ID: uc003ebm.2_intron_9_0_chr3_114619190_r.5p
GENE: (2)
chr3:114693013-114693262-


(4)
BRAIN
(1)
BREAST
(8)
CELL-LINE
(2)
HEART
(6)
LIVER
(2)
OTHER
(4)
SKIN

Sense strand
CAAATAAAAAGAAGTGTTAAGAATTGCCTTTGGGACTCTGAAGGCTGAAGGTAATGTCCAGTGGTATTTTCCTGAATGGGCTTTATCTTCTTGAATTGTCTTATAATATTTAAGGTCTTGGATTTGCTACCTCAACTTTTCTTTTATTTTATTATTTTTCTTTTATTGTCCTTAAACACATTAAATATCTTTTTCTATGTATACCTAAAAATAATATGAAATTGTAAGTTAAAAAGTAGAAATTTTATAC
........................................................................(((...(((...((((((((((((...........))))))))....))))..)))...)))....................................................................................................................
...................................................................68................................................................................150..................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR189784SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577580(Rovira)
total RNA. (breast)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR343336SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
..............................................................................................................................CTACCTCAACTTTTCTTTTATTTTATTATTTT............................................................................................32110.0010.004.004.00-----2.00----------------------
..............................................................................................................................CTACCTCAACTTTTCTTTTA........................................................................................................2027.507.503.00-2.002.50--------------------------
..............................................................................................................................CTACCTCAACTTTTCTTTTATTG.....................................................................................................236.000.003.002.001.00---------------------------
.........................................................................................................................ATTTGCTACCTCAACTTTTCTTTTA........................................................................................................2514.004.00--4.00---------------------------
..............................................................................................................................CTACCTCAACTTTTCTTTTATTTTATTG................................................................................................283.000.003.00-----------------------------
..............................................................................................................................CTACCTCAACTTTTCTTCTA........................................................................................................203.000.002.00--1.00--------------------------
............................................................................................................................................CTTTTATTTTATTATTTTTCTTTTATTG..................................................................................2812.002.001.00------1.00----------------------
...............................................................................................................................TACCTCAACTTTTCTTTTATTG.....................................................................................................222.000.002.00-----------------------------
..........................CCTTTGGGACTCTGAAGGCT............................................................................................................................................................................................................2012.002.00----2.00-------------------------
....................GAATTGCCTTTGGGACTCTGA.................................................................................................................................................................................................................2111.001.00------1.00-----------------------
.....................................................................................................................................AACTTTTCTTTTATTTCTT..................................................................................................191.000.00---------------------1.00--------
..............................TGGGACTCTGAAGGCTGA..........................................................................................................................................................................................................1811.001.00---------------------------1.00--
.......................................................................................................................................CTTTTCTTTTATTTTATTTTAG.............................................................................................221.000.001.00-----------------------------
.............................TTGGGACTCTGAAGGCTGAAGAAT.....................................................................................................................................................................................................2411.001.00-----------1.00------------------
.............................TTGGGACTCTGAAGGCTGAAGAATT....................................................................................................................................................................................................2511.001.00-----1.00------------------------
........................................................................TGAATGGGCTTTATCTTCTTG.............................................................................................................................................................2111.001.00-----1.00------------------------
......................................................................................................ATAATATTTAAGGTCTTGGATTTGCT..........................................................................................................................2611.001.00-----1.00------------------------
......................ATTGCCTTTGGGACTCTGAAGGCTG...........................................................................................................................................................................................................2511.001.00--------------------1.00---------
.............................TTGGGACTCTGAAGGCTGAAG........................................................................................................................................................................................................2111.001.00--------------------------1.00---
........................................................................................................................................TTTTCTTTTATTTTATTATTAACG..........................................................................................241.000.00-1.00----------------------------
...........................CTTTGGGACTCTGAAGGCT............................................................................................................................................................................................................1911.001.00-------------------------1.00----
........................................................................................................................................TTTTCTTTTATTTTATTATTTTTTAG........................................................................................261.000.00---1.00--------------------------
...........................CTTTGGGACTCTGAAGGCTGAAG........................................................................................................................................................................................................2311.001.00-------------1.00----------------
..........................CCTTTGGGACTCTGAAGGCTGAA.........................................................................................................................................................................................................2311.001.00-----1.00------------------------
......................................................................................................................................ACTTTTCTTTTATTTTTGAC................................................................................................201.000.00----------1.00-------------------
...................................CTCTGAAGGCTGAAGTGA.....................................................................................................................................................................................................181.000.00-----------------------1.00------
..............................................................................................................................................................................AACACATTAAATATCTAG..........................................................181.000.00---------1.00--------------------
......................................................................................................................................ACTTTTCTTTTATTTTATTTTA..............................................................................................221.000.001.00-----------------------------
.......................TTGCCTTTGGGACTCTGAAGGCTG...........................................................................................................................................................................................................2411.001.00--------1.00---------------------
......................................................................................................................................ACTTTTCTTTTATTTGAG..................................................................................................181.000.00----------1.00-------------------
.......................................................................................................................................CTTTTCTTTTATTTTATTATTTTTCTTTTATTG..................................................................................3311.001.001.00-----------------------------
........................TGCCTTTGGGACTCTGAAGGCTG...........................................................................................................................................................................................................2311.001.00--------1.00---------------------
............................TTTGGGACTCTGAAGGCTGAAGA.......................................................................................................................................................................................................231.000.00------------------1.00-----------
..............................TGGGACTCTGAAGGCTGAAGAA......................................................................................................................................................................................................221.000.00-----------1.00------------------
.............................................................................................................................................TTTTATTTTATTATTCTAG..........................................................................................191.000.001.00-----------------------------
............................................................................................................................................CTTTTATTTTATTATTTTTCTTTTATTT..................................................................................281.000.001.00-----------------------------
.....................................................................................................................................AACTTTTCTTTTATTTTATTATTTTTC..........................................................................................2711.001.00---1.00--------------------------
.......................TTGCCTTTGGGACTCTGAAGGC.............................................................................................................................................................................................................2211.001.00---------------1.00--------------
...........................CTTTGGGACTCTGAAGGCTG...........................................................................................................................................................................................................2011.001.00------------------------1.00-----
..........................................................................................................................................TTCTTTTATTTTATTATTTCAG..........................................................................................221.000.00-1.00----------------------------
............................TTTGGGACTCTGAAGGCTGCAG........................................................................................................................................................................................................221.000.00------1.00-----------------------
..................................ACTCTGAAGGCTGAAGGTAATG..................................................................................................................................................................................................2211.001.00----1.00-------------------------
............................................................................................................................................CTTTTATTTTATTATTTTTC..........................................................................................2011.001.00---1.00--------------------------
.........................................................................................................................................TTTCTTTTATTTTATTATTTTTCTTATTG....................................................................................291.000.00-1.00----------------------------
..........................CCTTTGGGACTCTGAAGGCTGA..........................................................................................................................................................................................................2211.001.00----------------------1.00-------
..............................TGGGACTCTGAAGGCTGAAGAATT....................................................................................................................................................................................................241.000.00----1.00-------------------------
.............................TTGGGACTCTGAAGGCTGAAGA.......................................................................................................................................................................................................2211.001.00------1.00-----------------------
..............................TGGGACTCTGAAGGCTGAAGAAT.....................................................................................................................................................................................................231.000.00------------1.00-----------------
...........................CTTTGGGACTCTGAAGGC.............................................................................................................................................................................................................1811.001.00----------------1.00-------------
................................GGACTCTGAAGGCTGAAGAA......................................................................................................................................................................................................201.000.00----1.00-------------------------
..............................................................................................................................CTACCTCAACTTTTCTTTTACTG.....................................................................................................2320.507.500.50-----------------------------
...............................GGGACTCTGAAGGCTGA..........................................................................................................................................................................................................1750.400.40----------------------------0.200.20
......................................................................................................................................ACTTTTCTTTTATTTTAT..................................................................................................1850.200.20--0.20---------------------------
......................................................................................................................................ACTTTTCTTTTATTTTACCAT...............................................................................................2190.110.11--0.11---------------------------
......................................................................................................................................ACTTTTCTTTTATTTTA...................................................................................................1790.110.11--0.11---------------------------

Antisense strand
CAAATAAAAAGAAGTGTTAAGAATTGCCTTTGGGACTCTGAAGGCTGAAGGTAATGTCCAGTGGTATTTTCCTGAATGGGCTTTATCTTCTTGAATTGTCTTATAATATTTAAGGTCTTGGATTTGCTACCTCAACTTTTCTTTTATTTTATTATTTTTCTTTTATTGTCCTTAAACACATTAAATATCTTTTTCTATGTATACCTAAAAATAATATGAAATTGTAAGTTAAAAAGTAGAAATTTTATAC
........................................................................(((...(((...((((((((((((...........))))))))....))))..)))...)))....................................................................................................................
...................................................................68................................................................................150..................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR189784SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577580(Rovira)
total RNA. (breast)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR343336SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
.......................................................................................................................................................................................AATATCTTTTTCTATCTTC................................................ 191.000.00--1.00---------------------------
.............................................................................................AATTGTCTTATAATATTTTT......................................................................................................................................... 201.000.00--------------1.00---------------
.....................................................................................................................................................................................................................ATATGAAATTGTAAGCAG................... 181.000.00---------1.00--------------------
...................................................................................................................................................................................................................TAATATGAAATTGTAG....................... 161.000.00-------------------1.00----------
...................................................................................................................TCTTGGATTTGCTACCTCAGTAA................................................................................................................ 231.000.00-----------------1.00------------