ID: uc003ecn.2_intron_0_0_chr3_119217775_f.3p
GENE: (1)
chr3:119219342-119219591+


(1)
AGO2.ip 		(3)
B-CELL 		(1)
BRAIN 		(2)
BREAST 		(29)
CELL-LINE 		(1)
FIBROBLAST 		(5)
HEART 		(2)
HELA 		(1)
KIDNEY 		(4)
LIVER 		(2)
OTHER 		(2)
RRP40.ip 		(7)
SKIN 		(1)
TESTES

Sense strand
CTAATTCTAACACCATAGCTTCGTTTTGTCTGAGACTACGTTCCTTTTAATATAACTGAACTGTTTAATTCATCTGAGAATTCTACCTATGATGAAAAATGTTGTGGTGGTAGCATTTGGGTTAATTCTGATTATAGAGTCTCTTGGAGAGCAATGTCCATAAACTAATCCCAAACAACATTGTCTTTTTGATGTTGTAGTGAACAGCAGAGAATTTCAAAGGACCTTGCTAATATCTGTAAGACGGCAG
....................................................................................................................(((((...((((((....))))))....((((........)))).........)))))(((((((((......)))))))))....................................................
.................................................................................................................114.........................................................................................206..........................................
SizePerfect hitTotal NormPerfect NormSRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR553576(SRX182782)
source: Testis. (testes)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		GSM339995(GSM339995)
hues6NP. (cell line)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR189782SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR038862(GSM458545)
MM472. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR029131(GSM416760)
MCF7. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
.....................................................................TCATCTGAGAATTCTACCTATGATGAA..........................................................................................................................................................27127.0027.00--2.00-2.00-6.00-2.00--3.00-2.003.00-----1.00--1.00--2.00----------------1.001.00---------1.00----
.....................................................................TCATCTGAGAATTCTACCTATGATGAAA.........................................................................................................................................................28126.0026.006.008.002.00-2.00---1.00----1.00----------2.00-------1.001.00----1.00--------1.00-----------
.....................................................................TCATCTGAGAATTCTACCTATGATGAAAA........................................................................................................................................................29125.0025.0011.007.00--2.00---2.00--------2.00--1.00--------------------------------------
......................................................................................................................GGGTTAATTCTGATTATAGAG...............................................................................................................2116.006.00--6.00--------------------------------------------------------
.....................................................................TCATCTGAGAATTCTACCTATGATGA...........................................................................................................................................................2614.004.00---2.00------2.00------------------------------------------------
.............................................................................................................................................................................................................AGCAGAGAATTTCAAAGGACCTTG.....................2413.003.00-----1.00---------------2.00-------------------------------------
...................................................................................................................................................................................ATTGTCTTTTTGATGTTGTAGTG................................................2313.003.00------------3.00----------------------------------------------
......................................................................CATCTGAGAATTCTACCTATGAT.............................................................................................................................................................2313.003.00----------2.00-------1.00----------------------------------------
.....................................................................TCATCTGAGAATTCTACCTATGATG............................................................................................................................................................2513.003.00---1.00--------------1.00-----------------1.00----------------------
........................................................................................................................................................................................................TGAACAGCAGAGAATTTCAAAGGACCT.......................2712.002.00---------1.00------------------------------------------1.00------
..........................................................................TGAGAATTCTACCTATGAT.............................................................................................................................................................1912.002.00---2.00-------------------------------------------------------
.........................................................................................................................................................................................................GAACAGCAGAGAATTTCAAAGGA..........................2312.002.00---------------2.00-------------------------------------------
.......................................................................ATCTGAGAATTCTACCTATGAT.............................................................................................................................................................2212.002.00---2.00-------------------------------------------------------
.....................................................................TCATCTGAGAATTCTACCTATGATGAAAAATG.....................................................................................................................................................3212.002.00-------------------------------------------------1.00------1.00--
................................................................................................................................................................................................................AGAGAATTTCAAAGGACCTTGCT...................2312.002.00-----1.00-1.00---------------------------------------------------
..........................................................................TGAGAATTCTACCTATGATGAA..........................................................................................................................................................2212.002.00-----------1.00-------------------------1.00---------------------
........................................................................................................TGGTGGTAGCATTTGGG.................................................................................................................................1731.331.33---------------------------1.33-------------------------------
.................................................................................................................................................................................................GTTGTAGTGAACAGCAGAG......................................1911.001.00--1.00--------------------------------------------------------
..................................................................................................................................................................................................................AGAATTTCAAAGGACCTTGCTAATATA.............271.000.00---------------1.00-------------------------------------------
..................................................................................................................................ATTATAGAGTCTCTTGGAGAGCAATGTCC...........................................................................................2911.001.00-----------------------------1.00-----------------------------
........................................................................................................................................................................................................TGAACAGCAGAGAATTTCAAAGGACCTTGCTT..................3211.001.00---------1.00-------------------------------------------------
...................................................................................................................................................................................................TGTAGTGAACAGCAGAGAATTT.................................2211.001.00----------------------------------------1.00------------------
.....................................................................TCATCTGAGAATTCTACCTATGATGAAAC........................................................................................................................................................2911.0026.00-1.00---------------------------------------------------------
......................................................................................................................................................................................GTCTTTTTGATGTTGTAGTGAACAGCAGA.......................................2911.001.00--1.00--------------------------------------------------------
.................................................................................................................................................................................................................GAGAATTTCAAAGGACCTTGCT...................2211.001.00-------------------------1.00---------------------------------
...................................................................................................................................................................................................TGTAGTGAACAGCAGAG......................................1711.001.00---------------------------------------------1.00-------------
..............................................................................................................................................................................ACAACATTGTCTTTTTGGTTT.......................................................211.000.00------------------------------------------1.00----------------
..............................................................................................................................TCTGATTATAGAGTCTCTTGGA......................................................................................................2211.001.00-------1.00---------------------------------------------------
........................................................................................................................................................................................................................TCAAAGGACCTTGCTGTG................181.000.00-----------------------1.00-----------------------------------
.......................................................................................................................................................................................................................................AATATCTGTAAGACGGCA.1811.001.00-----1.00-----------------------------------------------------
..........................................................................................................................................................................................................AACAGCAGAGAATTTCAAAG............................2011.001.00-------------------------------------------------------1.00---
..............................................................................................................................................................................................................................GACCTTGCTAATATCTGTAAG.......2111.001.00-------------------------1.00---------------------------------
.................................................................................................................................................................................................GTTGTAGTGAACAGCAGAT......................................191.000.00--1.00--------------------------------------------------------
............................................................................................................................................................TCCATAAACTAATCCCAAACAACATCG...................................................................271.000.00----------------------------------------------------------1.00
........AACACCATAGCTTCGTTTTGTCTGAGAC......................................................................................................................................................................................................................2811.001.00------------1.00----------------------------------------------
.................................................................................................................................................................................................................GAGAATTTCAAAGGACCTTGCTAATATCTGTAAGA......3511.001.00----------------1.00------------------------------------------
........................................................................................................................................................................................................TGAACAGCAGAGAATTTCAAAGGACCTTGCT...................3111.001.00---------1.00-------------------------------------------------
...........................................................................................................................................................................................................................AAGGACCTTGCTAATATCTGTAAGACGGCA.3011.001.00---------1.00-------------------------------------------------
.............................................................................................................................................................................................................................GGACCTTGCTAATATCTGTAAGACGGCA.2811.001.00----------------1.00------------------------------------------
.......................................................................ATCTGAGAATTCTACCTATGATGAAAAA.......................................................................................................................................................2811.001.00--1.00--------------------------------------------------------
.........................................................................................................................................................................................................................................TATCTGTAAGACGGCA.1611.001.00-----1.00-----------------------------------------------------
....................................................................TTCATCTGAGAATTCTACCTATGATGAAAAA.......................................................................................................................................................3111.001.00----1.00------------------------------------------------------
..........................................................................................................................................................................................................................AAAGGACCTTGCTAATATCTGT..........2211.001.00-------1.00---------------------------------------------------
................................................................................................................................................................................................................AGAGAATTTCAAAGGACCT.......................1911.001.00--------------------------------------------------1.00--------
...................................................................................................................................................................................................TGTAGTGAACAGCAGAGAATTTC................................2311.001.00-----1.00-----------------------------------------------------
.........................................................................................................................................................................................................................CAAAGGACCTTGCTAATATCTGTAAGAC.....2811.001.00-------------------------------1.00---------------------------
...............................................................................................................................................................................................ATGTTGTAGTGAACAGCAGAGA.....................................2211.001.00-----------------------------------1.00-----------------------
.................................................................................................................................................................................................GTTGTAGTGAACAGCAGAGAATTTCA...............................2611.001.00-----------------------------------------------------1.00-----
.................GCTTCGTTTTGTCTGAGACTAC...................................................................................................................................................................................................................2211.001.00-----------------------------------------1.00-----------------
............................................................................................................................................................................................................................AGGACCTTGCTAATATCTGTAAG.......2311.001.00-----1.00-----------------------------------------------------
.....................................................................TCATCTGAGAATTCTACCTATGATGGAA.........................................................................................................................................................2811.003.00-1.00---------------------------------------------------------
...............................................................................................................................................................................................................CAGAGAATTTCAAAGGACC........................1911.001.00-------1.00---------------------------------------------------
........................................................................................................................................................................................................................TCAAAGGACCTTGCTGTTC...............191.000.00----------------------------1.00------------------------------
........................................................................................................................................................................................................................TCAAAGGACCTTGCTAATATCTGTAAGACGGT..321.000.00---------1.00-------------------------------------------------
...............................................................................................AAAATGTTGTGGTGGTAG.........................................................................................................................................1811.001.00------------------------------1.00----------------------------
..............................................................................................................................................................................................................GCAGAGAATTTCAAAGGACCTTG.....................2311.001.00---1.00-------------------------------------------------------
................................................................................................................................................................................................................AGAGAATTTCAAAGGACCTTG.....................2111.001.00------------------------------------------------1.00----------
.......................................................................ATCTGAGAATTCTACCTGA................................................................................................................................................................191.000.00----------------------------------1.00------------------------
.................................................................................................................................................................................................................GAGAATTTCAAAGGACC........................1711.001.00-------1.00---------------------------------------------------
............................................................................................................................................................................................................CAGCAGAGAATTTCAAAGGACCTT......................2411.001.00----------------------------------------------1.00------------
....................................................................TTCATCTGAGAATTCTACCTATGATGAAAA........................................................................................................................................................3011.001.001.00----------------------------------------------------------
.......................................................................ATCTGAGAATTCTACCTATGATGACAAA.......................................................................................................................................................281.000.00--1.00--------------------------------------------------------
......................................................................CATCTGAGAATTCTACCTATGATGAAAAA.......................................................................................................................................................2911.001.00---------------------------------------------------1.00-------
.....................................................................................................................................................................................................................ATTTCAAAGGACCTTG.....................1640.250.25-------0.25---------------------------------------------------
..........................................................................................................................................................................................................................AAAGGACCTTGCTAAT................1650.200.20----------------------------0.20------------------------------

Antisense strand
CTAATTCTAACACCATAGCTTCGTTTTGTCTGAGACTACGTTCCTTTTAATATAACTGAACTGTTTAATTCATCTGAGAATTCTACCTATGATGAAAAATGTTGTGGTGGTAGCATTTGGGTTAATTCTGATTATAGAGTCTCTTGGAGAGCAATGTCCATAAACTAATCCCAAACAACATTGTCTTTTTGATGTTGTAGTGAACAGCAGAGAATTTCAAAGGACCTTGCTAATATCTGTAAGACGGCAG
....................................................................................................................(((((...((((((....))))))....((((........)))).........)))))(((((((((......)))))))))....................................................
.................................................................................................................114.........................................................................................206..........................................
SizePerfect hitTotal NormPerfect NormSRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR553576(SRX182782)
source: Testis. (testes)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		GSM339995(GSM339995)
hues6NP. (cell line)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR189782SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR038862(GSM458545)
MM472. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR029131(GSM416760)
MCF7. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
............................................................................AGAATTCTACCTATGATGG........................................................................................................................................................... 192.000.00----------------------2.00------------------------------------
...........................................................................GAGAATTCTACCTATGC.............................................................................................................................................................. 171.000.00---------------------------------------1.00-------------------
..........................................................................................................................TAATTCTGATTATAGACT.............................................................................................................. 181.000.00-------------------1.00---------------------------------------
...............................................................................................................................................................ATAAACTAATCCCAAATTAT....................................................................... 201.000.00-------------------1.00---------------------------------------
........................................................................................ATGATGAAAAATGTTGTAAT.............................................................................................................................................. 201.000.00---------------------------------------------------------1.00-