| (2) B-CELL | (8) CELL-LINE | (1) CERVIX | (8) HELA | (2) LIVER | (2) SKIN | (1) XRN.ip |
| CTGTCGCTCTTTCTGCCAGCCCTCAACTGAAAGAGGCCCAGTCAGAGAAGGTAGGATTAGTTCTCTTATTAAAAGGAAGTTTTAGATAACATTTCAAACAATAATGACTGATCTGTTTCTTTTATTTTCCATGGACAGGAAGAAGCCCCAAAGCCACTTCACAAAGTAGTGGTATGTGTTAGTAAAAA ..................................................((((((.......)))))).....(((((....(((.((((..(((..((....))..)))..))))))).....))))).......................................................... ..................................................51.....................................................................................138................................................ | Size | Perfect hit | Total Norm | Perfect Norm | DRR001485(DRX001039) "Hela long total cell fraction, LNA(+)". (hela) | DRR001486(DRX001040) "Hela long cytoplasmic cell fraction, LNA(+)". (hela) | SRR037942(GSM510480) 293DroshaTN_cand5. (cell line) | SRR033722(GSM497067) KMS12 cell line (KMS12). (B cell) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | DRR001483(DRX001037) "Hela long cytoplasmic cell fraction, control. (hela) | DRR001482(DRX001036) "Hela long total cell fraction, control". (hela) | SRR039620(GSM531983) HBV(+) Adjacent Tissue Sample 2. (liver) | SRR207116(GSM721078) Nuclear RNA. (cell line) | GSM359173(GSM359173) hela_10_1. (hela) | SRR029124(GSM416753) HeLa. (hela) | DRR000555(DRX000313) "THP-1 whole cell RNA, no treatment". (cell line) | SRR039625(GSM531988) HBV(-) HCV(-) HCC Tissue Sample. (liver) | GSM359174(GSM359174) hela_5_1. (hela) | SRR207111(GSM721073) Whole cell RNA. (cell line) | SRR040028(GSM532913) G026N. (cervix) | SRR029129(GSM416758) SW480. (cell line) | GSM359178(GSM359178) hela_nucl_t. (hela) | SRR060169(GSM565979) 5-8F_cytoplasm. (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR033714(GSM497059) Burkitt Lymphoma (BL134). (B cell) | SRR330911(SRX091749) tissue: normal skindisease state: normal. (skin) | SRR330912(SRX091750) tissue: normal skindisease state: normal. (skin) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..................................................GTAGGATTAGTTCTCTTATTAAAAGGAAGTTTTAGATAACATTTCAAACAATAATGACTGATCTGTTTCTTTTATTTTCCATGGACAG.................................................. | 88 | 1 | 86.00 | 86.00 | 70.00 | 12.00 | - | - | - | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................GTTTTAGATAACATTTCAAACAATAATGAC................................................................................ | 30 | 1 | 15.00 | 15.00 | - | - | 15.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTAGGATTAGTTCTCTTATTAAAAGGAAGTTTTAGATAACATTTCAAACAATAATGACTGATCTGTTTCTTTTATTTTCCATGGACAGT................................................. | 89 | 1 | 4.00 | 86.00 | - | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTAGGATTAGTTCTCTTATTAAAAGGAAGTTTTAGATAACATTTCAAACAATAATGACTGATCTGTTTCTTTTATTTTCCATGGACA................................................... | 87 | 1 | 3.00 | 3.00 | - | 2.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTAGGATTAGTTCTCTTATTA..................................................................................................................... | 21 | 1 | 3.00 | 3.00 | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTAGGATTAGTTCTCTTATTAAAAGGAAGTTTTAGATAACATTTCAAACAATAATGACTGATCTGTTTCTTTTATTTTCCATGGACAGGAA............................................... | 91 | 1 | 3.00 | 3.00 | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTAGGATTAGTTCTCTTATTAAAAGGAAG............................................................................................................. | 29 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................CCCAGTCAGAGAAGGTAGGATTA................................................................................................................................. | 23 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................TCAACTGAAAGAGGCCCAG................................................................................................................................................... | 19 | 1 | 2.00 | 2.00 | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTAGGATTAGTTCTCTTATTAAAAGGAAGTTTTAGATAACATTTCAAACAATAATGACTGATCTGTTTCTTTTATTTTCCATGGACAGGAAGTTT........................................... | 95 | 2.00 | 0.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................GTAGGATTAGTTCTCTTATTAAAAGGAAGT............................................................................................................ | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ....................................CCCAGTCAGAGAAGGTAGGATTAGTT.............................................................................................................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| .....................................................................................................................TCTTTTATTTTCCATTTTA.................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | |
| ...........................................................................................................CTGATCTGTTTCTTTTATTTTCCATGGACAG.................................................. | 31 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ..........TTCTGCCAGCCCTCAACTGAAAGAGG........................................................................................................................................................ | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................AGGAAGAAGCCCCAAAGCC................................. | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................ACAAAGTAGTGGTATGTG.......... | 18 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................CAAAGTAGTGGTATGTGTTAGT..... | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ............................GAAAGAGGCCCAGTCAGAGAA........................................................................................................................................... | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ..................................................GTAGGATTAGTTCTCTTATTAAAAGG................................................................................................................ | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................AACTGAAAGAGGCCCAGTC................................................................................................................................................. | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................ATAATGACTGATCTGTTT...................................................................... | 18 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - | - |
| CTGTCGCTCTTTCTGCCAGCCCTCAACTGAAAGAGGCCCAGTCAGAGAAGGTAGGATTAGTTCTCTTATTAAAAGGAAGTTTTAGATAACATTTCAAACAATAATGACTGATCTGTTTCTTTTATTTTCCATGGACAGGAAGAAGCCCCAAAGCCACTTCACAAAGTAGTGGTATGTGTTAGTAAAAA ..................................................((((((.......)))))).....(((((....(((.((((..(((..((....))..)))..))))))).....))))).......................................................... ..................................................51.....................................................................................138................................................ | Size | Perfect hit | Total Norm | Perfect Norm | DRR001485(DRX001039) "Hela long total cell fraction, LNA(+)". (hela) | DRR001486(DRX001040) "Hela long cytoplasmic cell fraction, LNA(+)". (hela) | SRR037942(GSM510480) 293DroshaTN_cand5. (cell line) | SRR033722(GSM497067) KMS12 cell line (KMS12). (B cell) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | DRR001483(DRX001037) "Hela long cytoplasmic cell fraction, control. (hela) | DRR001482(DRX001036) "Hela long total cell fraction, control". (hela) | SRR039620(GSM531983) HBV(+) Adjacent Tissue Sample 2. (liver) | SRR207116(GSM721078) Nuclear RNA. (cell line) | GSM359173(GSM359173) hela_10_1. (hela) | SRR029124(GSM416753) HeLa. (hela) | DRR000555(DRX000313) "THP-1 whole cell RNA, no treatment". (cell line) | SRR039625(GSM531988) HBV(-) HCV(-) HCC Tissue Sample. (liver) | GSM359174(GSM359174) hela_5_1. (hela) | SRR207111(GSM721073) Whole cell RNA. (cell line) | SRR040028(GSM532913) G026N. (cervix) | SRR029129(GSM416758) SW480. (cell line) | GSM359178(GSM359178) hela_nucl_t. (hela) | SRR060169(GSM565979) 5-8F_cytoplasm. (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR033714(GSM497059) Burkitt Lymphoma (BL134). (B cell) | SRR330911(SRX091749) tissue: normal skindisease state: normal. (skin) | SRR330912(SRX091750) tissue: normal skindisease state: normal. (skin) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ................CAGCCCTCAACTGAACTG.......................................................................................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | |
| ..........TTGAGGGCTGGCAGAA.................................................................................................................................................................. | 16 | 3 | 0.33 | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.33 | - |
| ................................................................................................................................................................ATACCACTACTTTGT............. | 15 | 4 | 0.25 | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.25 |