ID: uc003eie.3_intron_0_0_chr3_125635563_f.5p
GENE: (1)
chr3:125635513-125635762+


(1)
AGO2.ip
(1)
AGO3.ip
(2)
B-CELL
(5)
BREAST
(18)
CELL-LINE
(3)
CERVIX
(3)
HELA
(2)
LIVER
(3)
OTHER
(1)
RRP40.ip
(28)
SKIN

Sense strand
TGCAGCGCCGCTTTCTGGCGGCGCGCGCGCTGCGCTCCTTCCCCTGGCAGGTGGGCGGCGGGGCGAGCGGAGAGGCCCGCAGGGCTCGCGGGAGTCCAGGGGCAGACGGGATGGGTCTCCGTGCAGAAGCCCCCGACACGCCCGCCACGTGAGTGCCTGGGCTCCCGCCAGTCAGGTCCGCGCGACCCGGTCCCCATCCCTGGGGCCTGGCCAGAGTCGCTCACACCCTTCCTGCCCCGCGGGCTGGCGG
............................................((((.((((((....(((((..(((((((.((((...((((((....))))))..))))............)))))))......)))))......(((((.(((....)))..))))).)))))).))))............................................................................
............................................45................................................................................................................................175.........................................................................
SizePerfect hitTotal NormPerfect NormSRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577588(Rovira)
total RNA. (breast)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040028(GSM532913)
G026N. (cervix)
GSM532880(GSM532880)
G659T. (cervix)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029128(GSM416757)
H520. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
TAX577744(Rovira)
total RNA. (breast)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
TAX577745(Rovira)
total RNA. (breast)
DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)
TAX577743(Rovira)
total RNA. (breast)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
GSM339995(GSM339995)
hues6NP. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
.................................................GGTGGGCGGCGGGGCGGGGC.....................................................................................................................................................................................2034.000.006.00--3.00--3.00---2.001.002.002.00-1.002.002.00-1.001.00--1.00-1.00--------1.00-1.00---1.001.00--1.001.00-------------------
..................................................GTGGGCGGCGGGGCGGGGC.....................................................................................................................................................................................1912.000.00---1.00--1.003.00--1.00----1.00-----1.00----1.00--1.00---1.00-----1.00-------------------------
.....................................................................................................................................................TGAGTGCCTGGGCTCCCGCATC...............................................................................224.000.00----4.00------------------------------------------------------------
............................................................................................AGTCCAGGGGCAGACGGGATGGGTCTCCGCGC..............................................................................................................................322.000.00---------2.00-------------------------------------------------------
...................................................TGGGCGGCGGGGCGAGG......................................................................................................................................................................................172.000.00--------2.00--------------------------------------------------------
.................................................GGTGGGCGGCGGGGCGT........................................................................................................................................................................................171.000.00------------------1.00----------------------------------------------
....................................................GGGCGGCGGGGCGAGCC.....................................................................................................................................................................................171.000.00----------------------------1.00------------------------------------
..................................................GTGGGCGGCGGGGCGGA.......................................................................................................................................................................................171.000.00--------1.00--------------------------------------------------------
.............................................GGCAGGTGGGCGGCGGGT...........................................................................................................................................................................................181.000.00--------------1.00--------------------------------------------------
.........................................................................................................................................................................................................GGGGCCTGGCCAGAGTTGAT.............................201.000.00----------------------1.00------------------------------------------
...........TTTCTGGCGGCGCGCGCGAGT..........................................................................................................................................................................................................................211.000.00-------------------------------------------1.00---------------------
...............................................................................................................................................................................GTCCGCGCGACCCGGCTGC........................................................191.000.00-----------------------------------1.00-----------------------------
...................GGCGCGCGCGCTGCGCTGACT..................................................................................................................................................................................................................211.000.00--------------------------------1.00--------------------------------
.................................................GGTGGGCGGCGGGGCGGGGG.....................................................................................................................................................................................201.000.00---------------------------1.00-------------------------------------
.......................CGCGCGCTGCGCTCCGGC.................................................................................................................................................................................................................181.000.00------------------------------------------------1.00----------------
..........................................................................................GGAGTCCAGGGGCAGACGGGATGGGTCCCCG.................................................................................................................................311.000.00--------------------------------------1.00--------------------------
...........TTTCTGGCGGCGCGCGC..............................................................................................................................................................................................................................1711.001.00----------------------------------------------1.00------------------
..................................................GTGGGCGGCGGGGCGAGCGTA...................................................................................................................................................................................211.000.00-------------------------------1.00---------------------------------
..................................................................................................................................................ACGTGAGTGCCTGGGCT.......................................................................................1740.250.25---------------------------------------------------0.25-------------
................................................................................................CAGGGGCAGACGGGATGGGTCTCC..................................................................................................................................2490.220.22--------------------------------------------------0.11------------0.11-
...........................................CTGGCAGGTGGGCGGCGGGGCGAGCGGAGA.................................................................................................................................................................................3090.220.22-----------0.11-------------------------------------0.11---------------
................................................AGGTGGGCGGCGGGGCGAGCGGAGAGG...............................................................................................................................................................................2790.220.22--------------------------------------------------0.22--------------
...............................................................................................CCAGGGGCAGACGGGATGGGTCTCC..................................................................................................................................2590.220.22--------------------------------------------------------0.11---0.11----
..............................................................................................TCCAGGGGCAGACGGGATGGGTCTCC..................................................................................................................................2690.220.22-------------------------------------------------0.11--------------0.11
.....................................................................................................GCAGACGGGATGGGTCTCCG.................................................................................................................................2080.120.12----------------------------------------------------0.12------------
.........................................................................................................................................................................................................................................GCCCCGCGGGCTGGC..1580.120.12------------------0.12----------------------------------------------
...............................................................................................CCAGGGGCAGACGGGATGGGTCTCCGTGC..............................................................................................................................2980.120.12-------------------------------------------------0.12---------------
..........................................CCTGGCAGGTGGGCGGCGGGGCGAGCGGAGA.................................................................................................................................................................................3190.110.11-------------------------------------------------0.11---------------
......................................TTCCCCTGGCAGGTGGGC..................................................................................................................................................................................................1890.110.11-----------------------------------------------------------0.11-----
...............................................CAGGTGGGCGGCGGGGCGAGCGG....................................................................................................................................................................................2390.110.11---------------------------------------------------------0.11-------
.............................................GGCAGGTGGGCGGCGGGGCGAG.......................................................................................................................................................................................2290.110.11----------------------------------------------------------0.11------
.........................................CCCTGGCAGGTGGGCGGCG..............................................................................................................................................................................................1990.110.11-------------------0.11---------------------------------------------
................................................AGGTGGGCGGCGGGGCGAG.......................................................................................................................................................................................1990.110.11--------------------------------------------------------------0.11--
.....................................................................................................GCAGACGGGATGGGTCTCC..................................................................................................................................1990.110.11-------0.11---------------------------------------------------------
..........................................CCTGGCAGGTGGGCGGCGGGGCGAGCGGAGAGGC..............................................................................................................................................................................3490.110.11--------------------------------------------------0.11--------------
....................................CCTTCCCCTGGCAGGTGGGCG.................................................................................................................................................................................................2190.110.11-------------------------------------------------------------0.11---

Antisense strand
TGCAGCGCCGCTTTCTGGCGGCGCGCGCGCTGCGCTCCTTCCCCTGGCAGGTGGGCGGCGGGGCGAGCGGAGAGGCCCGCAGGGCTCGCGGGAGTCCAGGGGCAGACGGGATGGGTCTCCGTGCAGAAGCCCCCGACACGCCCGCCACGTGAGTGCCTGGGCTCCCGCCAGTCAGGTCCGCGCGACCCGGTCCCCATCCCTGGGGCCTGGCCAGAGTCGCTCACACCCTTCCTGCCCCGCGGGCTGGCGG
............................................((((.((((((....(((((..(((((((.((((...((((((....))))))..))))............)))))))......)))))......(((((.(((....)))..))))).)))))).))))............................................................................
............................................45................................................................................................................................175.........................................................................
SizePerfect hitTotal NormPerfect NormSRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577588(Rovira)
total RNA. (breast)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040028(GSM532913)
G026N. (cervix)
GSM532880(GSM532880)
G659T. (cervix)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029128(GSM416757)
H520. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
TAX577744(Rovira)
total RNA. (breast)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
TAX577745(Rovira)
total RNA. (breast)
DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)
TAX577743(Rovira)
total RNA. (breast)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
GSM339995(GSM339995)
hues6NP. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
.................................................................................................................................................................................................................GTGTGAGCGACTCTGGC........................ 1713.003.00-3.00---------------------------------------------------------------
..............................................................................................................................AAGCCCCCGACACGCTT........................................................................................................... 173.000.00-----3.00-----------------------------------------------------------
....................................................................................CTCGCGGGAGTCCAGGGGCAGAT............................................................................................................................................... 232.000.00------------------------1.00-----------------1.00----------------------
......................................................................................................................................................................CGCGCGGACCTGACTGGC.................................................................. 1812.002.00-2.00---------------------------------------------------------------
...............................................................................................................................AGCCCCCGACACGCCGCT......................................................................................................... 181.000.00--1.00--------------------------------------------------------------
...............................................................................................................................AGCCCCCGACACGCCGTT......................................................................................................... 181.000.00--1.00--------------------------------------------------------------
...............................................................................................................................AGCCCCCGACACGCCCTG......................................................................................................... 181.000.00--1.00--------------------------------------------------------------
....................................................................................................................................................................................CGCGACCCGGTCCCCGT..................................................... 171.000.00--------------1.00--------------------------------------------------
...............................................................................................................................AGCCCCCGACACGCCGCC......................................................................................................... 181.000.00--1.00--------------------------------------------------------------
........................................................................................................................................AGGCACTCACGTGGCGGGCGTG............................................................................................ 2211.001.00-------------------------------------1.00---------------------------
...............................................................................................................................AGCCCCCGACACGCCGAT......................................................................................................... 181.000.00--1.00--------------------------------------------------------------
.................................................GGTGGGCGGCGGGGCGGGC...................................................................................................................................................................................... 191.000.00------------------------------1.00----------------------------------
............................................................CCTGCGGGCCTCTCCGCTCGCCC....................................................................................................................................................................... 2311.001.00-----------1.00-----------------------------------------------------
...................................................................................................................................................TCGCGCGGACCTGACTGGCGGGAGCCCAGGCACTCACG................................................................. 3811.001.00-----------------------------------------------1.00-----------------
..................................................................................................................................................................TCCCGCCAGTCAGGTTG....................................................................... 171.000.00---------1.00-------------------------------------------------------
...................................................................................................................................................................CCCGCCAGTCAGGTCCGCGGC.................................................................. 211.000.00-----1.00-----------------------------------------------------------
...................................................................................TCTGCCCCTGGACTCCCGCGAGC................................................................................................................................................ 2380.250.25-----------------------------------------------------0.12-0.12---------
...................................................................................CTGCCCCTGGACTCCCGCGAGC................................................................................................................................................. 2280.120.12------------------------------------------------------0.12----------