.00-------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................TACAGCCCCATCCTGGGG........................................................................................................................ 181.000.00------------------1.00------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................CCTGAGCTGAGCTGGGGCG........................................................................................................................................................................ 191.000.00---------------------------------------------------------1.00---------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................GAAAAATCCCAAGCTAC.............................................................................................. 171.000.00----------------------------------------------------------------------------------------1.00--------------
......................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTCCCTTGAAACCAGG................................................ 191.000.00-------------1.00-----------------------------------------------------------------------------------------