ID: uc003elh.1_intron_0_0_chr3_128651841_r.3p
GENE: AK125726(4)
chr3:128651791-128652040-


(10)
B-CELL 		(10)
BRAIN 		(15)
BREAST 		(17)
CELL-LINE 		(2)
CERVIX 		(14)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(7)
SKIN 		(1)
TESTES 		(3)
UTERUS 		(1)
XRN.ip

Sense strand
TGGGGAGAAGATGGAGAAGGAGGCTTTTGCCAGGAGCCCAGGCTCAGCAGACTGGAATTGGAGCTCTTTAGTCACAAGCTCCAGGACTTGGGACCAGCTAAGCAGCCTCTGAGTGTTCATTTCCTGCTGTAGGATGGGAGTGATTACACCTGTCTTGCAAGGTAGGAGAGGTTCAGTGGGGCAGTGGTTCTTTGTTCCAGGATCCACGACATCTGCTATAACAGCACCACCCTCTGGGACGTGACGGTGA
...............................................................................................................................(((((((((((.((....)).))))))))))).((.((.((((..(((.((...)).)))..)))).))))....................................................
............................................................................................................................125........................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		TAX577588(Rovira)
total RNA. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577580(Rovira)
total RNA. (breast)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577742(Rovira)
total RNA. (breast)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		TAX577738(Rovira)
total RNA. (breast)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		TAX577589(Rovira)
total RNA. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577579(Rovira)
total RNA. (breast)		TAX577744(Rovira)
total RNA. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		TAX577746(Rovira)
total RNA. (breast)		SRR040029(GSM532914)
G026T. (cervix)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)		SRR038855(GSM458538)
D10. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR040035(GSM532920)
G001T. (cervix)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189783SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.................................................................................................................................TAGGATGGGAGTGATAGG.......................................................................................................1882.000.001.005.002.002.006.003.001.006.00--3.006.001.003.001.001.001.003.002.002.001.00-1.001.001.002.001.003.001.002.00-1.001.00-2.001.00---1.00-1.00--2.001.00-1.00-1.001.00---1.00-----1.001.00--1.00--1.00-----1.00--1.00----
.................................................................................................................................TAGGATGGGAGTGATAGGT......................................................................................................1965.000.009.001.003.006.003.001.003.001.004.003.00--2.001.001.001.002.00--1.001.001.001.002.001.001.002.00--1.001.00--2.00-1.00-------2.00-----------1.001.001.001.00-------1.00---1.00-1.00--------
.................................................................................................................................TAGGATGGGAGTGATAG........................................................................................................1724.000.00--3.00--2.002.00-----1.001.001.002.00-1.001.001.001.002.00--2.00-------1.00---2.00--------------------------------------1.00-----
.................................................................................................................................TAGGATGGGAGTGATAGGA......................................................................................................1916.000.00------2.00-1.002.001.00-1.00-1.00-------1.00-----1.00-1.00----------1.00---1.00--1.00-------------------1.00--1.00---------
.................................................................................................................................TAGGATGGGAGTGATAGGG......................................................................................................197.000.00-1.001.00--1.00--------1.001.00-1.00---1.00-----------------------------------------------------------
.................................................................................................................................TAGGATGGGAGTGATAGA.......................................................................................................185.000.001.001.00---1.00---1.00---------------------1.00-------------------------------------------------
.................................................................................................................................TAGGATGGGAGTGATAGC.......................................................................................................183.000.00----------1.00---------1.00--1.00---------------------------------------------------------
.................................................................................................................................TAGGATGGGAGTGATAGT.......................................................................................................183.000.00------------------1.00-----------1.00--------1.00-----------------------------------------
.................................................................................................................................TAGGATGGGAGTGATAAA.......................................................................................................183.000.00-1.00--------------2.00----------------------------------------------------------------
.................................................................................................................................TAGGATGGGAGTGATAAAA......................................................................................................192.000.00----------------------------1.00------------------------------------------------1.00---
..........ATGGAGAAGGAGGCTATTA.............................................................................................................................................................................................................................192.000.00-2.00-------------------------------------------------------------------------------
...............................................................................................................................................................AGGTAGGAGAGGTTCAGTGGGGCA...................................................................2412.002.00-------------------------------------2.00-------------------------------------------
.................................................................................................................................TAGGATGGGAGTGATCGG.......................................................................................................182.000.00---2.00-----------------------------------------------------------------------------
.....................................................................................................................................................................................CAGTGGTTCTTTGTTGAT...................................................181.000.00------------------------------------------1.00--------------------------------------
.................................................................................................................................TAGGATGGGAGTGATAGGC......................................................................................................191.000.001.00--------------------------------------------------------------------------------
.................................................................................................................................TAGGATGGGAGTGATA.........................................................................................................161.000.00-----------------------------------------------------------1.00---------------------
...........................................................................................................................................................................................................CCACGACATCTGCTATCT.............................181.000.00--------------------------------------------------------------------------1.00------
.................................................................................................................................TAGGATGGGAGTGATACCA......................................................................................................191.000.00-----------------------------------------------------------------1.00---------------
.................................................................................................................................TAGGATGGGAGTGATAAGA......................................................................................................191.000.00--------1.00------------------------------------------------------------------------
.................................................................................................................................TAGGATGGGAGTGATAGTA......................................................................................................191.000.00------------1.00--------------------------------------------------------------------
.................................................................................................................................TAGGATGGGAGTGATATGA......................................................................................................191.000.00--------1.00------------------------------------------------------------------------
.................................................................................................................................TAGGATGGGAGTGATAGAA......................................................................................................191.000.00----------------------1.00----------------------------------------------------------
......................................................................................................................................................................AGAGGTTCAGTGGGGCTG..................................................................181.000.00--------------------------------------1.00------------------------------------------
.............................................................................................................................................................CAAGGTAGGAGAGGTTCAGTGGAA.....................................................................241.000.00----------------------------------------------------1.00----------------------------
.................................................................................................................................TAGGATGGGAGTGATATTT......................................................................................................191.000.00---------1.00-----------------------------------------------------------------------
.................................................................................................................................TAGGATGGGAGTGATTTG.......................................................................................................181.000.00--1.00------------------------------------------------------------------------------
.................................................................................................................................................................................GGGGCAGTGGTTCTTTGTT......................................................1911.001.00------------------------------------------------------------------------------1.00--
.........................................................................................................................................................................GGTTCAGTGGGGCAGTGG...............................................................1811.001.00--------------------------------------------------------------1.00------------------
...................................................................................................................................................................AGGAGAGGTTCAGTGGCACG...................................................................201.000.00--------------------------------------1.00------------------------------------------

Antisense strand
TGGGGAGAAGATGGAGAAGGAGGCTTTTGCCAGGAGCCCAGGCTCAGCAGACTGGAATTGGAGCTCTTTAGTCACAAGCTCCAGGACTTGGGACCAGCTAAGCAGCCTCTGAGTGTTCATTTCCTGCTGTAGGATGGGAGTGATTACACCTGTCTTGCAAGGTAGGAGAGGTTCAGTGGGGCAGTGGTTCTTTGTTCCAGGATCCACGACATCTGCTATAACAGCACCACCCTCTGGGACGTGACGGTGA
...............................................................................................................................(((((((((((.((....)).))))))))))).((.((.((((..(((.((...)).)))..)))).))))....................................................
............................................................................................................................125........................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		TAX577588(Rovira)
total RNA. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577580(Rovira)
total RNA. (breast)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577742(Rovira)
total RNA. (breast)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		TAX577738(Rovira)
total RNA. (breast)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		TAX577589(Rovira)
total RNA. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577579(Rovira)
total RNA. (breast)		TAX577744(Rovira)
total RNA. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		TAX577746(Rovira)
total RNA. (breast)		SRR040029(GSM532914)
G026T. (cervix)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)		SRR038855(GSM458538)
D10. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR040035(GSM532920)
G001T. (cervix)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189783SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.................................................................................................................................................ACACCTGTCTTGCAAGGA....................................................................................... 181.000.00-----------------------------------------------------1.00---------------------------
............................................................................................................................TGCTGTAGGATGGGAGTA............................................................................................................ 181.000.00---------------------------------------------------1.00-----------------------------
..................................................................................AGGACTTGGGACCAGTC....................................................................................................................................................... 171.000.00----------------------------------------------1.00----------------------------------
.........................................................................................................TACAGCAGGAAATGAACACTCAGAGG....................................................................................................................... 2611.001.00----------------------------------------1.00----------------------------------------
..............................................TGTGACTAAAGAGCTCCAATTCCAGTCTGC.............................................................................................................................................................................. 3011.001.00---------------------------------------------------------------1.00-----------------
............................................................................................................TACAGCAGGAAATGAACACTCAG....................................................................................................................... 2311.001.00---------------------------------------------------------------------1.00-----------
................................................................................................................................................................................................................................CACCACCCTCTGGGAGC......... 171.000.00------------------------------------------1.00--------------------------------------
.................................................................................................................................................................................................TAGCAGATGTCGTGGATCCTGGAAC................................ 2511.001.00----------------------------------------1.00----------------------------------------
.................................................................................................................................................ACACCTGTCTTGCAAGGAA...................................................................................... 191.000.00----------1.00----------------------------------------------------------------------
......................................................................................................................................................................................................................GGTGGTGCTGTTATAGC................... 1720.500.50--------------------------------------------------------------------------------0.50
....................................................................................................................................................................CCCCACTGAACCTCTCC..................................................................... 1720.500.50-------------------------------------------------------------------------------0.50-