ID: uc003ehg.2_intron_58_0_chr3_124436233_f.3p
GENE: (59)
chr3:124437572-124437821+


(3)
B-CELL 		(6)
BRAIN 		(8)
BREAST 		(12)
CELL-LINE 		(1)
FIBROBLAST 		(3)
LIVER 		(3)
OTHER 		(1)
RRP40.ip 		(3)
SKIN

Sense strand
CAAACTCAAAGTGTAGTAAGCTCAAAATGATAGTTTGAAGTATCCTATGCAGTTTCCGTAGTGCATAGGGAATTTTCTGTACACCATAGGCTTTATCAAAGAATAGCATAACTGTGTTTGAATTAATGAGGTATTTTGAGTAGTCAAAATAGAGGCCTAAACTTCCCTTCTTTTCTCCCTGCTTCCTTGGATCTCTGCAGCCTGAAAACCTGCTCATTGACCTACGGATTCCAGTGCCTCGAGTGAAGCT
............................................................(((.((((((....)))))).)))..((((((((.(((((..((((.....)))).)))))..........((((((((....))))))))))))))))...........................................................................................
..................................................51...........................................................................................................160........................................................................................
SizePerfect hitTotal NormPerfect NormTAX577739(Rovira)
total RNA. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR189784TAX577580(Rovira)
total RNA. (breast)		TAX577740(Rovira)
total RNA. (breast)		TAX577579(Rovira)
total RNA. (breast)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037935(GSM510473)
293cand3. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR189787SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189785SRR038859(GSM458542)
MM386. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR038857(GSM458540)
D20. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR029131(GSM416760)
MCF7. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR038856(GSM458539)
D11. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577745(Rovira)
total RNA. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
...................................................GTTTCCGTAGTGCATTGG.....................................................................................................................................................................................1815.000.002.00----1.001.001.003.00------1.00-1.00-----1.00---1.00---1.001.00----1.00-
...................................................GTTTCCGTAGTGCATTGGT....................................................................................................................................................................................1910.000.00-4.00-----1.00-1.001.00-----1.00--1.00---------1.00---------
...................................................GTTTCCGTAGTGCATCGG.....................................................................................................................................................................................187.000.001.00-1.00-2.001.00-----1.00----------------------1.00----
...................................................GTTTCCGTAGTGCATGGG.....................................................................................................................................................................................184.000.001.00-----1.00-----------------------1.00-----1.00--
...................................................GTTTCCGTAGTGCATTGT.....................................................................................................................................................................................183.000.001.00---1.00-1.00--------------------------------
...................................................GTTTCCGTAGTGCATCGGT....................................................................................................................................................................................192.000.00-1.00------------------------------------1.00
..................................................AGTTTCCGTAGTGCAGTGG.....................................................................................................................................................................................192.000.001.00---------------------------1.00----------
...................................................GTTTCCGTAGTGCATGTG.....................................................................................................................................................................................182.000.00--1.00----------------------1.00-------------
...................................................GTTTCCGTAGTGCATTCG.....................................................................................................................................................................................182.000.00-----1.00--------1.00------------------------
...................................................GTTTCCGTAGTGCATTGGA....................................................................................................................................................................................191.000.00--1.00------------------------------------
...................................................GTTTCCGTAGTGCATACA.....................................................................................................................................................................................181.000.00----------------------1.00----------------
...................................................GTTTCCGTAGTGCATCTG.....................................................................................................................................................................................181.000.00--------------------------1.00------------
...................................................GTTTCCGTAGTGCATAGG.....................................................................................................................................................................................1811.001.00---------1.00-----------------------------
...................................................GTTTCCGTAGTGCATTGGG....................................................................................................................................................................................191.000.00-1.00-------------------------------------
...................................................GTTTCCGTAGTGCATC.......................................................................................................................................................................................161.000.00---------------------1.00-----------------
...................................................GTTTCCGTAGTGCATGGGT....................................................................................................................................................................................191.000.00-1.00-------------------------------------
...................................................GTTTCCGTAGTGCATTA......................................................................................................................................................................................171.000.00-------------1.00-------------------------
...................................................GTTTCCGTAGTGCATTTC.....................................................................................................................................................................................181.000.00-----------------------------------1.00---
...................................................GTTTCCGTAGTGCATTCGT....................................................................................................................................................................................191.000.001.00--------------------------------------
..........................................................................................................................................AGTAGTCAAAATAGATCCG.............................................................................................191.000.00------------------------1.00--------------
...................................................GTTTCCGTAGTGCATAGATT...................................................................................................................................................................................201.000.00-------1.00-------------------------------
.....................................................................................................................................................................................CTTCCTTGGATCTCTGAGCG.................................................201.000.00------------1.00--------------------------
...................................................GTTTCCGTAGTGCATAGGTTA..................................................................................................................................................................................2111.001.00---------------------------------1.00-----

Antisense strand
CAAACTCAAAGTGTAGTAAGCTCAAAATGATAGTTTGAAGTATCCTATGCAGTTTCCGTAGTGCATAGGGAATTTTCTGTACACCATAGGCTTTATCAAAGAATAGCATAACTGTGTTTGAATTAATGAGGTATTTTGAGTAGTCAAAATAGAGGCCTAAACTTCCCTTCTTTTCTCCCTGCTTCCTTGGATCTCTGCAGCCTGAAAACCTGCTCATTGACCTACGGATTCCAGTGCCTCGAGTGAAGCT
............................................................(((.((((((....)))))).)))..((((((((.(((((..((((.....)))).)))))..........((((((((....))))))))))))))))...........................................................................................
..................................................51...........................................................................................................160........................................................................................
SizePerfect hitTotal NormPerfect NormTAX577739(Rovira)
total RNA. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR189784TAX577580(Rovira)
total RNA. (breast)		TAX577740(Rovira)
total RNA. (breast)		TAX577579(Rovira)
total RNA. (breast)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037935(GSM510473)
293cand3. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR189787SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189785SRR038859(GSM458542)
MM386. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR038857(GSM458540)
D20. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR029131(GSM416760)
MCF7. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR038856(GSM458539)
D11. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577745(Rovira)
total RNA. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
.............................................................................................................................ATGAGGTATTTTGAGTAGTG......................................................................................................... 203.000.00---3.00-----------------------------------
.............................................................................................................................................................................TCTCCCTGCTTCCTTGGAGTC........................................................ 211.000.00--1.00------------------------------------
...................................................................................................................................................................TCCCTTCTTTTCTCCCTGCTGAG................................................................ 231.000.00--------------------1.00------------------
............................................................................................................................................................................TTCTCCCTGCTTCCTTGGCT.......................................................... 201.000.00----------1.00----------------------------
.............................................................................................................................................................................TCTCCCTGCTTCCTTGGGTT......................................................... 201.000.00------------------1.00--------------------