ID: uc003eee.3_intron_19_0_chr3_121229091_r.5p
GENE: (10)
chr3:121230534-121230783-


(3)
AGO2.ip
(2)
B-CELL
(1)
BREAST
(19)
CELL-LINE
(1)
CERVIX
(1)
HEART
(1)
HELA
(1)
OTHER
(8)
SKIN
(1)
XRN.ip

Sense strand
GACGAGAAGGAGAAGAAGTAACTGGCAGCATGATACGAGCTATTCTGGAGGTAAGAGAGAATTTACTAAATTACCATTTGCTCTTTTATGCCTAAATTAGTAAAATGTTAGTATATGAAAATCTTAGCTTTATTTATTTATTTTTTTTAATTTATTTTTGAGACAGAGTCTCACTCTGTTACCCAGGCCGGAGTACAATGGCATGATCTCAGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCAATTCT
..........................................................................................................................(((.((((................((((.......))))(((((((.....)))))))....))))..))).........................................................
..........................................................................................................................123....................................................................194......................................................
SizePerfect hitTotal NormPerfect NormSRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR040028(GSM532913)
G026N. (cervix)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
GSM956925PAZD5SRR189782SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
TAX577739(Rovira)
total RNA. (breast)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
...............................................................................................................................CTTTATTTATTTATTTTTTTTAATTTATTTTTG..........................................................................................33149.0049.0024.00-12.007.00-6.00------------------------------
...............................................................................................................................CTTTATTTATTTATTTTTTTTAATTTATTCTTG..........................................................................................334.000.003.00-1.00---------------------------------
...............................................................................................................................CTTTATTTATTTATTTCTTG.......................................................................................................203.000.001.00-2.00---------------------------------
...............................................................................................................................CTTTATTTATTTATTTTTTTTAATTTATTTTCG..........................................................................................333.000.001.00-2.00---------------------------------
....................................................................................................................................................................................................................CTCACTGCAACCTCCGCCTCCCGGCCC...........273.000.00-3.00----------------------------------
..................................................................................................................................................................................................................AGCTCACTGCAACCTCCGCCTCCCGGGTTGCAG.......333.000.00-3.00----------------------------------
...............................................................................................................................CTTTATTTATTTATTTTTTTTAATTTATTTCTG..........................................................................................333.000.00--2.00--1.00------------------------------
..................................................................................................................................................................................................................AGCTCACTGCAACCTCCGCCTCCCGGGTCT..........302.000.00----2.00-------------------------------
...............................................................................................................................CTTTATTTATTTATTTTTTTTACACG.................................................................................................262.000.00---1.00-1.00------------------------------
...............................................................................................................................CTTTATTTATTTATTTTTTTTAATTTATTTTG...........................................................................................322.000.002.00-----------------------------------
.......................................................................................................................................................................................................................ACTGCAACCTCCGCCTCCCGGGTCG..........252.000.00-2.00----------------------------------
...................................................................................................................................ATTTATTTATTTTTTTTAATTTATTTTCGAG........................................................................................311.000.00-1.00----------------------------------
...................................................................................................................................ATTTATTTATTTTTTTTAATTCATT..............................................................................................251.000.00-1.00----------------------------------
.......................................................................................................................................................................GTCTCACTCTGTTACCCAGGGAG............................................................231.000.00-1.00----------------------------------
..................................................................................................................................................................................................................AGCTCACTGCAACCTCCGCCTCCCGCGC............281.000.00----1.00-------------------------------
...................................................................................................................................ATTTATTTATTTTTTTTAATTTATTTTCG..........................................................................................291.000.001.00-----------------------------------
..................................................................................................................................................................................................................AGCTCACTGCAACCTCCGCCTCCCGGCTCC..........301.000.00-1.00----------------------------------
..........................................................................................................................................................................TCACTCTGTTACCCAGGCCGGAGCAGT.....................................................271.000.00-1.00----------------------------------
...............AAGTAACTGGCAGCATGATACG.....................................................................................................................................................................................................................2211.001.00---------------------------1.00--------
.......................................................................................................................................................................................................................ACTGCAACCTCCGCCTCCCGGCCC...........241.000.00-1.00----------------------------------
.......AGGAGAAGAAGTAACTGGCAGC.............................................................................................................................................................................................................................2211.001.00----------------------1.00-------------
.............................................................................................................................AGCTTTATTTATTTATTTTTTTTAATTTATTT.............................................................................................3211.001.00-1.00----------------------------------
...............................................................................................................................................TTTTTAATTTATTTTTCTAG.......................................................................................201.000.00---1.00--------------------------------
...............................................................................................................................CTTTATTTATTTATTTTTTTTATTG..................................................................................................251.000.00-----1.00------------------------------
...............................................................................................................................CTTTATTTATTTATTTTTTTTAATTTATCTTT...........................................................................................321.000.001.00-----------------------------------
......AAGGAGAAGAAGTAAGTTG.................................................................................................................................................................................................................................191.000.00-------------------------1.00----------
................................ATACGAGCTATTCTGGAG........................................................................................................................................................................................................1811.001.00--------1.00---------------------------
.............................................................................................................................AGCTTTATTTATTTATTTTTTTTAATTT.................................................................................................2811.001.00-1.00----------------------------------
..........................................................................................................................................................................TCACTCTGTTACCCAGGCCGGAGCGC......................................................261.000.00-1.00----------------------------------
.......................................................................................................................................................................................................................ACTGCAACCTCCGCCTCCCGGGTCGG.........261.000.00-1.00----------------------------------
..................................................................................................................................................................................................................AGCTCACTGCAACCTCCGCCTCCCGGCCC...........291.000.00-1.00----------------------------------
.......................................................................................................................................................................................................................ACTGCAACCTCCGCCTCCCGGGACC..........251.000.00-1.00----------------------------------
..................................................................................................................................................................................................................AGCTCACTGCAACCTCCGCCTCCCGCGTC...........291.000.00----1.00-------------------------------
...............................................................................................................................CTTTATTTATTTATTTTTTTCTTG...................................................................................................241.000.001.00-----------------------------------
........................................................................................................................................TTTATTTTTTTTAATTTATTTTTC..........................................................................................241.000.001.00-----------------------------------
..................TAACTGGCAGCATGATACG.....................................................................................................................................................................................................................1911.001.00-------------------------------1.00----
................................................................................................................................................................................................................TCAGCTCACTGCAACCTCCGCCTCCCGGTAAG..........321.000.00-1.00----------------------------------
...............................................................................................................................CTTTATTTATTTATTTTTTTTAACT..................................................................................................251.000.00-----1.00------------------------------
......................................................................................................................................................TTTATTTTTGAGACAGAGTCGGGC............................................................................241.000.00-1.00----------------------------------
...................................................................................................................................ATTTATTTATTTTTTTTAAGTAA................................................................................................231.000.00---------------------1.00--------------
...................................................................................................................................ATTTATTTATTTTTTTTAACCTC................................................................................................231.000.00---------1.00--------------------------
....................................................................................................................................................................................ACCCAGGCCGGAGTACAATGGCATGACCTC........................................301.000.00-1.00----------------------------------
............................................................................................................................TAGCTTTATTTATTTATTTTTTTTAATTTATTT.............................................................................................3311.001.00-1.00----------------------------------
.............................................................................................................................AGCTTTATTTATTTATTTTTCG.......................................................................................................221.000.00---1.00--------------------------------
.......................................................................................................................................................................GTCTCACTCTGTTACGC..................................................................171.000.00---------------1.00--------------------
....................................................................................................................................TTTATTTATTTTTTTTAATTTCTTG.............................................................................................251.000.001.00-----------------------------------
.................................................................................................................................TTATTTATTTATTTTTTTTAATTATG...............................................................................................261.000.00---1.00--------------------------------
..................................................................................................................................................................................................................AGCTCACTGCAACCTCCGCCTCCCGGGTCG..........301.000.00-1.00----------------------------------
.........................................................................................................................................TTATTTTTTTTAATTTAAACT............................................................................................211.000.00----------------1.00-------------------
...................................................................................................................................ATTTATTTATTTTTTTTAATTTATTTTG...........................................................................................281.000.00--1.00---------------------------------
.............................................................................................................................AGCTTTATTTATTTATTTTTTTTTAAC..................................................................................................271.000.00----1.00-------------------------------
.......................................................................................................................................................................................................................ACTGCAACCTCCGCCTCCCGGGTCGA.........261.000.00----1.00-------------------------------
...GAGAAGGAGAAGAAG........................................................................................................................................................................................................................................1501.001.00-------1.00----------------------------
..................................................................................................................................................................................................................AGCTCACTGCAACCTCCGCCTCCCGGTTG...........291.000.00-1.00----------------------------------
.......AGGAGAAGAAGTAACTGGCAGCATGATACG.....................................................................................................................................................................................................................3011.001.00--------------1.00---------------------
.....................................................................ATTACCATTTGCTCTTTTTTT................................................................................................................................................................211.000.00---------1.00--------------------------
...............................................................................................................................................TTTTTAATTTATTTTTCTCC.......................................................................................201.000.00---------1.00--------------------------
...........................................................................................................................................................................................................................CAACCTCCGCCTCCCGGGTTCAAGCATCTC.301.000.00----1.00-------------------------------
..................................................................................................................................................................................................................AGCTCACTGCAACCTCCGCCTCCCGGTTCC..........301.000.00-1.00----------------------------------
......................................................................................................................................TATTTATTTTTTTTAATTTATTTTTG..........................................................................................2611.001.00---1.00--------------------------------
.......................................................................................................................................................................................................................ACTGCAACCTCCGCCTCCCGGC.............221.000.00-------1.00----------------------------
........................................................................................................................................................................................................................CTGCAACCTCCGCCTCCCGGGGTGA.........251.000.00-------------------1.00----------------
................................................................................................................................................................AGACAGAGTCTCACTCTGTTACCCAGGCCGG...........................................................3130.330.33-0.33----------------------------------

Antisense strand
GACGAGAAGGAGAAGAAGTAACTGGCAGCATGATACGAGCTATTCTGGAGGTAAGAGAGAATTTACTAAATTACCATTTGCTCTTTTATGCCTAAATTAGTAAAATGTTAGTATATGAAAATCTTAGCTTTATTTATTTATTTTTTTTAATTTATTTTTGAGACAGAGTCTCACTCTGTTACCCAGGCCGGAGTACAATGGCATGATCTCAGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCAATTCT
..........................................................................................................................(((.((((................((((.......))))(((((((.....)))))))....))))..))).........................................................
..........................................................................................................................123....................................................................194......................................................
SizePerfect hitTotal NormPerfect NormSRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR040028(GSM532913)
G026N. (cervix)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR343333(GSM796036)
KSHV (HHV8). (cell line)
GSM956925PAZD5SRR189782SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
TAX577739(Rovira)
total RNA. (breast)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
..................................................................................................................................................................................................................AGCTCACTGCAACCTCCGCCTCCCGCTG............ 2810.000.00------3.00----1.001.00----1.00------------1.00-1.001.001.00-
......................................................................................................................................................................................................................CACTGCAACCTCCGCCTCCCGGGTTT.......... 262.000.00-------------2.00----------------------
........................................................................................................................................................................................................................CTGCAACCTCCGCCTCCCGGGTTCAGAGG..... 291.000.00----1.00-------------------------------
.............................................................................................................................................TTTTTTTAATTTATTTTGTG......................................................................................... 201.000.00-----------------------1.00------------
..................................................................................................................................................................................................................AGCTCACTGCAACCTCCGCCTCCCGGGTCTG......... 311.000.00------1.00-----------------------------
.............................................................................................................................................................................................................................ACCTCCGCCTCCCGGGTTCAAGA...... 231.000.00------------------1.00-----------------
..............................................................................................................................................................................................................................CCTCCGCCTCCCGGGTTCAAGCA..... 231.000.00----------1.00-------------------------
.......................................................................................................................................................................................................................ACTGCAACCTCCGCCTCCCGGGCA........... 241.000.00--------1.00---------------------------
......................................................................................................................................................................................................................CACTGCAACCTCCGCCTCCCGGGTTCATAG...... 301.000.00------------1.00-----------------------
..............................................................................................................................................................................................................TCTCAGCTCACTGCAACCTCCGCGTG.................. 261.000.00-----------------------------1.00------
..............................................................................................................................................................................................................................CCTCCGCCTCCCGGGTTATGC....... 211.000.00-------1.00----------------------------
..............................................................................................................................................................................................................................CCTCCGCCTCCCGGGTTCAATCC..... 231.000.00----1.00-------------------------------
.....................................................................................................................................................................................................................TCACTGCAACCTCCGCCTCCCGGGTCC.......... 271.000.00--------1.00---------------------------
......................................................................................................................................................................................................................CACTGCAACCTCCGCCTCCCGGGTTCAATAG..... 311.000.00----------------------------1.00-------
....................................................................................................................................................................................................TTGCAGTGAGCTGAGATCATGCCATT............................ 2601.001.00--------------------------1.00---------
..................................................................................................................................................................................................................AGCTCACTGCAACCTCCGCCTCCCGGCTG........... 291.000.00-----------1.00------------------------
................................................................................................................................................TTTTAATTTATTTTTGATG....................................................................................... 191.000.00---1.00--------------------------------
.....................................................................................................................................TAAAAAAAATAAATAA..................................................................................................... 1601.001.00--------------------1.00---------------
.........................................................................................................................................................................................................CATGATCTCAGCTCACTGCAACCTCCGTA.................... 291.000.00------1.00-----------------------------
.................................................................................................................................................................................................................................CCGCCTCCCGGGTTCATG....... 181.000.00----------1.00-------------------------
........................................................................................................................................................................................................................CTGCAACCTCCGCCTCCCGGGTACGG........ 261.000.00-1.00----------------------------------
..............................................................................................................................................................................................................................CCTCCGCCTCCCGGGTTCAAGCAATTGCC 291.000.00----1.00-------------------------------
..................................................................................................................................................................................................................AGCTCACTGCAACCTCCGCCTCCCGGGTTTTT........ 321.000.00------------------------1.00-----------
..........................................................................................................................................................................................................................GCAACCTCCGCCTCCCGGGTTCAGG....... 251.000.00----1.00-------------------------------
...................................................................................................................................................................................TACTCCGGCCTGGGTA....................................................... 1680.120.12-----------------------------------0.12