ID: uc003eps.2_intron_19_0_chr3_133368788_r.5p
GENE: (8)
chr3:133371107-133371356-


(5)
B-CELL 		(2)
BRAIN 		(2)
BREAST 		(15)
CELL-LINE 		(1)
CERVIX 		(1)
HEART 		(4)
HELA 		(1)
KIDNEY 		(2)
LIVER 		(5)
OTHER 		(1)
RRP40.ip 		(10)
SKIN

Sense strand
TGGATGTCAGTGCATTTCAAGCACCTGAAGATTTATTAGATGGTTGTCGGGTACGTCTTTATTATATAATACATGCAGTAGATGATATACATTAGCATTTCCTAGCCTGACTTTGAAGACCCTTCAGAGTTGGGCTTGCTCCTTACTATCTATGTAAACCCTCCACTCTAGCTAAGTAGATGCACTTACTAGACCATGTCCATCCTTTGGCTGCGAGAGTCCCTCTGCCTGCAAGGTATCTTCCTCTGTT
.......................................................................................................((((..(((((((((...)))))))))..))))......((((.......)))).............................................................................................
......................................................................................................103......................................................................176........................................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR189787SRR189786DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR444068(SRX128916)
Sample 25cDNABarcode: AF-PP-341: ACG CTC TTC . (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR189782SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR029130(GSM416759)
DLD2. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		GSM359173(GSM359173)
hela_10_1. (hela)		SRR040018(GSM532903)
G701N. (cervix)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR189785SRR038858(GSM458541)
MEL202. (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577745(Rovira)
total RNA. (breast)
........................................................................................................................................................TGTAAACCCTCCACTCTCAG..............................................................................20148.001.0046.00-1.00------------------------------1.00--------------
........................................................................................................................................................TGTAAACCCTCCACTCAGCT..............................................................................2016.000.00-10.005.00-------1.00-------------------------------------
........................................................................................................................................................TGTAAACCCTCCACTCTCAGC.............................................................................21114.001.003.005.006.00---------------------------------------------
........................................................................................................................................................TGTAAACCCTCCACTCTCA...............................................................................19111.001.0010.00---------1.00-------------------------------------
........................................................................................................................................................TGTAAACCCTCCACTCAG................................................................................189.000.009.00-----------------------------------------------
.................................TATTAGATGGTTGTCGG........................................................................................................................................................................................................1716.006.00---4.00-------------------------------1.00---1.00--------
........................................................................................................................................................TGTAAACCCTCCACTCTC................................................................................1815.001.004.001.00----------------------------------------------
............................................................................................................................................................................................................CTTTGGCTGCGAGAGG..............................1614.004.00----------------------1.00-1.00-------------1.00--1.00------
............................................................................................................................................................................................................CTTTGGCTGCGAGAG...............................1514.004.00-------2.00--------1.00------------1.00------------------
..............................................................................................................................................................................................................TTGGCTGCGAGAGTCCCGGGT.......................213.000.00-------------2.00---------1.00------------------------
........................................................................................................................................................TGTAAACCCTCCACTCTCTC..............................................................................2013.001.003.00-----------------------------------------------
..................................ATTAGATGGTTGTCGGATA.....................................................................................................................................................................................................1913.001.00----1.00------2.00------------------------------------
.................................TATTAGATGGTTGTCGGA.......................................................................................................................................................................................................1812.006.00------2.00-----------------------------------------
........................................................................................................................................................TGTAAACCCTCCACTCTCACC.............................................................................2112.001.001.00-1.00---------------------------------------------
................................TTATTAGATGGTTGTCGG........................................................................................................................................................................................................1812.002.00------1.00-------------------------1.00---------------
............................................................................................................................................................................................................CTTTGGCTGCGAGAGGTCC...........................1912.004.00------------------------------------1.00---------1.00-
...........................................................................................................TGACTTTGAAGACCCAGAG............................................................................................................................192.000.00-----2.00------------------------------------------
........................................................................................................................................................TGTAAACCCTCCACTCTCGG..............................................................................2012.001.002.00-----------------------------------------------
........................................................................................................................................................TGTAAACCCTCCACTCTCCG..............................................................................2012.001.002.00-----------------------------------------------
........................................................................................................................................................TGTAAACCCTCCACTCTCTG..............................................................................2012.001.002.00-----------------------------------------------
..............................ATTTATTAGATGGTTGTCGGATAT....................................................................................................................................................................................................242.000.00-------------------1.00--------------1.00-------------
............................................................................................................................................................................................................CTTTGGCTGCGAGAGGT.............................1712.004.00---------------------1.00-------------------------1.00
.......................CCTGAAGATTTATTAGATGGT..............................................................................................................................................................................................................2112.002.00--------2.00---------------------------------------
........................................................................................................................................................TGTAAACCCTCCACTCAGGT..............................................................................202.000.00-2.00----------------------------------------------
........................................................................................................................................................TGTAAACCCTCCACTCCCAG..............................................................................202.000.002.00-----------------------------------------------
............................................................................................................................................................................................................CTTTGGCTGCGAGAGTC.............................1711.001.00----------------------------------------1.00-------
............................AGATTTATTAGATGGTTGTCGGAT......................................................................................................................................................................................................241.000.00------------1.00-----------------------------------
........................................................................................................................................................TGTAAACCCTCCACTCTCAT..............................................................................2011.001.001.00-----------------------------------------------
..............................................................................................................................................................................................................TTGGCTGCGAGAGTCCCTCTGCCCGC..................261.000.00-----1.00------------------------------------------
....................................................................................................CCTAGCCTGACTTTGAAGACCCTT..............................................................................................................................2411.001.00----------------------------1.00-------------------
........AGTGCATTTCAAGCACCTGAAGATTTATTAGATGGTTGTCGGATAT....................................................................................................................................................................................................461.000.00------------1.00-----------------------------------
........................................................................................................................................................TGTAAACCCTCCACTCAT................................................................................181.000.001.00-----------------------------------------------
................TCAAGCACCTGAAGATTT........................................................................................................................................................................................................................1811.001.00----1.00-------------------------------------------
........................................................................................................................................................TGTAAACCCTCCACTCTG................................................................................1811.001.001.00-----------------------------------------------
............CATTTCAAGCACCTGAAGATTTA.......................................................................................................................................................................................................................2311.001.00-------------------------------------1.00----------
........................CTGAAGATTTATTAGATGGTTGTCGG........................................................................................................................................................................................................2611.001.00--------------1.00---------------------------------
.......................................................................................................AGCCTGACTTTGAAGACC.................................................................................................................................1811.001.00-------------------------1.00----------------------
........................................................................................................................................................TGTAAACCCTCCACTCAGCC..............................................................................201.000.00-1.00----------------------------------------------
........................................................................................................................................................TGTAAACCCTCCACTCTAAG..............................................................................201.000.001.00-----------------------------------------------
......TCAGTGCATTTCAAGCACCTGAAGAT..........................................................................................................................................................................................................................2611.001.00-----------------1.00------------------------------
........................................................................................................................................................TGTAAACCCTCCACTCTCTT..............................................................................2011.001.00-1.00----------------------------------------------
..................................ATTAGATGGTTGTCGGAG......................................................................................................................................................................................................1811.001.00---------------------------------------------1.00--
........................................TGGTTGTCGGGTACGTCTTA..............................................................................................................................................................................................201.000.00----1.00-------------------------------------------
........................................................................................................................................................TGTAAACCCTCCACTCT.................................................................................1711.001.001.00-----------------------------------------------
............................AGATTTATTAGATGGTTG............................................................................................................................................................................................................1811.001.00---------------------------1.00--------------------
........................................................................................................................................................TGTAAACCCTCCACTCTCTGC.............................................................................2111.001.001.00-----------------------------------------------
...............................................................................................................................................................................................................TGGCTGCGAGAGTCCCGGGT.......................201.000.00--------------------1.00---------------------------
........................................................................................................................................................TGTAAACCCTCCACTCCGGA..............................................................................201.000.00-1.00----------------------------------------------
...............................................................................................................TTTGAAGACCCTTCACTC.........................................................................................................................181.000.00---------------1.00--------------------------------
........................................................................................................................................................TGTAAACCCTCCACTCAGC...............................................................................191.000.001.00-----------------------------------------------
........................................................................................................................................................TGTAAACCCTCCACTCTTAG..............................................................................2011.001.001.00-----------------------------------------------
.......................................................................................................AGCCTGACTTTGAAGACCC................................................................................................................................1911.001.00------------------------------1.00-----------------
...........................AAGATTTATTAGATGGTTGTCG.........................................................................................................................................................................................................2211.001.00------------------------------------------1.00-----
.............................................................................................................................................................................................................TTTGGCTGCGAGAGTTCCC..........................191.000.00------------------1.00-----------------------------
..............................ATTTATTAGATGGTTGTCGGAT......................................................................................................................................................................................................221.000.00--------------1.00---------------------------------
..................................ATTAGATGGTTGTCGG........................................................................................................................................................................................................1611.001.00---------1.00--------------------------------------
........................................................................................................................................................TGTAAACCCTCCACTCTAAGCT............................................................................221.000.00--1.00---------------------------------------------
........................................................................................................................................................TGTAAACCCTCCACTCTCAA..............................................................................2011.001.001.00-----------------------------------------------
...........................AAGATTTATTAGATGGTTGTCGGA.......................................................................................................................................................................................................241.000.00-------------------------------------------1.00----
..............................ATTTATTAGATGGTTGTCGGATA.....................................................................................................................................................................................................231.000.00---------1.00--------------------------------------
...............................TTTATTAGATGGTTGTCGG........................................................................................................................................................................................................1911.001.00--------------------------1.00---------------------
......................................................................................................TAGCCTGACTTTGAAGACC.................................................................................................................................1911.001.00--------------------------------------------1.00---
..............................ATTTATTAGATGGTTG............................................................................................................................................................................................................1630.330.33---------------0.33--------------------------------

Antisense strand
TGGATGTCAGTGCATTTCAAGCACCTGAAGATTTATTAGATGGTTGTCGGGTACGTCTTTATTATATAATACATGCAGTAGATGATATACATTAGCATTTCCTAGCCTGACTTTGAAGACCCTTCAGAGTTGGGCTTGCTCCTTACTATCTATGTAAACCCTCCACTCTAGCTAAGTAGATGCACTTACTAGACCATGTCCATCCTTTGGCTGCGAGAGTCCCTCTGCCTGCAAGGTATCTTCCTCTGTT
.......................................................................................................((((..(((((((((...)))))))))..))))......((((.......)))).............................................................................................
......................................................................................................103......................................................................176........................................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR189787SRR189786DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR444068(SRX128916)
Sample 25cDNABarcode: AF-PP-341: ACG CTC TTC . (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR189782SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR029130(GSM416759)
DLD2. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		GSM359173(GSM359173)
hela_10_1. (hela)		SRR040018(GSM532903)
G701N. (cervix)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR189785SRR038858(GSM458541)
MEL202. (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577745(Rovira)
total RNA. (breast)
...........................................................................................................................................................................................ACTAGACCATGTCCACGA............................................. 181.000.001.00-----------------------------------------------
....................ATCTAATAAATCTTCAGGTGC................................................................................................................................................................................................................. 2111.001.00-------------------------------1.00----------------