ID: uc003ejl.2_intron_2_0_chr3_127294349_r
GENE: TPRA1(7)
chr3:127294299-127294641-


(1)
AGO1.ip
(1)
AGO3.ip
(4)
BRAIN
(8)
BREAST
(10)
CELL-LINE
(2)
CERVIX
(1)
HEART
(3)
HELA
(4)
LIVER
(2)
OTHER
(21)
SKIN
(1)
UTERUS

Sense strand
GGTGGTCATCCTTCCCAAGACCCCGCTGAAGGAGCGCATCTCCCTGCCTTGTGAGCAGCTGGCCGGCGGCTCTGGGACAGGCGGGGATGGGAGGGAGTCTACCGGGCCACTGTAGAGCTGGTAGCTGGGAGCTGGAGCTGTAGAGTTCCAGGCTGGGAGCTGGAGAGCCCTGGGTGAGAGGGAGGCCTAGAGGGGCCCCGGGGGACACACCAGGCTTGAGGGTAGTAGGTGCTGGAGGCAGAGCCTGGCCTGTCCAGGGTGGGACCTCACGACCCACCCTGTCCGGCCCCCAGCTCGGAGGAGCTTCTACGTGTATGCGGGCATCCTGGCACTGCTCAACCTA
.........................................................................................................................................(((........))).(((((.(((((((((.((((((((....((.(((((....)))))))......))).))))))))..((((..(((((.(((....))).)))))))))...(((((((((.........))))))))))))))).)))))..................................................
.......................................................................................................................................136..........................................................................................................................................................293................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
TAX577738(Rovira)
total RNA. (breast)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR040028(GSM532913)
G026N. (cervix)
SRR189783SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
TAX577743(Rovira)
total RNA. (breast)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189784DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577588(Rovira)
total RNA. (breast)
DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
TAX577744(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR040035(GSM532920)
G001T. (cervix)
DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR343334SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.............................................................................................................................................................................................................................GTAGTAGGTGCTGGAGGCAGAGCCTGGCCTGTCCAGGGTGGGACCTCACGACCCACCCTGTCCGGCCCCC....................................................7014.004.004.00-----------------------------------------------------------
............................................................................................................................................................................................................................................................................ACGACCCACCCTGTCCGGC........................................................1913.003.00--1.00---------------------------1.00-------------1.00---------------
............................................................................................................................................................................................................................................................................ACGACCCACCCTGTCCGGCCCC.....................................................2213.003.00------1.00------------------1.00----------1.00-----------------------
.....................................................................................................................................................................................................................................................TGGCCTGTCCAGGGTGGGACT.............................................................................2112.001.00--------------1.00--------------------------1.00------------------
..................................................................................................................................................................................AGGGAGGCCTAGAGGGGCCCCGGGGGAC.........................................................................................................................................2812.002.00---------1.00-------------------------------------------1.00------
.....................CCCGCTGAAGGAGCGCGGCC..............................................................................................................................................................................................................................................................................................................202.000.00-----2.00------------------------------------------------------
..............................................................................................................................................................................................AGGGGCCCCGGGGGACACACCAGGCTTGAGGG.........................................................................................................................3212.002.00-------2.00----------------------------------------------------
............................................................................................................................................TAGAGTTCCAGGCTGGTGGT.......................................................................................................................................................................................201.000.00----1.00-------------------------------------------------------
.....................................................................................................................................................................................................................................................TGGCCTGTCCAGGGTGGGACCTC...........................................................................2311.001.00----------------------1.00-------------------------------------
...............................................CTTGTGAGCAGCTGGCGAC.....................................................................................................................................................................................................................................................................................191.000.00----1.00-------------------------------------------------------
............................................................................................................................................................................................................................................................................ACGACCCACCCTGTCCGGCA.......................................................2011.003.00---------------------------------1.00--------------------------
.............................................................................................................................................................................................................................................................................CGACCCACCCTGTCCGGCCCC.....................................................2111.001.00-----------1.00------------------------------------------------
....................................................................................................................................................................................................................................................CTGGCCTGTCCAGGGTGGGACCTC...........................................................................2411.001.00---------------------------------------------------1.00--------
...................................................................................................................................................................................................................................................CCTGGCCTGTCCAGGGTGGGACCTCACG........................................................................2811.001.00----------------------------1.00-------------------------------
..................................................................................................................................................................................AGGGAGGCCTAGAGGGGCCCCGGGGTAC.........................................................................................................................................281.000.00---------1.00--------------------------------------------------
..............................................................CCGGCGGCTCTGGGACCGG......................................................................................................................................................................................................................................................................191.000.00------------------------------------------1.00-----------------
......................................................................................................................................................................................................................................................................................................TCGGAGGAGCTTCTAC.................................1611.001.00------------------------1.00-----------------------------------
.......................................................................................................................................................................................GGCCTAGAGGGGCCCTGGT.............................................................................................................................................191.000.00-----------------------------1.00------------------------------
.......................................................................................TGGGAGGGAGTCTACCGGGCCA..........................................................................................................................................................................................................................................2211.001.00---------------------------------------------1.00--------------
...............................................................................................................................................................................................................................AGTAGGTGCTGGAGGCAGAGCCTGGCCTGTCCAGGGTGGGACCTCACGACCCACCCTGTCCGGCCCCCAG..................................................7011.001.00----------------1.00-------------------------------------------
......................................................................................................CGGGCCACTGTAGAGCACTG.............................................................................................................................................................................................................................201.000.00--------1.00---------------------------------------------------
.................................................................................................................................................................................................................................................................................CCACCCTGTCCGGCCCAGT...................................................191.000.00------------------------------------------------------1.00-----
.....................................................................................................................................................................................................................................................TGGCCTGTCCAGGGTGGGACCT............................................................................2211.001.00------------1.00-----------------------------------------------
.............CCCAAGACCCCGCTGAAGGAGC....................................................................................................................................................................................................................................................................................................................2211.001.00-------------------------------------------1.00----------------
....................................................................................................................................TGGAGCTGTAGAGTTTTG.................................................................................................................................................................................................181.000.00-----------------1.00------------------------------------------
.....................................................................................................................................................................................................................................................TGGCCTGTCCAGGGTGGGACCTTT..........................................................................2411.001.00-----------1.00------------------------------------------------
....................................................................................................................................................................................................................GGCTTGAGGGTAGTAGGTGCTGGAGGCAGAG....................................................................................................3111.001.00---1.00--------------------------------------------------------
.....................................................................................................................................................................................................................................................TGGCCTGTCCAGGGTGGGAC..............................................................................2011.001.00-1.00----------------------------------------------------------
..........................................................................................................................................TGTAGAGTTCCAGGCTGGGAG........................................................................................................................................................................................2111.001.00--------------------1.00---------------------------------------
............................................................................................................................................................................................................................................................................ACGACCCACCCTGTCCGGCCCCAA...................................................2411.003.00---1.00--------------------------------------------------------
....................................................................................................................................................................................................................................................CTGGCCTGTCCAGGGTGGGAC..............................................................................2111.001.00---------------------1.00--------------------------------------
.......................................................................................................................................................................CCCTGGGTGAGAGGGTTTC.............................................................................................................................................................191.000.00--------------------------------------------------1.00---------
...........................................................................................................................................................................................................................................................................CACGACCCACCCTGTCCGGC........................................................2011.001.00------1.00-----------------------------------------------------
......................................................GCAGCTGGCCGGCGGCTGTCT............................................................................................................................................................................................................................................................................211.000.00--------------------------1.00---------------------------------
....................................................................................................................................................................................................................................................CTGGCCTGTCCAGGGTGGGGC..............................................................................211.000.00---------------------------------------1.00--------------------
............................................................................................................................................................................................................................................................................ACGACCCACCCTGTCCGGCCCT.....................................................221.000.00-------------------------------------------------------1.00----
.....................................................................................................................................................................................................................................................TGGCCTGTCCAGGGTGGGACC.............................................................................2111.001.00-----------------------------------1.00------------------------
.................................................................................................................................................................................................................................................................GGTGGGACCTCACGAGTC....................................................................1821.000.50----------------------------------1.00-------------------------
......................................................................................................................................................................................................................................................GGCCTGTCCAGGGTGGGAC..............................................................................1911.001.00-------------------------------1.00----------------------------
............................................................................................................................................................................................................................................................................ACGACCCACCCTGTCCGGCCCCTAAA.................................................2611.003.00----------------------------------------1.00-------------------
.......................................................................................................................................................................................................................................................................................................................TGTATGCGGGCATCCTGGCACT..........2211.001.00------------------------------------------------1.00-----------
.....................................................................................................................................................................................................................................................TGGCCTGTCCAGGGTGGAT...............................................................................191.000.00-----------------------------------------------1.00------------
...................................................................................................................................................................................................................................................................................................................TACGTGTATGCGGGCATCCTGG..............2211.001.00-------------------1.00----------------------------------------
............................................................................................................................................................................................................................................................................ACGACCCACCCTGTCCGGCCCTAT...................................................241.000.00----------------------------------------------------1.00-------
............................................................................................................................................................................................................................................................................ACGACCCACCCTGTCCGGCCCTT....................................................231.000.00--------------------------------1.00---------------------------
............................................................................................................................................................................................................................................................................ACGACCCACCCTGTCCGGCCAAA....................................................231.000.00----------------------------------------------1.00-------------
............................................................................................................................................................................................................................................................................................................................GCGGGCATCCTGGCACTGC........1911.001.00--1.00---------------------------------------------------------
.................................................................................................................................................................................................................................................................GGTGGGACCTCACGA.......................................................................1520.500.50---------------------------------------------------------0.50--
................................................................................................................................................GTTCCAGGCTGGGAGC.......................................................................................................................................................................................1620.500.50-------------0.50----------------------------------------------
....................................................................................................ACCGGGCCACTGTAG....................................................................................................................................................................................................................................1530.330.33--------------0.33---------------------------------------------
.........................................................................................................................................................................CTGGGTGAGAGGGAGGC.............................................................................................................................................................1760.170.17-----------------------------------------------------------0.17
............................................................................................................................................................................................................................................................TCCAGGGTGGGACCT............................................................................1580.120.12--------------0.12---------------------------------------------

Antisense strand
GGTGGTCATCCTTCCCAAGACCCCGCTGAAGGAGCGCATCTCCCTGCCTTGTGAGCAGCTGGCCGGCGGCTCTGGGACAGGCGGGGATGGGAGGGAGTCTACCGGGCCACTGTAGAGCTGGTAGCTGGGAGCTGGAGCTGTAGAGTTCCAGGCTGGGAGCTGGAGAGCCCTGGGTGAGAGGGAGGCCTAGAGGGGCCCCGGGGGACACACCAGGCTTGAGGGTAGTAGGTGCTGGAGGCAGAGCCTGGCCTGTCCAGGGTGGGACCTCACGACCCACCCTGTCCGGCCCCCAGCTCGGAGGAGCTTCTACGTGTATGCGGGCATCCTGGCACTGCTCAACCTA
.........................................................................................................................................(((........))).(((((.(((((((((.((((((((....((.(((((....)))))))......))).))))))))..((((..(((((.(((....))).)))))))))...(((((((((.........))))))))))))))).)))))..................................................
.......................................................................................................................................136..........................................................................................................................................................293................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
TAX577738(Rovira)
total RNA. (breast)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR040028(GSM532913)
G026N. (cervix)
SRR189783SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
TAX577743(Rovira)
total RNA. (breast)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189784DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577588(Rovira)
total RNA. (breast)
DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
TAX577744(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR040035(GSM532920)
G001T. (cervix)
DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR343334SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.........................................................................GGGACAGGCGGGGATGC............................................................................................................................................................................................................................................................. 174.000.00-------------1.00---------1.00---1.00---------1.00----------------------
....................................................................................................ACCGGGCCACTGTAGAC.................................................................................................................................................................................................................................. 171.000.00-1.00----------------------------------------------------------
................................................................................................................................................................................................GGGCCCCGGGGGACACG...................................................................................................................................... 171.000.00----------1.00-------------------------------------------------
................................................................................................................................................................................................GGGCCCCGGGGGACAG....................................................................................................................................... 161.000.00------------------1.00-----------------------------------------
..............................................................................................................................................................CACCCAGGGCTCTCCAGC....................................................................................................................................................................... 1811.001.00--------1.00---------------------------------------------------
....................................................................................................ACCGGGCCACTGTAGAG.................................................................................................................................................................................................................................. 171.000.00-1.00----------------------------------------------------------
..........................................................................................................................................................................TGGGTGAGAGGGAGGAGTT.......................................................................................................................................................... 191.000.00-------------------------------------------------1.00----------
............................AAGGAGCGCATCTCCCTTAG....................................................................................................................................................................................................................................................................................................... 201.000.00---------------1.00--------------------------------------------
...........................................................................................................................................................................................................................................................................CACGACCCACCCTGTGC........................................................... 171.000.00------------1.00-----------------------------------------------
..............................................................................AGGCGGGGATGGGAGCA........................................................................................................................................................................................................................................................ 171.000.00----------1.00-------------------------------------------------
................................................................................................................................................................................................GGGCCCCGGGGGACAGAA..................................................................................................................................... 181.000.00--------------------------------------1.00---------------------
............................................................................................................................................................................................CCCCCGGGGCCCCTCT........................................................................................................................................... 1620.500.50--------------------------------------------------------0.50---
...........................................................................CCATCCCCGCCTGTC............................................................................................................................................................................................................................................................. 1540.250.25----------------------------------------------------------0.25-
.......................................................................................................................................................................................................................................CCAGGCTCTGCCTCCAG............................................................................................... 1770.140.14---------------0.14--------------------------------------------