ID: uc003ejm.2_intron_8_0_chr3_127299007_r.3p
GENE: (1)
chr3:127298957-127299206-


(2)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(2)
AGO2.ip 		(8)
B-CELL 		(1)
BRAIN 		(3)
BREAST 		(27)
CELL-LINE 		(2)
CERVIX 		(1)
FIBROBLAST 		(2)
HELA 		(4)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(7)
SKIN 		(3)
UTERUS 		(1)
XRN.ip

Sense strand
GATGGGGGACTGGGCCCCTGCCTGGGGGATTGGGTCGTGACCTGTGTGGAGCCCCACACTGAGCTGCAGTGGGTGGGGAGGGTGGTTTACAGGGGTGCTCTGTGCAGCCCCTCTGATTTTCCCCTGGGAGTCCCAGGTCCAGGGGAAGGAGGACAGTGGCCCAGGCCACACAGCTCACTGGGCGGCTCTCACTCCCCCAGGGCTGGCTGCTGGCGGGATGGACACCCTGGAGGAGGTGACTTGGGCCAAT
.......................................................................................................................................(((((.(((...((((((.(((.((((((((......))...)))))).))).)).))))))).)))))..............................................
.......................................................................................................................................136....................................................................207.........................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR038856(GSM458539)
D11. (cell line)		SRR189784SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189787SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR040025(GSM532910)
G613T. (cervix)		SRR038854(GSM458537)
MM653. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038859(GSM458542)
MM386. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR038860(GSM458543)
MM426. (cell line)		SRR189786SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		TAX577745(Rovira)
total RNA. (breast)
............................................................................................................................................AGGGGAAGGAGGACAGTGGCCCAGT.....................................................................................2517.002.003.00------1.00-----1.00-------1.00---------------------------1.00-------------
...........................................................................................................................................CAGGGGAAGGAGGACAGTGG...........................................................................................2026.506.50-2.502.50---0.50------------------------------------------------0.50-0.50-----
..........................................................................................................................................CCAGGGGAAGGAGGACAGTGG...........................................................................................2115.005.00--2.00-----1.00-1.00------------------------------------1.00---------------
...........................................................................................................................................CAGGGGAAGGAGGACAGTGGCCCAAT.....................................................................................265.000.00-----2.00-----2.00---------------1.00-----------------------------------
............................................................................................................................................AGGGGAAGGAGGACAGTGGCC.........................................................................................2114.004.00---2.001.00-----------------------------------1.00----------------------
.........................................................................................................................................TCCAGGGGAAGGAGGACAGTGG...........................................................................................2213.003.00------------1.00----------1.00--------------------------1.00------------
............................................................................................................................................AGGGGAAGGAGGACAGTGG...........................................................................................1923.003.00-1.50-------------0.50---------------------------------------------0.500.50
..........................................................................................................................................CCAGGGGAAGGAGGACAGTGGAAA........................................................................................2413.005.00-3.00-------------------------------------------------------------
...........................................................................................................................................CAGGGGAAGGAGGACAGT.............................................................................................1822.002.00-----------------1.00--------------------------------------0.50--0.50---
.....................................................................................................................................................................................GCGGCTCTCACTCCCCCAGAAC...............................................222.000.002.00--------------------------------------------------------------
...........................................................................................................................................CAGGGGAAGGAGGACAGTGGC..........................................................................................2112.002.00---------2.00-----------------------------------------------------
............................................................................................................................................AGGGGAAGGAGGACAGTGGC..........................................................................................2012.002.00----2.00----------------------------------------------------------
............................................................................................................................................AGGGGAAGGAGGACAGTGGCCCAG......................................................................................2412.002.00----------------------------------1.00-----------1.00----------------
................................................................................................................................................................................................................................CCCTGGAGGAGGTGACTTGGG.....2112.002.00---2.00-----------------------------------------------------------
..................................................................................................................................................................AGGCCACACAGCTCACTGG.....................................................................1931.671.67--------------1.67------------------------------------------------
...........................................................................................................................................CAGGGGAAGGAGGACAGTGGCCCAAA.....................................................................................261.000.00--------------------1.00------------------------------------------
............................................................................................................................................AGGGGAAGGAGGACAGTGGCCCAGA.....................................................................................2511.002.00------------------------------------------------1.00--------------
..........................................................................................................................................CCAGGGGAAGGAGGACAGTGGCC.........................................................................................2311.001.001.00--------------------------------------------------------------
............................................................................................................................................AGGGGAAGGAGGACAGTGGCCCAGGT....................................................................................261.000.00-------------------------------------1.00-------------------------
..........................................................CTGAGCTGCAGTGGGTGGGGAGGGTGG.....................................................................................................................................................................2711.001.00---------------------------------------------1.00-----------------
.................................................................................................................................................AAGGAGGACAGTGGCCCAGGT....................................................................................211.000.00------------------------------------------1.00--------------------
....................................................................................................................................................................................................CCAGGGCTGGCTGCTGGCGGGATGGACACC........................3011.001.00-------------------------------------------1.00-------------------
..............................................................................................................................................................................................ACTCCCCCAGGGCTGGAAG.........................................191.000.00--------------------------------1.00------------------------------
............................................................................................................................................AGGGGAAGGAGGACAGTGGCCC........................................................................................2211.001.00-----------------------------------------------------1.00---------
......................................................................GGGTGGGGAGGGTGG.....................................................................................................................................................................1501.001.00---------------------------------------1.00-----------------------
...........................................................................................................................................................................................................................GGACACCCTGGAGGAGGTGA...........2011.001.00---------------------------------1.00-----------------------------
...........................................................................................................................................CAGGGGAAGGAGGACAGTGGCC.........................................................................................2211.001.00----------------------------------------------------1.00----------
...........................................................................................................................................CAGGGGAAGGAGGACAGTGGCCCATC.....................................................................................261.000.00------------------------1.00--------------------------------------
.........................................................................................................................................TCCAGGGGAAGGAGGACAGTGGA..........................................................................................2311.003.00----------------------1.00----------------------------------------
.........................................................................................................................................TCCAGGGGAAGGAGGACAGGGA...........................................................................................221.000.001.00--------------------------------------------------------------
............................................................................................................................................AGGGGAAGGAGGACAGTGGCCCAAGA....................................................................................2611.001.00------------------------------------1.00--------------------------
............................................................................................................................................AGGGGAAGGAGGACAGTG............................................................................................1821.001.00----0.50-----------------------------------------------------0.50----
.........................................................................................................................................TCCAGGGGAAGGAGGACAGGGG...........................................................................................221.000.00------------1.00--------------------------------------------------
............................................................................................................................................AGGGGAAGGAGGACAGTGGCCCAGC.....................................................................................2511.002.00------------------1.00--------------------------------------------
............................................................................................................................................AGGGGAAGGAGGACAGTGGCCAA.......................................................................................2311.004.00---------------------------------------------------1.00-----------
............................................................................................................................................AGGGGAAGGAGGACAGTGGCCCAT......................................................................................2411.001.00-----------------------------------1.00---------------------------
..........................................................................................................................................CCAGGGGAAGGAGGACAGTGGCCCAAT.....................................................................................271.000.00--------1.00------------------------------------------------------
................................................................................................................................................................................................................GCTGGCGGGATGGACACC........................1811.001.00------------------------------1.00--------------------------------
..................................................................................................................................................AGGAGGACAGTGGCCACCC.....................................................................................191.000.00-------------------------------1.00-------------------------------
............................................................................................................................................AGGGGAAGGAGGACAGTGGCCCTA......................................................................................2411.001.00-----------------------------1.00---------------------------------
..........................................................................................................................................CCAGGGGAAGGAGGACAGTGA...........................................................................................211.000.00------1.00--------------------------------------------------------
............................................................................................................................................AGGGGAAGGAGGACAGTGGCCCAA......................................................................................2411.001.00-------------------------1.00-------------------------------------
.........................................................................................................................................................................................................................ATGGACACCCTGGAGGATG..............191.000.00-----------------------------------------1.00---------------------
.........................................................................................................................................TCCAGGGGAAGGAGGACAGTGA...........................................................................................221.000.001.00--------------------------------------------------------------
..................................................................................................................................................................................................................................CTGGAGGAGGTGACTCTGA.....191.000.00--------------------------1.00------------------------------------
............................................................................................................................................AGGGGAAGGAGGACAGTGGAAA........................................................................................2221.003.00---------------1.00-----------------------------------------------
...........................................................................................................................................CAGGGGAAGGAGGACAGTGGCAA........................................................................................2311.002.00--------------------------------------1.00------------------------
.............................................................................................................................................................................................CACTCCCCCAGGGCTTTAG..........................................191.000.00----------------1.00----------------------------------------------
.........................................................................................................................................TCCAGGGGAAGGAGGACAGT.............................................................................................2011.001.00--------------------------------------------1.00------------------
............................................................................................................................................AGGGGAAGGAGGACAGTGGCCCA.......................................................................................2311.001.00-------------1.00-------------------------------------------------
...........................................................................................................................................CAGGGGAAGGAGGACAGTGGCCCAGT.....................................................................................261.000.00-------1.00-------------------------------------------------------
.............................................................AGCTGCAGTGGGTGGTGG...........................................................................................................................................................................181.000.00----------------------------1.00----------------------------------
............................................................................................................................................AGGGGAAGGAGGACAGT.............................................................................................1730.670.67------------------------------------------------------0.67--------
...........................................................................................................................................CAGGGGAAGGAGGACAGTGGAA.........................................................................................2220.506.50------0.50--------------------------------------------------------
............................................................................................................................................AGGGGAAGGAGGACAGTGA...........................................................................................1920.501.00------------------------------------------------------------0.50--
............................................................................................................................................AGGGGAAGGAGGACAGTGGAA.........................................................................................2120.503.00--0.50------------------------------------------------------------
...........................................................................................................................................CAGGGGAAGGAGGACAGCGG...........................................................................................2040.250.25-0.25-------------------------------------------------------------
...........................................................................................................................................CAGGGGAAGGAGGACAG..............................................................................................1740.250.25------------------------------------------------------0.25--------

Antisense strand
GATGGGGGACTGGGCCCCTGCCTGGGGGATTGGGTCGTGACCTGTGTGGAGCCCCACACTGAGCTGCAGTGGGTGGGGAGGGTGGTTTACAGGGGTGCTCTGTGCAGCCCCTCTGATTTTCCCCTGGGAGTCCCAGGTCCAGGGGAAGGAGGACAGTGGCCCAGGCCACACAGCTCACTGGGCGGCTCTCACTCCCCCAGGGCTGGCTGCTGGCGGGATGGACACCCTGGAGGAGGTGACTTGGGCCAAT
.......................................................................................................................................(((((.(((...((((((.(((.((((((((......))...)))))).))).)).))))))).)))))..............................................
.......................................................................................................................................136....................................................................207.........................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR038856(GSM458539)
D11. (cell line)		SRR189784SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189787SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR040025(GSM532910)
G613T. (cervix)		SRR038854(GSM458537)
MM653. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038859(GSM458542)
MM386. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR038860(GSM458543)
MM426. (cell line)		SRR189786SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		TAX577745(Rovira)
total RNA. (breast)
...................................................................................................................................CCCAGGTCCAGGGGAACGC.................................................................................................... 191.000.00-------------------1.00-------------------------------------------
....................................................................CCCCTGTAAACCACCCTCCCCACCCAC........................................................................................................................................................... 2711.001.00----------1.00----------------------------------------------------