ID: uc003ejj.2_intron_2_0_chr3_127074784_r
GENE: (2)
chr3:127074734-127075143-


(1)
AGO1.ip
(1)
AGO1.ip OTHER.mut
(1)
BRAIN
(13)
CELL-LINE
(1)
CERVIX
(3)
HEART
(1)
HELA
(3)
LIVER
(2)
OTHER
(1)
RRP40.ip
(16)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
TGCTTTTCATTTTACAGGCTCATAGGAGGAATGGACTTGCCTTGTCTCAGGTAAGACTTTGGACTTAGACTTCTGAGTTAATGCTGGAATGAGTTAAGACTTTGGGGGACTGTTGGAAGGCCATGGTTGTGTTTTGAAATGTGAGGACATAAGATTTGGGAGGGGCCAGGGGCAGAATGACATGGTTTGGCTCTGTGTCCCACCCAAATCTCACCTTGAATTGTAATAATCCCCACTTGTCAAGGGCGGGATCAGGTGGAGATAATTGAATTATGGGAGTGGTTTCCCCCATGCTGGTCTCATGATAGTAAGTTCTCATGAGATCTGCTGGTTTTATAAGGGGTTTCCTCCTTTGCTCAGCTCGAATTCTCTCTCCTGCCACCCTGAGAAGAGGTGCCTTCCACCATGAT
........................................................((((.(((.....((((.(((((...(((......)))...))))).))))....))).))))...................................................................................................................................................................................................................................................................................................
..................................................51..........................................................................127.........................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040035(GSM532920)
G001T. (cervix)
DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
........................................................................................................GGGGACTGTTGGAAGTCTG...............................................................................................................................................................................................................................................................................................195.000.002.00--------2.00-1.00------------------------------
........................................................CTTTGGACTTAGACTCTG................................................................................................................................................................................................................................................................................................................................................185.000.00------2.00-------1.00---1.00------------------1.00----
.....................................................................................................TTGGGGGACTGTTGGAAGTCTG...............................................................................................................................................................................................................................................................................................225.000.002.00----------1.00--------------1.00-------1.00-------
..................................................................................................ACTTTGGGGGACTGTTGGAAGTCTG...............................................................................................................................................................................................................................................................................................253.000.001.00--1.00------------------1.00-------------------
......................................................................................................TGGGGGACTGTTGGAAGTCTG...............................................................................................................................................................................................................................................................................................213.000.00-----2.00--------------------------1.00---------
........................................................CTTTGGACTTAGACTTCTG...............................................................................................................................................................................................................................................................................................................................................1932.002.00-------2.00----------------------------------
.....................................................................................................................................................................................ATGGTTTGGCTCTGTAGAA..................................................................................................................................................................................................................192.000.00----------2.00-------------------------------
...........................................................................................AGTTAAGACTTTGGGGGACTGTAAA......................................................................................................................................................................................................................................................................................................252.000.00-2.00----------------------------------------
..............................................................................................TAAGACTTTGGGGGACTGTTGGAAGTCTG...............................................................................................................................................................................................................................................................................................292.000.00---1.00------------------------1.00-------------
...........................................................................................................................................................................................................................................................................................................................................TTTTATAAGGGGTTTAGG.............................................................181.000.00-------------1.00----------------------------
...........................................................................................................................................................TTGGGAGGGGCCAGGGGCAGAACG.......................................................................................................................................................................................................................................241.000.00----1.00-------------------------------------
........................................................................................................................................................GATTTGGGAGGGGCCAGGGGCTGT..........................................................................................................................................................................................................................................241.000.00---------------------------1.00--------------
..............................................................................................TAAGACTTTGGGGGATAAG.........................................................................................................................................................................................................................................................................................................191.000.00-----------------1.00------------------------
....................................................................................TGGAATGAGTTAAGACTTTGGGTGCC............................................................................................................................................................................................................................................................................................................261.000.00-1.00----------------------------------------
................................................................................................AGACTTTGGGGGACTGTTGGAAGTCTG...............................................................................................................................................................................................................................................................................................271.000.00---1.00--------------------------------------
......................................................................................GAATGAGTTAAGACTTTGGGGGACTGT.........................................................................................................................................................................................................................................................................................................2701.001.00--------1.00---------------------------------
.............................................................................................TTAAGACTTTGGGGGACTGTTGGAAGTCTG...............................................................................................................................................................................................................................................................................................301.000.00---1.00--------------------------------------
..........................................................................................................................................................TTTGGGAGGGGCCAGGGGCAGAACCG......................................................................................................................................................................................................................................261.000.00--1.00---------------------------------------
.........................................................................................TGAGTTAAGACTTTGGGGGACTGTTTTA.....................................................................................................................................................................................................................................................................................................281.000.00-1.00----------------------------------------
................................................................................................AGACTTTGGGGGACTGTTGGAAGGACGA..............................................................................................................................................................................................................................................................................................281.000.00--1.00---------------------------------------
..............................................................................................TAAGACTTTGGGGGACTGTTGGGAGT..................................................................................................................................................................................................................................................................................................261.000.00-1.00----------------------------------------
.........................................................................................................................................................................................................................................................................................................................TCTCATGAGATCTGCCGG...............................................................................181.000.00-------------------------1.00----------------
......................................................GACTTTGGACTTAGACTCTG................................................................................................................................................................................................................................................................................................................................................201.000.00------------1.00-----------------------------
................................................................................................AGACTTTGGGGGACTGTTGTAT....................................................................................................................................................................................................................................................................................................221.000.00---------------------------------1.00--------
.......................................................................................................................................................AGATTTGGGAGGGGCCAGGGGATT...........................................................................................................................................................................................................................................241.000.00-----------------------------1.00------------
...................................................................................................CTTTGGGGGACTGTTGGAAGTCTG...............................................................................................................................................................................................................................................................................................241.000.001.00-----------------------------------------
....................................................................................TGGAATGAGTTAAGACTTTGGGGGACAC..........................................................................................................................................................................................................................................................................................................281.000.00--------------------------------------1.00---
..................................................................................GCTGGAATGAGTTAAGACTTTTGG................................................................................................................................................................................................................................................................................................................241.000.00--------1.00---------------------------------
.......................................................................................................................................................AGATTTGGGAGGGGCCAGGGGAAA...........................................................................................................................................................................................................................................241.000.00-----------------------1.00------------------
....................................................................................................................................................................................CATGGTTTGGCTCTGTGTCCCTCTG.............................................................................................................................................................................................................251.000.00-----1.00------------------------------------
...............................................................................AATGCTGGAATGAGTTAAGACTTTGGGGGA.............................................................................................................................................................................................................................................................................................................3001.001.00---------------------1.00--------------------
..................................................................................................................................................................................................................................................................................................................................ATCTGCTGGTTTTATTTTA.....................................................................191.000.00----1.00-------------------------------------
..............................................................................................TAAGACTTTGGGGGACTGTTGGAAGGTAG...............................................................................................................................................................................................................................................................................................291.000.00------------------------------1.00-----------
.......................AGGAGGAATGGACTTACT.................................................................................................................................................................................................................................................................................................................................................................................181.000.00---------------------------------------1.00--
...........................................................TGGACTTAGACTTCTG...............................................................................................................................................................................................................................................................................................................................................1660.330.33------0.17----------------------------------0.17
......................................................................................................................................................................................................................................................CGGGATCAGGTGGAGA....................................................................................................................................................1630.330.33--------------0.33---------------------------
..........................................................TTGGACTTAGACTTCTG...............................................................................................................................................................................................................................................................................................................................................1740.250.25----------------------------------------0.25-

Antisense strand
TGCTTTTCATTTTACAGGCTCATAGGAGGAATGGACTTGCCTTGTCTCAGGTAAGACTTTGGACTTAGACTTCTGAGTTAATGCTGGAATGAGTTAAGACTTTGGGGGACTGTTGGAAGGCCATGGTTGTGTTTTGAAATGTGAGGACATAAGATTTGGGAGGGGCCAGGGGCAGAATGACATGGTTTGGCTCTGTGTCCCACCCAAATCTCACCTTGAATTGTAATAATCCCCACTTGTCAAGGGCGGGATCAGGTGGAGATAATTGAATTATGGGAGTGGTTTCCCCCATGCTGGTCTCATGATAGTAAGTTCTCATGAGATCTGCTGGTTTTATAAGGGGTTTCCTCCTTTGCTCAGCTCGAATTCTCTCTCCTGCCACCCTGAGAAGAGGTGCCTTCCACCATGAT
........................................................((((.(((.....((((.(((((...(((......)))...))))).))))....))).))))...................................................................................................................................................................................................................................................................................................
..................................................51..........................................................................127.........................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040035(GSM532920)
G001T. (cervix)
DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
.........................................................................................................................................................................................................................................................................................................................TCTCATGAGATCTGCTGGTTTTATCTC...................................................................... 272.000.00--2.00---------------------------------------
...........................................................................................................................................................................................TGGCTCTGTGTCCCACCCAAATCTCCC.................................................................................................................................................................................................... 271.000.00----1.00-------------------------------------
.............................................................................................................................................................................................................................................................................................................................ATGAGATCTGCTGGTTG............................................................................ 171.000.00------------------------1.00-----------------
.............................................................................................................................................................................................GCTCTGTGTCCCACCCAAATCTCTG.................................................................................................................................................................................................... 251.000.00------------1.00-----------------------------
.......................................................................................................................................................................................................CCACCCAAATCTCACCTAACA.............................................................................................................................................................................................. 211.000.00-------------------1.00----------------------
...............................................................................................................................................................................................................ATCTCACCTTGAATTGTAATAATCAGG................................................................................................................................................................................ 271.000.00-------------1.00----------------------------
...........................................................................................................................................................................................................................................................................................................................................................................GAATTCTCTCTCCTGCCACCCTGTG...................... 251.000.00--------------------1.00---------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................ATCATGGTGGAAGGC 1501.001.00------------------------------------1.00-----
.....................................................................................................................................................................................ATGGTTTGGCTCTGTGTTG.................................................................................................................................................................................................................. 191.000.00---------------1.00--------------------------
.........................................................................................................................................................................................................................................................................................................................TCTCATGAGATCTGCTGGTTTCATC........................................................................ 251.000.00----------------1.00-------------------------
...........................................................................................................................................................................................................................................................................................................................................................................GAATTCTCTCTCCTGCACC............................ 191.000.00-----------------------------------1.00------
..............................................................................................................................................................................................CTCTGTGTCCCACCCAAT.......................................................................................................................................................................................................... 181.000.00-------------------------------1.00----------