ID: uc003eeg.2_intron_0_0_chr3_121312350_f.5p
GENE: FBXO40(1)
chr3:121312300-121312549+


(1)
AGO1.ip 		(1)
B-CELL 		(2)
BRAIN 		(3)
BREAST 		(12)
CELL-LINE 		(3)
CERVIX 		(5)
HEART 		(1)
LIVER 		(4)
OTHER 		(4)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
AATCAAGGGTTCAGGTGCAAGCAGATGCTGACTCAGCCTGTTCCATTAAGGTAAGTATTCAAACAGGAGCAGGTGCACCATGACGAGGACATTCAGTGGTGAATATGCAGATGAAGCTGAGCCGCATATCACTTTTGTGTCCTGTGGAAGAGGATTGTTAAGCAAATTAGTTATGTAAAGATGTGGGGGAAAGGCTGGCACTGAGAATGAGATCCAGCCGTGTGTAAATTTCTGTTTCCATTTCAAGAGC
..........................................................................................................................................(((((.......))))).(((.(((...((..((((((....))))))..))...))))))...................................................
.........................................................................................................................................138...........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR189782SRR343335SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR040032(GSM532917)
G603N. (cervix)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR444066(SRX128914)
Sample 23cDNABarcode: AF-PP-339: ACG CTC TTC . (cell line)		SRR343334SRR040034(GSM532919)
G001N. (cervix)		SRR037936(GSM510474)
293cand1. (cell line)		SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040037(GSM532922)
G243T. (cervix)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR444065(SRX128913)
Sample 22cDNABarcode: AF-PP-335: ACG CTC TTC . (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189783SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
......................................................................................................................................................................................GTGGGGGAAAGGCTGTA...................................................17011.001.004.001.00---2.00--1.00---1.00------------1.00------1.00---
......................................................................................................................................................................................GTGGGGGAAAGGCTGTCGC.................................................1906.001.00-2.00----2.00-------1.00----------------1.00----
......................................................................................................................................................................................GTGGGGGAAAGGCTGTAA..................................................1806.001.001.00---------1.001.00---1.00-----1.00----1.00---------
......................................................................................................................................................................................GTGGGGGAAAGGCTGTCG..................................................1806.001.003.00-------1.00--------------1.001.00-----------
......................................................................................................................................................................................GTGGGGGAAAGGCTGTAAA.................................................1903.001.001.00------------1.00---------------1.00------
..............................................................................................................................................TGTGGAAGAGGATTGTAAAA........................................................................................202.000.00---2.00--------------------------------
......................................................................................................................................................................................GTGGGGGAAAGGCTGATG..................................................1802.001.002.00-----------------------------------
......................................................................................................................................................................................GTGGGGGAAAGGCTGGCGCT................................................201.000.00------------------1.00-----------------
..............................................................................................................................................TGTGGAAGAGGATTGTGTTG........................................................................................201.000.00--------------------1.00---------------
..............................................................................................................................................TGTGGAAGAGGATTGGAT..........................................................................................181.000.00------------------------------1.00-----
..............................................................................................................................................................................................AAGGCTGGCACTGAGAACGTT.......................................211.000.00----------------------------1.00-------
..........................................................................................................................................................................................................GAGAATGAGATCCAGCCGTGTGTA........................2411.001.00----------------------1.00-------------
.....AGGGTTCAGGTGCAAGCAGATG...............................................................................................................................................................................................................................2211.001.00-------1.00----------------------------
.ATCAAGGGTTCAGGTGCAAGCAGAT................................................................................................................................................................................................................................2511.001.00--1.00---------------------------------
......................................................................................................................................................................................GTGGGGGAAAGGCTGAATA.................................................1901.001.001.00-----------------------------------
..................................................GTAAGTATTCAAACAGGAGCAGGA................................................................................................................................................................................241.000.00-------1.00----------------------------
......................................................................................................................................................................................GTGGGGGAAAGGCTG.....................................................1501.001.00-------------------1.00----------------
..............................................................................................................................................TGTGGAAGAGGATTGGGT..........................................................................................181.000.00----------------1.00-------------------
..............................................................................CATGACGAGGACATTCAGTGG.......................................................................................................................................................2111.001.00--1.00---------------------------------
......................................................................................................................................................................................GTGGGGGAAAGGCTGAGA..................................................1801.001.001.00-----------------------------------
................................................................................TGACGAGGACATTCAGTGGTGAATATGC..............................................................................................................................................2811.001.00---------------------------------1.00--
......................................................................................................................................................................................GTGGGGGAAAGGCTGTTTA.................................................1901.001.001.00-----------------------------------
..............................................................................................................................................TGTGGAAGAGGATTGTATAG........................................................................................201.000.00---1.00--------------------------------
......................................................................................................................................................................................GTGGGGGAAAGGCTGTTA..................................................1801.001.00-----------------1.00------------------
......................................................................................................................................................................................GTGGGGGAAAGGCTGTAG..................................................1801.001.001.00-----------------------------------
......GGGTTCAGGTGCAAGCAGATGCTG............................................................................................................................................................................................................................2411.001.00--1.00---------------------------------
.............................................................................................................................................................................................AAAGGCTGGCACTGAGAA...........................................1830.670.67----------------------------------0.67-
........................................................................................................................................................................................................CTGAGAATGAGATCC...................................1580.120.12-----------------------------------0.12

Antisense strand
AATCAAGGGTTCAGGTGCAAGCAGATGCTGACTCAGCCTGTTCCATTAAGGTAAGTATTCAAACAGGAGCAGGTGCACCATGACGAGGACATTCAGTGGTGAATATGCAGATGAAGCTGAGCCGCATATCACTTTTGTGTCCTGTGGAAGAGGATTGTTAAGCAAATTAGTTATGTAAAGATGTGGGGGAAAGGCTGGCACTGAGAATGAGATCCAGCCGTGTGTAAATTTCTGTTTCCATTTCAAGAGC
..........................................................................................................................................(((((.......))))).(((.(((...((..((((((....))))))..))...))))))...................................................
.........................................................................................................................................138...........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR189782SRR343335SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR040032(GSM532917)
G603N. (cervix)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR444066(SRX128914)
Sample 23cDNABarcode: AF-PP-339: ACG CTC TTC . (cell line)		SRR343334SRR040034(GSM532919)
G001N. (cervix)		SRR037936(GSM510474)
293cand1. (cell line)		SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040037(GSM532922)
G243T. (cervix)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR444065(SRX128913)
Sample 22cDNABarcode: AF-PP-335: ACG CTC TTC . (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189783SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
...........................................................................................TTCAGTGGTGAATATGG.............................................................................................................................................. 174.000.00----3.00----1.00--------------------------
..............................................................................................................................................................................GTAAAGATGTGGGGGACA.......................................................... 181.000.00---------------------------1.00--------