ID: uc003emz.3_intron_3_0_chr3_129547352_r.3p
GENE: (3)
chr3:129547302-129547551-


(1)
AGO2.ip
(3)
BREAST
(9)
CELL-LINE
(3)
CERVIX
(1)
HEART
(1)
LIVER
(3)
OTHER
(3)
SKIN

Sense strand
TTTCTCTCATTCTAAAAAATAATCATTACCCACTATCTAGAAAACTGTCTTTTAATCTTCTGATTAAAGATTGCTTAATGATAGTGCCTATTTGTTTGGCCAGTAGCATGTTTTTCTTTGTTTTAACACTGGAGTTTCTGCATGGATTTATAATATAAGGTTTTTTTTTTGTTTTTTTGTTTTTTTGTTTTTAACATTAGATAGGCATGAAGCCTTCGTCTCACAGCTGCATGCGTAGTCACTGTTGAAG
..................................................................................................................(((.(((...(((......)))...))).)))........................................................................................................
..................................................................................................................115....................................................................186..............................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM532930(GSM532930)
G702T. (cervix)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
GSM532929(GSM532929)
G702N. (cervix)
SRR189782SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR189784SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
TAX577738(Rovira)
total RNA. (breast)
TAX577745(Rovira)
total RNA. (breast)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
.................................................................................................................................................................TTTTTTTTTGTTTTTTTGTTTTTTTCAAG............................................................2910.000.00--9.00-----1.00--------------
.............................................................................................................................................................AGGTTTTTTTTTTGTTTTTTTCTGG....................................................................254.000.003.001.00---------------------
......................................................................................................................................................................TTTTGTTTTTTTGTTTTTTTCTCC............................................................244.000.004.00----------------------
.................................................................................................................................................................TTTTTTTTTGTTTTTTTGTTTTATC................................................................253.000.001.002.00---------------------
......................................................................................................................................................................TTTTGTTTTTTTGTTTTTTTCTCT............................................................243.000.001.001.001.00--------------------
.............................................................................................................................................................AGGTTTTTTTTTTGTTTTTTGGTC.....................................................................243.000.00-3.00---------------------
.......................................................................................................................................................................TTTGTTTTTTTGTTTTTTTGTTTTTGTC.......................................................283.000.00-3.00---------------------
..................................................................................................................................................................TTTTTTTTGTTTTTTTGTTTCTG.................................................................233.000.00-3.00---------------------
...................................................................................................................................................................TTTTTTTGTTTTTTTGTTTTTTTCCG.............................................................262.000.001.00---1.00------------------
......................................................................................................................................................................TTTTGTTTTTTTGTTTTTTTGTTTTGCT........................................................282.000.002.00----------------------
.............................................................................................................................................................AGGTTTTTTTTTTGTTTTTATTT......................................................................232.000.00-2.00---------------------
.....................................................................................................................................................................TTTTTGTTTTTTTGTTTTTTTGTTTCCC.........................................................282.000.002.00----------------------
...........................................................................................................................................................................TTTTTTTGTTTTTTTGTTTTTCTTC......................................................252.000.00-2.00---------------------
...........................................................................................................................................................................TTTTTTTGTTTTTTTGTTTTTCTCC......................................................252.000.00--2.00--------------------
...........................................................................................................................................................................TTTTTTTGTTTTTTTGTTTTTCCA.......................................................242.000.002.00----------------------
...........................................................................................................................................................................TTTTTTTGTTTTTTTGTTTCGAC........................................................232.000.00-2.00---------------------
...................................................................................................................................................................TTTTTTTGTTTTTTTGTTAAG..................................................................212.000.00--2.00--------------------
.............................................................................................................................................................AGGTTTTTTTTTTGTTTTTTTGG......................................................................232.000.002.00----------------------
.................................................................................................................................................................................................................AAGCCTTCGTCTCACAGCTGCACGCG...............262.000.001.00-----------------1.00----
......................................................................................................................................................................TTTTGTTTTTTTGTTTTTTTGTTTCGG.........................................................272.000.002.00----------------------
...................................................................................................................................................................TTTTTTTGTTTTTTTGTTTTTTTGTTCTG..........................................................292.000.001.00-1.00--------------------
................................................................................................................................................................TTTTTTTTTTGTTTTTTTGTTTTTTTGGTC............................................................302.000.002.00----------------------
.................................................................................................................................................................TTTTTTTTTGTTTTTTTGTTTTTTCGAG.............................................................282.000.002.00----------------------
...................................................................................................................................................................TTTTTTTGTTTTTTTGTTTTTTTCTTC............................................................272.000.002.00----------------------
.........................................................................................................................................................................TGTTTTTTTGTTTTTTTGTTTTTCTTC......................................................272.000.001.001.00---------------------
................................................................................................................................................................TTTTTTTTTTGTTTTTTTGTTTTTTCG...............................................................272.000.00-------2.00---------------
.............................................................................................................................................................AGGTTTTTTTTTTGTTTTTCTGG......................................................................231.000.001.00----------------------
..................................................................................................................................................................TTTTTTTTGTTTTTTTGTTTTTTTCAGC............................................................281.000.001.00----------------------
.......................................................................................................................................................................TTTGTTTTTTTGTTTTTTTGTTTTTACG.......................................................281.000.00--1.00--------------------
..................................................................................................................................................................TTTTTTTTGTTTTTTTGTTATTT.................................................................231.000.00--1.00--------------------
...................................................................................................................................................................TTTTTTTGTTTTTTTGTTTTTTTCCTC............................................................271.000.001.00----------------------
.........................................................................................................................................................................TGTTTTTTTGTTTTTTTGTTTTTCCTC......................................................271.000.001.00----------------------
.................................................................................................................................................................TTTTTTTTTGTTTTTTTGTTTTTCTG...............................................................261.000.00----------------------1.00
......................................................................................................................................................................TTTTGTTTTTTTGTTTTTTTGTTCTG..........................................................261.000.00-1.00---------------------
.............................................................................................................................................................AGGTTTTTTTTTTGTTTTCCCC.......................................................................221.000.001.00----------------------
.....................................................................................................................................................................TTTTTGTTTTTTTGTTTTTTTGTTCTCC.........................................................281.000.001.00----------------------
........................................................................................................................................................................TTGTTTTTTTGTTTTTTTGTTTCGTT........................................................261.000.001.00----------------------
..................................................................................................................................................................TTTTTTTTGTTTTTTTGTTTCTTC................................................................241.000.00-1.00---------------------
......................................................................................................................................................................TTTTGTTTTTTTGTTTTTTTGTTCTGC.........................................................271.000.001.00----------------------
...............................................................................................................................................................GTTTTTTTTTTGTTTTTTTGTTTTCTT................................................................271.000.00-1.00---------------------
..................................................................................................................................................................TTTTTTTTGTTTTTTTGTTTAATG................................................................241.000.00--1.00--------------------
........................................................................................................................................................................TTGTTTTTTTGTTTTTTTGTTTCGC.........................................................251.000.001.00----------------------
...................................................................................................................................................................TTTTTTTGTTTTTTTGTTTTTTTGTCTTG..........................................................291.000.00-1.00---------------------
................................................................................................................................................................TTTTTTTTTTGTTTTTTTGTTTTTTTCTTC............................................................301.000.001.00----------------------
................................................................................................................................................................TTTTTTTTTTGTTTTTTTGTTTTTTTCAGC............................................................301.000.001.00----------------------
................................................................................................................................................................TTTTTTTTTTGTTTTTTTGTTTTCGTC...............................................................271.000.001.00----------------------
.................................................................................................................................................................TTTTTTTTTGTTTTTTTGTTTTTTTGTTCTTT.........................................................321.000.00-1.00---------------------
..................................................................................................................................................................TTTTTTTTGTTTTTTTGTTTTTTCAAG.............................................................271.000.001.00----------------------
.............................................................................................................................................................AGGTTTTTTTTTTGTTTTTTTCCGG....................................................................251.000.00-1.00---------------------
.............................................................................................................................................................AGGTTTTTTTTTTGTTCTTC.........................................................................201.000.001.00----------------------
................................................................................................................................................................TTTTTTTTTTGTTTTTTTGTTTTTTTCAAG............................................................301.000.00--1.00--------------------
.............................................................................................................................................................AGGTTTTTTTTTTGTTTTTTCTTT.....................................................................241.000.001.00----------------------
.................................................................................................................................................................TTTTTTTTTGTTTTTTTGTTTTATCT...............................................................261.000.00-1.00---------------------
..........................................................................................................................................................................GTTTTTTTGTTTTTTTGTTTCTTC........................................................241.000.00-1.00---------------------
.............................................................................................................................................................AGGTTTTTTTTTTGTTTCCC.........................................................................201.000.001.00----------------------
..................................................................................................................................................................TTTTTTTTGTTTTTTTGTTTTCGAG...............................................................251.000.001.00----------------------
............................................................................................TGTTTGGCCAGTAGCATGTTTTTCTTTGTTTC..............................................................................................................................321.000.00-1.00---------------------
................................................................................................................................................................................................AACATTAGATAGGCATTTAG......................................201.000.00----------------1.00------
................................................................................................................................................................TTTTTTTTTTGTTTTTTTGTTTTCGAG...............................................................271.000.00-1.00---------------------
.................................................................................................................................................................TTTTTTTTTGTTTTTTTGTCTG...................................................................221.000.001.00----------------------
....................................................................................................................................................................TTTTTTGTTTTTTTGTTTTTTTGTTTTCGT........................................................301.000.00-1.00---------------------
..................................................................................................................................................................TTTTTTTTGTTTTTTTGTTTTTTTCAAG............................................................281.000.00--1.00--------------------
....................................................................................................................................................................TTTTTTGTTTTTTTGTTTTTTTGTTTTCTTT.......................................................311.000.00-1.00---------------------
....................................................................................................................................................................TTTTTTGTTTTTTTGTTTTTTTCGG.............................................................251.000.001.00----------------------
.......................................................................................................................GTTTTAACACTGGAGATAC................................................................................................................191.000.00------------1.00----------
.......................................................................................................................................................................TTTGTTTTTTTGTTTTTTTGTTTCGT.........................................................261.000.001.00----------------------
................................................................................................................................................................TTTTTTTTTTGTTTTTTTGTTTCACC................................................................261.000.001.00----------------------
....................................................................................................................................................................TTTTTTGTTTTTTTGTTTTTTTGTTCG...........................................................271.000.001.00----------------------
....................................................................................................................................................................TTTTTTGTTTTTTTGTTTTTTTGTTTTCTGG.......................................................311.000.001.00----------------------
........................................................................................................................................................................TTGTTTTTTTGTTTTTTTGTTTAAG.........................................................251.000.00--------1.00--------------
..................................................................................................................................................................TTTTTTTTGTTTTTTTGTTTTTTTGTTTTC..........................................................301.000.00-1.00---------------------
..................................................................................................................................................................TTTTTTTTGTTTTTTTGTTTTTTTGTTCCTG.........................................................311.000.00-1.00---------------------
..............................................................................................................................................................GGTTTTTTTTTTGTTTTCTGG.......................................................................211.000.001.00----------------------
.....................................................................................................................................................................................................................................CATGCGTAGTCACTGTTGA..1911.001.00---------1.00-------------
.............................................................................................................................................................AGGTTTTTTTTTTGTTTTTTCCC......................................................................231.000.001.00----------------------
..................................................................................................................................................................TTTTTTTTGTTTTTTTGTTTTCCTC...............................................................251.000.00-1.00---------------------
..................................................................................................................................................................TTTTTTTTGTTTTTTTGTTTTTTTGTTTCTG.........................................................311.000.00-1.00---------------------
............................................................................................................................................................................................................GCATGAAGCCTTCGTCTCACAGCTGC....................2611.001.00-----------1.00-----------
.............................................................................................................................................................AGGTTTTTTTTTTGTTTTTTTC.......................................................................221.000.001.00----------------------
.................................................................................................................................................................TTTTTTTTTGTTTTTTTGTTTTTTTCTC.............................................................281.000.00-1.00---------------------
.............................................................................................................................................................AGGTTTTTTTTTTGTTTCA..........................................................................191.000.00-1.00---------------------
.....................................................................................................................................................................TTTTTGTTTTTTTGTTTTTTTCGG.............................................................241.000.001.00----------------------
................................................................................................................TTTCTTTGTTTTAACACTGGAGTTTCTGCACGG.........................................................................................................331.000.00--1.00--------------------
.................................................................................................................................................................TTTTTTTTTGTTTTTTTGTTTTTTCG...............................................................261.000.00----1.00------------------
.............................................................................................................................................................................................................CATGAAGCCTTCGTCTCACAGCTGCATG.................2811.001.00-----------------1.00-----
.....................................................................................................................................................................TTTTTGTTTTTTTGTTTTTTTGTTTCCCT........................................................291.000.001.00----------------------
.................................................................................................................................................................TTTTTTTTTGTTTTTTTGTTTTTTCGGC.............................................................281.000.001.00----------------------
....................................................................................................................................................................TTTTTTGTTTTTTTGTTTTTTTCCCG............................................................261.000.001.00----------------------
................................................................................................................................................................TTTTTTTTTTGTTTTTTTGTTTTTTCGAG.............................................................291.000.00-1.00---------------------
...................................................................................................................................................................TTTTTTTGTTTTTTTGTTTTTTTGTTTTCGAG.......................................................321.000.001.00----------------------
...................................................................................................................................................................TTTTTTTGTTTTTTTGTTTTTTTGTCTT...........................................................281.000.001.00----------------------
........................................................................................................................................................................TTGTTTTTTTGTTTTTTTGCCTG...........................................................231.000.001.00----------------------
.................AATAATCATTACCCACTATC.....................................................................................................................................................................................................................2011.001.00--------------------1.00--
.............................................................................................................................................................AGGTTTTTTTTTTGTTTTTTTGGC.....................................................................241.000.001.00----------------------
.............................................................................................................................................................AGGTTTTTTTTTTGTTTTCTGG.......................................................................221.000.001.00----------------------
..................................................................................................................................................................TTTTTTTTGTTTTTTTGTTTTTTCGT..............................................................261.000.001.00----------------------
....................................................................................................................................................................TTTTTTGTTTTTTTGTTTTTTTGTTTTC..........................................................281.000.001.00----------------------
.............................................................................................................................................................AGGTTTTTTTTTTGTTTTTTAAGG.....................................................................241.000.00-1.00---------------------
................................................................................................................................................................TTTTTTTTTTGTTTTTTTGTTTTGGC................................................................261.000.001.00----------------------
.................................................................................................................................................................TTTTTTTTTGTTTTTTTGTTTTTTCTTC.............................................................281.000.001.00----------------------
..................................................................................................................................................................TTTTTTTTGTTTTTTTGTTTTTTCTCC.............................................................271.000.001.00----------------------
................................................................................................................................................................TTTTTTTTTTGTTTTTTTGTTTTCTTC...............................................................271.000.00-1.00---------------------
..................................................................................................................................................................TTTTTTTTGTTTTTTTGTTTTTTTCTGG............................................................281.000.00-1.00---------------------
.........................................................................................................................................................................TGTTTTTTTGTTTTTTTGTTTCTTC........................................................251.000.001.00----------------------
......................................................................................................................................................................TTTTGTTTTTTTGTTTTTTTGTTTATCT........................................................281.000.00-1.00---------------------
................................................................................................................................................................................TTGTTTTTTTGTTTTTAAGTGT....................................................221.000.00--1.00--------------------
.................................................................................................................................................................TTTTTTTTTGTTTTTTTGTTTCGG.................................................................241.000.00-1.00---------------------
...................................................................................................................................................................TTTTTTTGTTTTTTTGTTTTTTTGTTTCTG.........................................................301.000.001.00----------------------
.............................................................................................................................................................AGGTTTTTTTTTTGTTTTTTGCC......................................................................231.000.00-1.00---------------------
.............................................................................................................................................................AGGTTTTTTTTTTGTTGAGA.........................................................................201.000.00-1.00---------------------
.............................................................................................................................................................AGGTTTTTTTTTTGTTTTTTTCTTG....................................................................251.000.00-1.00---------------------
............................................................................................................................................................AAGGTTTTTTTTTTGTTTTTAACT......................................................................241.000.001.00----------------------
..............................................................................................................................................................GGTTTTTTTTTTGTTTTTTTGTTTTATC................................................................281.000.001.00----------------------
............................................................................................................................................................................................................GCATGAAGCCTTCGTCTCACAGC.......................2311.001.00-------------1.00---------
.................................................................................................................................................................TTTTTTTTTGTTTTTTTGTTTAGA.................................................................241.000.00-1.00---------------------
................................................................................................................................................................TTTTTTTTTTGTTTTTTTGTTTTTCTC...............................................................271.000.001.00----------------------
..................................................................................................................................................................TTTTTTTTGTTTTTTTGTTTTTTCGAG.............................................................271.000.001.00----------------------
..............................................................................................TTTGGCCAGTAGCATATG..........................................................................................................................................181.000.00---------------1.00-------
.........................................................................................................................................................................TGTTTTTTTGTTTTTTTGTTTTTCCCC......................................................271.000.00-1.00---------------------
.................................................................................................................................................................TTTTTTTTTGTTTTTTTGTTTTCACC...............................................................261.000.00-1.00---------------------
....................................................................................................CAGTAGCATGTTTTTTGCA...................................................................................................................................191.000.00------1.00----------------
......................................................................................................................................................................TTTTGTTTTTTTGTTTTTTTGTTTTTCTCT......................................................301.000.001.00----------------------
..................................................................................................................................................................TTTTTTTTGTTTTTTTGTTTTTTCG...............................................................251.000.00-1.00---------------------
.............................................................................................................................................................AGGTTTTTTTTTTGTTTTTTTCC......................................................................231.000.00-1.00---------------------
.................................................................................................................................................................TTTTTTTTTGTTTTTTTGTTTTCTC................................................................251.000.00-1.00---------------------
................................................................................................................................................................TTTTTTTTTTGTTTTTTTGTTTTTTTACGG............................................................301.000.001.00----------------------
......................................................................................................................................................................TTTTGTTTTTTTGTTTTTTTCGG.............................................................231.000.001.00----------------------
............................................................................................................................................................AAGGTTTTTTTTTTGTTTTTTTGT......................................................................2440.250.25-0.25---------------------

Antisense strand
TTTCTCTCATTCTAAAAAATAATCATTACCCACTATCTAGAAAACTGTCTTTTAATCTTCTGATTAAAGATTGCTTAATGATAGTGCCTATTTGTTTGGCCAGTAGCATGTTTTTCTTTGTTTTAACACTGGAGTTTCTGCATGGATTTATAATATAAGGTTTTTTTTTTGTTTTTTTGTTTTTTTGTTTTTAACATTAGATAGGCATGAAGCCTTCGTCTCACAGCTGCATGCGTAGTCACTGTTGAAG
..................................................................................................................(((.(((...(((......)))...))).)))........................................................................................................
..................................................................................................................115....................................................................186..............................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM532930(GSM532930)
G702T. (cervix)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
GSM532929(GSM532929)
G702N. (cervix)
SRR189782SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR189784SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
TAX577738(Rovira)
total RNA. (breast)
TAX577745(Rovira)
total RNA. (breast)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
.......................................................................................................................................................................TTTGTTTTTTTGTTTTTTTGTTCCAC......................................................... 261.000.00---1.00-------------------
.......................................................................................................................................................AATATAAGGTTTTTTTCTT................................................................................ 191.000.00-------------------1.00---
.......................................................................................................................................................................TTTGTTTTTTTGTTTTTTTGTTTTCGA........................................................ 271.000.00-----1.00-----------------
................................................................................................................................................................AAAAACAAAAAAACAAAAAAAAAA.................................................................. 2401.001.00--------------1.00--------
..................................................TTTAATCTTCTGATTGGC...................................................................................................................................................................................... 181.000.00---------------------1.00-
.........................................................................................ATTTGTTTGGCCAGTTTTT.............................................................................................................................................. 191.000.001.00----------------------
..............................................................................................................................................................GGTTTTTTTTTTGTTTTTTTGTTAAAA................................................................. 271.000.00---1.00-------------------
................................................................................................................................................................TTTTTTTTTTGTTTTTTTGTTTTTTAA............................................................... 271.000.00---1.00-------------------
............................................................................AATGATAGTGCCTATTGAC........................................................................................................................................................... 191.000.00------1.00----------------
..................................................................................................................................................................TTTTTTTTGTTTTTTTGTTTTTTTTAA............................................................. 271.000.00-----1.00-----------------
....................................................................................................................................................TATAATATAAGGTTTTAA.................................................................................... 181.000.00----------1.00------------