ID: uc003efz.1_intron_18_0_chr3_122658318_r.5p
GENE: SEMA5B(4)
chr3:122662083-122662332-


(4)
AGO2.ip
(4)
B-CELL
(5)
BRAIN
(9)
BREAST
(8)
CELL-LINE
(4)
CERVIX
(2)
HEART
(1)
KIDNEY
(6)
LIVER
(2)
OTHER
(34)
SKIN
(2)
UTERUS

Sense strand
TCCCAGCTGGCTTTGGACCCCTCCGGGAACCAGCTCATCGTGGGAGCCAGGTAACAAGGGGCAGAAGGGTCGGGGTGGGAAGTGCAGGGGCTTGGAGCTGGGTAGAGGGAATATTATTCAGGATGAACTCACCTGGGCAGCCCCGCGTGCTGGGCCCCATCCTCTCTGCTGGGCCCTCTCCTTGTGGATGTCTGTCCCCCCACAGGAGGAAGCGTGTTTCGGCTGGGTGGGGGTGGGGGTGACTCTTGAC
..................................................................(((((...((.......))...)))))....((((((((........)))))))).................................................................................................................................
..........................................................59..................................................................127.........................................................................................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR040008(GSM532893)
G727N. (cervix)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR189782TAX577740(Rovira)
total RNA. (breast)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040039(GSM532924)
G531T. (cervix)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577744(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
SRR191431(GSM715541)
168genomic small RNA (size selected RNA from . (breast)
TAX577738(Rovira)
total RNA. (breast)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
TAX577745(Rovira)
total RNA. (breast)
TAX577743(Rovira)
total RNA. (breast)
SRR040015(GSM532900)
G623T. (cervix)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040009(GSM532894)
G727T. (cervix)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
...............................................................GAAGGGTCGGGGTGGCAGG........................................................................................................................................................................199.000.004.001.00-----1.00--1.00--1.00--------------1.00-------------------------------------------------
...............................................................GAAGGGTCGGGGTGGCA..........................................................................................................................................................................177.000.002.00-1.00---1.00-----1.00----1.00--1.00---------------------------------------------------------
...............................................................GAAGGGTCGGGGTGGCAG.........................................................................................................................................................................184.000.002.001.00------1.00---------------------------------------------------------------------
..............................................................AGAAGGGTCGGGGTGGCA..........................................................................................................................................................................1872.862.140.14------0.140.14--0.140.140.14-----------------------------0.14----0.29------0.140.140.14----0.14-0.14--0.140.14--0.140.14--0.140.14-
..............................................................AGAAGGGTCGGGGTGG............................................................................................................................................................................1672.142.14--0.14-------0.14----------------------------0.57--0.290.290.14---------------0.140.14---0.14----0.14-------
.........................................................GGGGCAGAAGGGTCGG.................................................................................................................................................................................1612.002.00-2.00----------------------------------------------------------------------------
.........................................................GGGGCAGAAGGGTCGGGGCGGA...........................................................................................................................................................................2212.002.00---------------1.00---------1.00----------------------------------------------------
.........................................................GGGGCAGAAGGGTCGGGG...............................................................................................................................................................................1812.002.00---1.00----------------------1.00---------------------------------------------------
............................................................GCAGAAGGGTCGGGGCGGC...........................................................................................................................................................................1941.000.50-------------------------------------------------0.250.250.250.25-------------------------
...............................................................GAAGGGTCGGGGTGGCAA.........................................................................................................................................................................181.000.00--------------1.00---------------------------------------------------------------
...............................................................GAAGGGTCGGGGTGGCT..........................................................................................................................................................................171.000.00---------1.00--------------------------------------------------------------------
...........................................................GGCAGAAGGGTCGGGTCGG............................................................................................................................................................................191.000.00------------------1.00-----------------------------------------------------------
......................................................................................................TAGAGGGAATATTATTCCAGT...............................................................................................................................211.000.00---------------------1.00--------------------------------------------------------
..................................................................................TGCAGGGGCTTGGAGCTGGGTAGAGGGA............................................................................................................................................2811.001.00-1.00----------------------------------------------------------------------------
..........................................................GGGCAGAAGGGTCGGGG...............................................................................................................................................................................1711.001.00------------------------------1.00-----------------------------------------------
.............................................................CAGAAGGGTCGGGGTGGC...........................................................................................................................................................................181.000.00-----------------------------------1.00------------------------------------------
.........................................................GGGGCAGAAGGGTCGGGGCGGC...........................................................................................................................................................................2211.002.00--1.00---------------------------------------------------------------------------
..........................................................GGGCAGAAGGGTCGG.................................................................................................................................................................................1511.001.00---1.00--------------------------------------------------------------------------
..........................................................................................................................................................................................................................TCGGCTGGGTGGGGGGT...............171.000.00-----------1.00------------------------------------------------------------------
..............................CAGCTCATCGTGGGAGCCAGGAACT...................................................................................................................................................................................................251.000.00-------------------------------1.00----------------------------------------------
.........................................................GGGGCAGAAGGGTCGGGGCGG............................................................................................................................................................................2111.002.00----------------------------------1.00-------------------------------------------
..........................................................GGGCAGAAGGGTCGGGGC..............................................................................................................................................................................1811.001.00-----1.00------------------------------------------------------------------------
............................................................................................TGGAGCTGGGTAGAGCGT............................................................................................................................................181.000.00--------------------------------------1.00---------------------------------------
...........................................................................................................................................................................................................................CGGCTGGGTGGGGGTGGGGGTGACTCTTG..2911.001.00---------------------------------1.00--------------------------------------------
............................................................GCAGAAGGGTCGGGGCGG............................................................................................................................................................................1841.000.500.75-----------------------------------------------------0.25-----------------------
.........................................................GGGGCAGAAGGGTCGGGGCG.............................................................................................................................................................................2011.002.00-----------------------1.00------------------------------------------------------
........................................................AGGGGCAGAAGGGTCAAGC...............................................................................................................................................................................191.000.00----------------1.00-------------------------------------------------------------
..............................................................AGAAGGGTCGGGGTGGCAG.........................................................................................................................................................................1970.862.14-------0.14--------------------------------------0.14-----------0.140.14-------------0.140.14---
..............................................................AGAAGGGTCGGGGTGGCAGG........................................................................................................................................................................2070.862.140.57----------------------------------------------0.14------------------0.14-----------
..............................................................AGAAGGGTCGGGGTG.............................................................................................................................................................................1570.860.86------------------------------------------0.14-0.290.14-----------------0.14-----0.14--------
...............................................................GAAGGGTCGGGGTGGGA..........................................................................................................................................................................1720.500.50-----------------------------------------0.50------------------------------------
...........................................................GGCAGAAGGGTCGGGGCGGC...........................................................................................................................................................................2020.500.50-----0.50------------------------------------------------------------------------
...........................................................GGCAGAAGGGTCGGGG...............................................................................................................................................................................1620.500.50----------------------------------------0.50-------------------------------------
............................................................GCAGAAGGGTCGGGG...............................................................................................................................................................................1540.500.50-0.25---------------------------------------------------0.25------------------------
..............................................................AGAAGGGTCGGGGTGGCAGT........................................................................................................................................................................2070.292.14------0.14----------------------------------------------------------------------0.14
..............................................................AGAAGGGTCGGGGTGGTA..........................................................................................................................................................................1870.292.14------0.14--------------------------------------0.14--------------------------------
............................................................GCAGAAGGGTCGGGGCG.............................................................................................................................................................................1740.250.500.25-----------------------------------------------------------------------------
..............................................................AGAAGGGTCGGGGTGCAGG.........................................................................................................................................................................1970.140.86-----------------------------------------------0.14------------------------------
..............................................................AGAAGGGTCGGGGTGGCT..........................................................................................................................................................................1870.142.14---------0.14--------------------------------------------------------------------
..............................................................AGAAGGGTCGGGGTGGTAG.........................................................................................................................................................................1970.142.14----------------------------------------------0.14-------------------------------

Antisense strand
TCCCAGCTGGCTTTGGACCCCTCCGGGAACCAGCTCATCGTGGGAGCCAGGTAACAAGGGGCAGAAGGGTCGGGGTGGGAAGTGCAGGGGCTTGGAGCTGGGTAGAGGGAATATTATTCAGGATGAACTCACCTGGGCAGCCCCGCGTGCTGGGCCCCATCCTCTCTGCTGGGCCCTCTCCTTGTGGATGTCTGTCCCCCCACAGGAGGAAGCGTGTTTCGGCTGGGTGGGGGTGGGGGTGACTCTTGAC
..................................................................(((((...((.......))...)))))....((((((((........)))))))).................................................................................................................................
..........................................................59..................................................................127.........................................................................................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR040008(GSM532893)
G727N. (cervix)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR189782TAX577740(Rovira)
total RNA. (breast)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040039(GSM532924)
G531T. (cervix)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577744(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
SRR191431(GSM715541)
168genomic small RNA (size selected RNA from . (breast)
TAX577738(Rovira)
total RNA. (breast)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
TAX577745(Rovira)
total RNA. (breast)
TAX577743(Rovira)
total RNA. (breast)
SRR040015(GSM532900)
G623T. (cervix)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040009(GSM532894)
G727T. (cervix)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
.....................................................................................................................................................................................................................GTGTTTCGGCTGGGTCA.................... 174.000.00-------------------1.00---------1.00--1.00---1.00-----------------------------------------
........................................................................................................................................................................CTGGGCCCTCTCCTTACGT............................................................... 191.000.00----1.00-------------------------------------------------------------------------
.....................................................................................................................................................................................................................GTGTTTCGGCTGGGTCC.................... 171.000.00-------------------------------------1.00----------------------------------------
.................................................................................................................................................................................................................................GGTGGGGGTGGGGGTGAGT...... 191.000.00---------------------------1.00--------------------------------------------------
........................................................................................................................................................................CTGGGCCCTCTCCTTAAGG............................................................... 191.000.00----1.00-------------------------------------------------------------------------
.....................................................................................................................................................CTGGGCCCCATCCTCTGG................................................................................... 181.000.00----------------------1.00-------------------------------------------------------
........................................................................................................................................................................CTGGGCCCTCTCCTTGAA................................................................ 181.000.00------------------------1.00-----------------------------------------------------