ID: uc003eay.2_intron_6_0_chr3_113795790_f.5p
GENE: (7)
chr3:113795740-113795989+


(1)
AGO2.ip 		(3)
B-CELL 		(2)
BRAIN 		(1)
BREAST 		(12)
CELL-LINE 		(8)
HELA 		(2)
LIVER 		(1)
OTHER 		(3)
SKIN 		(1)
XRN.ip

Sense strand
CTACGCTTGCTGTCATCAGTCACTGCAGAGCTGCCGGAGGACAAGCCAAGGCCAGTGTTCGGTTAGGACACAGGCTGGCCTCAAGGGATGCAGGGAAGGAGTGCTGGCCGATTGTATATTAAATAGTGTCTGTGCATAGGCATGCCTTTGATGTTTTGTTTATGTCCTTTCTGGGCTGAGTCTGCTGAGGTGCTGAGGCAGACTGTAAGGGGAGTTTCCATCAAGGCTGTCCTGGCCTTGATTTCAGAAT
.........................................................................................((.((((((((....((..(((....((((((((..(((((((....)))))))...)))))))).)))..))..))))))))..))...((((((......))..))))...................................................
......................................................................................87...............................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormDRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		GSM359202(GSM359202)
hepg2_untreated_a. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM359175(GSM359175)
hela_5_pct. (hela)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM359203(GSM359203)
hepg2_untreated_b. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
..............................................................................................................................................TGCCTTTGATGTTTTGTTTATGTCCTTTCTGGGCTGAGTCTGCTGAGGTGCTGAGGCAG.................................................59119.0019.0012.002.00-4.00---1.00------------------------
..............................................................................................................................................TGCCTTTGATGTTTTGTTTATGTCCTTTCTGGGCTGAGTCTGCTGAGGTG..........................................................50115.0015.008.005.00-1.00------------------1.00---------
..............................................................................................................................................TGCCTTTGATGTTTTGTTTATGTCCTTTCTGGGCTGAGTCTGCTGAGGTGC.........................................................51110.0010.004.005.00-----1.00------------------------
..............................................................................................................................................TGCCTTTGATGTTTTGTTTATGTCCTTTCTGGGCTGAGTCTGCTGAGGTA..........................................................502.000.002.00-------------------------------
........................................................................................................................................................................TTCTGGGCTGAGTCTGCTGAGGTGC.........................................................2512.002.00------2.00-------------------------
......................................................................................................................................................ATGTTTTGTTTATGTCCTTTCTGGGCCGAG......................................................................302.000.00--2.00-----------------------------
........................GCAGAGCTGCCGGAGGACAAGCCAAGGC......................................................................................................................................................................................................2812.002.00---------2.00----------------------
..............................................................................................................................................TGCCTTTGATGTTTTGTTTATGTCCTTT................................................................................2812.002.00-----------1.00----------------1.00---
...............................................................................................................................................GCCTTTGATGTTTTGTTTATGTCCTTTCTGGGCTGAGTCTGCTGAGGTGC.........................................................5012.002.001.001.00------------------------------
................................GCCGGAGGACAAGCCAAG........................................................................................................................................................................................................1812.002.00-----------------------1.00--1.00-----
...................................................................................AGGGATGCAGGGAAGGAGTGCTGGCCGATGTAT......................................................................................................................................332.000.00-----2.00--------------------------
...........................................................................................................................................................................TGGGCTGAGTCTGCTGAGGTGC.........................................................2212.002.00----2.00---------------------------
...........................................................................................AGGGAAGGAGTGCTGGCCGA...........................................................................................................................................2011.001.00-------------------------------1.00
..............ATCAGTCACTGCAGAGCTGCCGGAGGA.................................................................................................................................................................................................................2711.001.00------------1.00-------------------
.....................................AGGACAAGCCAAGGCTCA...................................................................................................................................................................................................181.000.00-------------1.00------------------
...........................................................................................................................................................................................AGGTGCTGAGGCAGACTGTAAGGGGAG....................................2711.001.00-----1.00--------------------------
.............................................................................................................................................................................................GTGCTGAGGCAGACTGTAA..........................................1911.001.00-----------------1.00--------------
..........TGTCATCAGTCACTGCAGAGCTG.........................................................................................................................................................................................................................2311.001.00-------------------1.00------------
...................TCACTGCAGAGCTGCCGGAGGACAAGCCA..........................................................................................................................................................................................................2911.001.00------------------1.00-------------
.....................................................................................................................................................................................................................................TCCTGGCCTTGATTTCAGAATAGAG251.000.00--1.00-----------------------------
.............................................................................................................................................ATGCCTTTGATGTTTTGTTTATGTCC...................................................................................2611.001.00----------------1.00---------------
.....................................................................................................................................................................................................GCAGACTGTAAGGGGA.....................................1611.001.00----1.00---------------------------
.....................................................................................................................................................................CCTTTCTGGGCTGAGTCTGCTGAGGTGCTGAGG....................................................3311.001.00----------1.00---------------------
........................................................................................................................................................................TTCTGGGCTGAGTCTGCTGAGGGGC.........................................................251.000.00------1.00-------------------------
.................AGTCACTGCAGAGCTGCCGGAGGACAAGCCAAG........................................................................................................................................................................................................3311.001.00--1.00-----------------------------
.................................................................................CAAGGGATGCAGGGAAGGAGTGC..................................................................................................................................................2311.001.00--------1.00-----------------------
...........................................................CGGTTAGGACACAGGCTGGC...........................................................................................................................................................................2011.001.00------------------------------1.00-
.........CTGTCATCAGTCACTGCAGAGCTGCCGGAGG..................................................................................................................................................................................................................3111.001.00--------------1.00-----------------
...................................................................................AGGGATGCAGGGAAGGAGTGCTGGCCGACTG........................................................................................................................................311.000.00--1.00-----------------------------
..............................................................................................................................................TGCCTTTGATGTTTTGTTT.........................................................................................1911.001.00------1.00-------------------------
..........................................................................................................................................................................................GAGGTGCTGAGGCAGACTGT............................................2011.001.00-------------------------1.00------
...............................................................................................................................................................................................GCTGAGGCAGACTGTAAG.........................................1811.001.00------------------------1.00-------
.................................CCGGAGGACAAGCCAAG........................................................................................................................................................................................................1711.001.00----1.00---------------------------
....................CACTGCAGAGCTGCCGGAGGAC................................................................................................................................................................................................................2211.001.00-----------------------------1.00--
.............................................................................................................................................ATGCCTTTGATGTTTTGTTTATGTCCTTTCTGGGCTGAGTCTGCTGAGGTGCTGAGGCAG.................................................6011.001.00-------1.00------------------------
.........................................CAAGCCAAGGCCAGTGTGTTC............................................................................................................................................................................................211.000.00---------------------1.00----------
...............................................................................................AAGGAGTGCTGGCCGATTGTATA....................................................................................................................................2311.001.00---------------------------1.00----
................................................................................................................................................................................................CTGAGGCAGACTGTAAGGGGAGTTTCC...............................2711.001.00--1.00-----------------------------
...........................................AGCCAAGGCCAGTGTTCGGTCAGG.......................................................................................................................................................................................241.000.00-----1.00--------------------------
.................................................................................................................................................................................................TGAGGCAGACTGTAAGGGGA.....................................2011.001.00--------------------1.00-----------
................................GCCGGAGGACAAGCCAAGG.......................................................................................................................................................................................................1911.001.00---------------1.00----------------
....................CACTGCAGAGCTGCCGGAGGACAAGCCAAG........................................................................................................................................................................................................3011.001.00--------1.00-----------------------
.........................CAGAGCTGCCGGAGGACA...............................................................................................................................................................................................................1811.001.00----------1.00---------------------

Antisense strand
CTACGCTTGCTGTCATCAGTCACTGCAGAGCTGCCGGAGGACAAGCCAAGGCCAGTGTTCGGTTAGGACACAGGCTGGCCTCAAGGGATGCAGGGAAGGAGTGCTGGCCGATTGTATATTAAATAGTGTCTGTGCATAGGCATGCCTTTGATGTTTTGTTTATGTCCTTTCTGGGCTGAGTCTGCTGAGGTGCTGAGGCAGACTGTAAGGGGAGTTTCCATCAAGGCTGTCCTGGCCTTGATTTCAGAAT
.........................................................................................((.((((((((....((..(((....((((((((..(((((((....)))))))...)))))))).)))..))..))))))))..))...((((((......))..))))...................................................
......................................................................................87...............................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormDRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		GSM359202(GSM359202)
hepg2_untreated_a. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM359175(GSM359175)
hela_5_pct. (hela)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM359203(GSM359203)
hepg2_untreated_b. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)