ID: uc003eao.2_intron_0_0_chr3_113465961_f.5p
GENE: (1)
chr3:113465911-113466160+


(14)
B-CELL 		(2)
BRAIN 		(15)
BREAST 		(19)
CELL-LINE 		(7)
CERVIX 		(1)
FIBROBLAST 		(7)
HEART 		(3)
HELA 		(1)
KIDNEY 		(8)
LIVER 		(2)
OTHER 		(26)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
AGCCTCTGGGTCCTCGGTCGGTACAGTCTCTGCACCTCGCGCCCCAGCAGGTGAGCGGCGACCGGTAACTGGCGAGTGGTGGGGATAGAGGGGGTGGAAGGAGGCAGAGGAAGGAGAGAAGGGAGAGTGTGAACGGCGACTTTTCTGCCTGAGGCTTCCTCCCCGCTGTCACCCTGCACCGGCAAGGAGCTCATTTCTCCTTAACCCCCGCTCCCCCAAGTGTGGTCGTTCCCGCTACTTGGGGATTCAG
.....................................................................((.((.(((..((((((((.((((.....(((((((......((((((((((.....((....)).....))))))).)))...))))))))))).))))).)))..))))).)).((((.......))))..................................................
....................................................................69.................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormDRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR040007(GSM532892)
G601T. (cervix)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR040015(GSM532900)
G623T. (cervix)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR343336SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR191409(GSM715519)
19genomic small RNA (size selected RNA from t. (breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040018(GSM532903)
G701N. (cervix)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR191419(GSM715529)
41genomic small RNA (size selected RNA from t. (breast)		TAX577580(Rovira)
total RNA. (breast)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR444065(SRX128913)
Sample 22cDNABarcode: AF-PP-335: ACG CTC TTC . (cell line)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532874(GSM532874)
G699T. (cervix)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040031(GSM532916)
G013T. (cervix)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR191570(GSM715680)
56genomic small RNA (size selected RNA from t. (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR191402(GSM715512)
43genomic small RNA (size selected RNA from t. (breast)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		TAX577743(Rovira)
total RNA. (breast)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR191486(GSM715596)
125genomic small RNA (size selected RNA from . (breast)		SRR037936(GSM510474)
293cand1. (cell line)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR040028(GSM532913)
G026N. (cervix)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
..................CGGTACAGTCTCTGCACC......................................................................................................................................................................................................................18118.0018.001.0017.00----------------------------------------------------------------------------------------------------------
............CTCGGTCGGTACAGTCTC............................................................................................................................................................................................................................18116.0016.0011.00-2.00-------2.00----------------------------------------------------------------------------------1.00--------------
............CTCGGTCGGTACAGTCTCTG..........................................................................................................................................................................................................................20113.0013.001.00--4.00------1.00-------1.00--1.00-1.00------------1.00--------------1.00----------------------------------1.00----------------1.00----
..............CGGTCGGTACAGTCTCTGC.........................................................................................................................................................................................................................19110.0010.003.00-2.00-----------1.00--------------1.00--------1.00-----1.00-----------1.00---------------------------------------------------
..............CGGTCGGTACAGTCTCTG..........................................................................................................................................................................................................................1817.007.001.002.002.00---------------------------------1.00------------------------1.00----------------------------------------------
............CTCGGTCGGTACAGTCTCTGC.........................................................................................................................................................................................................................2116.006.001.00-------------1.00--------1.00---------------------1.00---1.00---------------------------------------------1.00------------
...CTCTGGGTCCTCGGTCGGTA...................................................................................................................................................................................................................................2014.004.00----1.00--------------------------------------1.00------------------------------1.00------1.00--------------------------
.........................................................................GAGTGGTGGGGATAGAGGGG.............................................................................................................................................................2014.004.00-----4.00------------------------------------------------------------------------------------------------------
.............TCGGTCGGTACAGTCTC............................................................................................................................................................................................................................1714.004.004.00-----------------------------------------------------------------------------------------------------------
..............................................................................GTGGGGATAGAGGGGGTGGAAGGAGGC.................................................................................................................................................2714.004.00------4.00-----------------------------------------------------------------------------------------------------
.........GTCCTCGGTCGGTACAGT...............................................................................................................................................................................................................................1813.003.00----3.00-------------------------------------------------------------------------------------------------------
.........GTCCTCGGTCGGTACAGTCT.............................................................................................................................................................................................................................2013.003.00----1.00-----1.00----------------------1.00--------------------------------------------------------------------------
.....CTGGGTCCTCGGTCGGTACAG................................................................................................................................................................................................................................2113.003.00---------1.00---------------------------1.00----------------------------------------------------1.00-----------------
.......................................................CGGCGACCGGTAACTGG..................................................................................................................................................................................1713.003.002.00-1.00---------------------------------------------------------------------------------------------------------
............CTCGGTCGGTACAGTCTCTGCACCT.....................................................................................................................................................................................................................2513.003.00--1.00----------------------------------------------------1.00-----------1.00----------------------------------------
...CTCTGGGTCCTCGGTCGG.....................................................................................................................................................................................................................................1813.003.00------------2.00--------------------------------------------------------1.00--------------------------------------
.............TCGGTCGGTACAGTCTCTG..........................................................................................................................................................................................................................1913.003.00--------2.00-------1.00-------------------------------------------------------------------------------------------
...........CCTCGGTCGGTACAGTCTCTG..........................................................................................................................................................................................................................2113.003.00-----------------1.00----1.00-------------------1.00-----------------------------------------------------------------
............CTCGGTCGGTACAGTCTCTGCACCTCG...................................................................................................................................................................................................................2713.003.00--2.00-----------------------------------------------------------------1.00---------------------------------------
........................................................GGCGACCGGTAACTGGCGAGT.............................................................................................................................................................................2113.003.00-------3.00----------------------------------------------------------------------------------------------------
......TGGGTCCTCGGTCGGTACAGT...............................................................................................................................................................................................................................2113.003.00--------------------------------2.00--------------------------------------------------------------------1.00------
...............GGTCGGTACAGTCTC............................................................................................................................................................................................................................1513.003.003.00-----------------------------------------------------------------------------------------------------------
...CTCTGGGTCCTCGGTCGGTAC..................................................................................................................................................................................................................................2113.003.00------2.00----------------------------1.00------------------------------------------------------------------------
.GCCTCTGGGTCCTCGGTCGGTA...................................................................................................................................................................................................................................2212.002.00-----------------------------------1.00------------------------------------------------------------------1.00-----
.............TCGGTCGGTACAGTCTCTGCACCTCGCG.................................................................................................................................................................................................................2812.002.00---------------2.00--------------------------------------------------------------------------------------------
................................................................................................................................................................................CACCGGCAAGGAGCTCATTTCT....................................................2212.002.002.00-----------------------------------------------------------------------------------------------------------
..............CGGTCGGTACAGTCTCTGCA........................................................................................................................................................................................................................2012.002.00--------1.00-----------------------------------------------------1.00---------------------------------------------
................GTCGGTACAGTCTCTGCACCTCGCG.................................................................................................................................................................................................................2512.002.00--------2.00---------------------------------------------------------------------------------------------------
...............................................CAGGTGAGCGGCGACCGG.........................................................................................................................................................................................1812.002.00-----------1.00----------------------------------------------------------------------------1.00-------------------
....................................................GAGCGGCGACCGGTAACTGGC.................................................................................................................................................................................2112.002.00-------------------------------2.00----------------------------------------------------------------------------
.GCCTCTGGGTCCTCGGTC.......................................................................................................................................................................................................................................1812.002.00-----2.00------------------------------------------------------------------------------------------------------
................................................................................................GAAGGAGGCAGAGGAAGAATA.....................................................................................................................................212.000.00----------------------------------1.00-----------1.00-------------------------------------------------------------
.......................................................................................................................AGGGAGAGTGTGAACGGC.................................................................................................................1822.002.00----------------------------------------1.50----------------------------------------------------------------0.50--
....................................................GAGCGGCGACCGGTAACTGG..................................................................................................................................................................................2012.002.00-------------------1.00---------------------------------------------------------1.00------------------------------
.......................................................CGGCGACCGGTAACTGGCGAG..............................................................................................................................................................................2112.002.00----1.00-------1.00-----------------------------------------------------------------------------------------------
.................TCGGTACAGTCTCTGCACCTCGCAA................................................................................................................................................................................................................252.000.00----------------------------2.00-------------------------------------------------------------------------------
............CTCGGTCGGTACAGTCT.............................................................................................................................................................................................................................1712.002.00---------------------------------------------------------1.00---------------------------1.00----------------------
.......................................................CGGCGACCGGTAACTGGCGAGTG............................................................................................................................................................................2312.002.00-------2.00----------------------------------------------------------------------------------------------------
............................................................ACCGGTAACTGGCGAGTGGT..........................................................................................................................................................................2012.002.00---2.00--------------------------------------------------------------------------------------------------------
..CCTCTGGGTCCTCGGTCGGTA...................................................................................................................................................................................................................................2111.001.00------------------------------------------------1.00-----------------------------------------------------------
.............TCGGTCGGTACAGTCTCTGCACCT.....................................................................................................................................................................................................................2411.001.00------------------------------------------------------------------------------1.00-----------------------------
..............................................................CGGTAACTGGCGAGTGGTG.........................................................................................................................................................................1911.001.00-------1.00----------------------------------------------------------------------------------------------------
......................ACAGTCTCTGCACCTCGCGC................................................................................................................................................................................................................2011.001.00---------1.00--------------------------------------------------------------------------------------------------
..........................................................................................................................GAGAGTGTGAACGGCGACTT............................................................................................................2011.001.00---------------------------------1.00--------------------------------------------------------------------------
..............CGGTCGGTACAGTCTCTGCAC.......................................................................................................................................................................................................................2111.001.00-----------------------------------------------------1.00------------------------------------------------------
........................AGTCTCTGCACCTCGCGCCCCAGCAGGC......................................................................................................................................................................................................281.000.00----------------------------------------------------------------------------------1.00-------------------------
............................................................ACCGGTAACTGGCGAGAGGG..........................................................................................................................................................................201.000.00---1.00--------------------------------------------------------------------------------------------------------
.................................................................................................................GAGAGAAGGGAGAGTGTGAACGG..................................................................................................................2311.001.00-------------1.00----------------------------------------------------------------------------------------------
............CTCGGTCGGTACAGTCTCT...........................................................................................................................................................................................................................1911.001.00------------------1.00-----------------------------------------------------------------------------------------
.............TCGGTCGGTACAGTCTCTGCA........................................................................................................................................................................................................................2111.001.00----------------------------------------------------------------------------1.00-------------------------------
..........................................................CGACCGGTAACTGGCGAGTGGTG.........................................................................................................................................................................2311.001.00---------------------------1.00--------------------------------------------------------------------------------
......................................................GCGGCGACCGGTAACTGGCGAGT.............................................................................................................................................................................2311.001.00---------------------------1.00--------------------------------------------------------------------------------
............................................................ACCGGTAACTGGCGAGTGGTG.........................................................................................................................................................................2111.001.00---------------------------------------------------------------------------1.00--------------------------------
......................................................................................................GGCAGAGGAAGGAGAGAAGG................................................................................................................................2011.001.00-----------------------------------------------------------------1.00------------------------------------------
........................................GCCCCAGCAGGTGAGCG.................................................................................................................................................................................................1711.001.00--------------------------------------------------------------------------------1.00---------------------------
................GTCGGTACAGTCTCTGCACCT.....................................................................................................................................................................................................................2111.001.00---1.00--------------------------------------------------------------------------------------------------------
...................................................................................................................GAGAAGGGAGAGTGTGAAAGGC.................................................................................................................221.000.00---------------------------------------1.00--------------------------------------------------------------------
............................................................ACCGGTAACTGGCGAGTGGTGGG.......................................................................................................................................................................2311.001.00-------------------------------------------------------------------------------------------1.00----------------
........GGTCCTCGGTCGGTACAG................................................................................................................................................................................................................................1811.001.00-----1.00------------------------------------------------------------------------------------------------------
...CTCTGGGTCCTCGGTCGGTACAGTCTCTGCACCTCGCGCCCCAGCAGGTGAGCGGCGACCG..........................................................................................................................................................................................6111.001.00--------------------------------------1.00---------------------------------------------------------------------
......................ACAGTCTCTGCACCTCGC..................................................................................................................................................................................................................1811.001.00--1.00---------------------------------------------------------------------------------------------------------
........................................................................................AGGGGGTGGAAGGAGGCA................................................................................................................................................1811.001.00-----------1.00------------------------------------------------------------------------------------------------
.......................CAGTCTCTGCACCTCGCGCCCCAGCAGGC......................................................................................................................................................................................................291.000.00------------------------------1.00-----------------------------------------------------------------------------
............CTCGGTCGGTACAGTCTCTGCA........................................................................................................................................................................................................................2211.001.00---------------------------------------------------------------------------------------------------1.00--------
...................................................................................................................GAGAAGGGAGAGTGTGAACGGCG................................................................................................................2311.001.00----------------------------------------------------------1.00-------------------------------------------------
....................GTACAGTCTCTGCACC......................................................................................................................................................................................................................1611.001.00-----------------------------1.00------------------------------------------------------------------------------
.................................ACCTCGCGCCCCAGCAGGTGAG...................................................................................................................................................................................................2211.001.00-----------1.00------------------------------------------------------------------------------------------------
.................TCGGTACAGTCTCTGC.........................................................................................................................................................................................................................1611.001.00---------------------------------------------------------------------------------------1.00--------------------
................................................................................................................................................................................................................................GTCGTTCCCGCTACTTGGGA......201.000.00----------------------------------------------------------------------------------------------1.00-------------
...........CCTCGGTCGGTACAGTCT.............................................................................................................................................................................................................................1811.001.00------------------1.00-----------------------------------------------------------------------------------------
............CTCGGTCGGTACAGTCTCTGCACCA.....................................................................................................................................................................................................................2511.001.00-----------------------------------------------------------------------------------1.00------------------------
..............CGGTCGGTACAGTCTCTGCACCT.....................................................................................................................................................................................................................2311.001.00----------------1.00-------------------------------------------------------------------------------------------
................................................................................................................GGAGAGAAGGGAGAGTGG........................................................................................................................181.000.00-------------------------------------1.00----------------------------------------------------------------------
..............................................................................................................................GTGTGAACGGCGACTTTTCTGC......................................................................................................2211.001.00-----------------------------------------------------------------------1.00------------------------------------
...........CCTCGGTCGGTACAGTCTCTGCAC.......................................................................................................................................................................................................................2411.001.00---------1.00--------------------------------------------------------------------------------------------------
..............CGGTCGGTACAGTCTCTGCACCTCGC..................................................................................................................................................................................................................2611.001.00--------------------------------------------------1.00---------------------------------------------------------
.............TCGGTCGGTACAGTCTCTGC.........................................................................................................................................................................................................................2011.001.00--1.00---------------------------------------------------------------------------------------------------------
................GTCGGTACAGTCTCTGC.........................................................................................................................................................................................................................1711.001.00---------------------1.00--------------------------------------------------------------------------------------
...................................................................................................................GAGAAGGGAGAGTGTGAACGG..................................................................................................................2111.001.00---------1.00--------------------------------------------------------------------------------------------------
.GCCTCTGGGTCCTCGGTCGGTAC..................................................................................................................................................................................................................................2311.001.00--------------------------1.00---------------------------------------------------------------------------------
................GTCGGTACAGTCTCTGCACCTCG...................................................................................................................................................................................................................2311.001.00----------------1.00-------------------------------------------------------------------------------------------
.......................................................CGGCGACCGGTAACTGGCG................................................................................................................................................................................1911.001.00-----------------------------------------1.00------------------------------------------------------------------
.......GGGTCCTCGGTCGGTACAG................................................................................................................................................................................................................................1911.001.00-----------1.00------------------------------------------------------------------------------------------------
........GGTCCTCGGTCGGTACAGT...............................................................................................................................................................................................................................1911.001.00-----------------------------------------------------------------------------------------1.00------------------
...............................................................................................................AGGAGAGAAGGGAGAGTG.........................................................................................................................1831.001.00-----0.67----------------------------------------------------------------------------------------------------0.33-
.........GTCCTCGGTCGGTACAG................................................................................................................................................................................................................................1711.001.00-----------------------------------------------1.00------------------------------------------------------------
..........TCCTCGGTCGGTACAGTCTCTG..........................................................................................................................................................................................................................2211.001.00----------------------------------------------------1.00-------------------------------------------------------
................GTCGGTACAGTCTCTGCCCC......................................................................................................................................................................................................................2011.001.00---1.00--------------------------------------------------------------------------------------------------------
............................................................................................GGTGGAAGGAGGCAGAATTG..........................................................................................................................................201.000.00----------------------------------1.00-------------------------------------------------------------------------
...CTCTGGGTCCTCGGTCGGTGC..................................................................................................................................................................................................................................211.000.00-------------------------1.00----------------------------------------------------------------------------------
.GCCTCTGGGTCCTCGGTCGGTACAG................................................................................................................................................................................................................................2511.001.00--------------1.00---------------------------------------------------------------------------------------------
..CCTCTGGGTCCTCGGTCGGTACA.................................................................................................................................................................................................................................2311.001.00---------1.00--------------------------------------------------------------------------------------------------
................GTCGGTACAGTCTCTGCACC......................................................................................................................................................................................................................2011.001.00---1.00--------------------------------------------------------------------------------------------------------
.....CTGGGTCCTCGGTCGGTA...................................................................................................................................................................................................................................1811.001.00----------------------1.00-------------------------------------------------------------------------------------
.............TCGGTCGGTACAGTCTCTGCACCTCG...................................................................................................................................................................................................................2611.001.00-------------1.00----------------------------------------------------------------------------------------------
..............CGGTCGGTACAGTCT.............................................................................................................................................................................................................................1511.001.00-----------------1.00------------------------------------------------------------------------------------------
............CTCGGTCGGTACAGTCTCAGC.........................................................................................................................................................................................................................2111.0016.00---------------1.00--------------------------------------------------------------------------------------------
....................................................................................ATAGAGGGGGTGGAAGGAGGCAGAG.............................................................................................................................................2511.001.00----------------------------------------------------------------------------------------------------1.00-------
......TGGGTCCTCGGTCGGTACA.................................................................................................................................................................................................................................1911.001.00---------------------------------------------------------------1.00--------------------------------------------
...................................................................................................................................AACGGCGACTTTTCTGCCTGAGGC...............................................................................................2411.001.00--------------------1.00---------------------------------------------------------------------------------------
......................................................GCGGCGACCGGTAACTGG..................................................................................................................................................................................1811.001.00----1.00-------------------------------------------------------------------------------------------------------
............................................................ACCGGTAACTGGCGAGTGG...........................................................................................................................................................................1911.001.00-------------------------------------------------------------------------1.00----------------------------------
.............................................................................GGTGGGGATAGAGGGGCG...........................................................................................................................................................181.000.00-----------------------------------------------------------1.00------------------------------------------------
...................................................TGAGCGGCGACCGGTAACTG...................................................................................................................................................................................2011.001.00------------------------------------------------------------------------1.00-----------------------------------
............CTCGGTCGGTACAGT...............................................................................................................................................................................................................................1511.001.001.00-----------------------------------------------------------------------------------------------------------
..........TCCTCGGTCGGTACAGTCTCTGC.........................................................................................................................................................................................................................2311.001.00--1.00---------------------------------------------------------------------------------------------------------
........GGTCCTCGGTCGGTACAGTCTCTG..........................................................................................................................................................................................................................2411.001.00-----------------1.00------------------------------------------------------------------------------------------
...........................CTCTGCACCTCGCGCCC..............................................................................................................................................................................................................1711.001.00------------------------------------------------------------------1.00-----------------------------------------
.................TCGGTACAGTCTCTGCAC.......................................................................................................................................................................................................................1811.001.00------------------------------------------------------------------------------------------------1.00-----------
..............................................................CGGTAACTGGCGAGTGGTGGG.......................................................................................................................................................................2111.001.00-------------------1.00----------------------------------------------------------------------------------------
............CTCGGTCGGTACAGTCTCTGCACC......................................................................................................................................................................................................................2411.001.00------------------------------------------------------------------------------------1.00-----------------------
............................TCTGCACCTCGCGCCCCAGCAGGTGAGC..................................................................................................................................................................................................2811.001.00-------------------------------------------------------------------------------------------------1.00----------
..............................................................................................................................GTGTGAACGGCGACTTTTCT........................................................................................................2011.001.00-------------------------------------------------------------------------------1.00----------------------------
................................................................................GGGGATAGAGGGGGTGGAA.......................................................................................................................................................1911.001.00--------------------1.00---------------------------------------------------------------------------------------
...............GGTCGGTACAGTCTCTG..........................................................................................................................................................................................................................1711.001.00--1.00---------------------------------------------------------------------------------------------------------
......TGGGTCCTCGGTCGG.....................................................................................................................................................................................................................................1511.001.00-------------1.00----------------------------------------------------------------------------------------------
............................TCTGCACCTCGCGCCCCAGC..........................................................................................................................................................................................................2011.001.00--------------------------------------------------------------------------------------------1.00---------------
.............................CTGCACCTCGCGCCCCAGC..........................................................................................................................................................................................................1920.500.50--------------------------------------------------------------------------------------------------------0.50---
........................................................................................................................GGGAGAGTGTGAACGGC.................................................................................................................1720.500.50---------------------------------------0.50--------------------------------------------------------------------
..................CGGTACAGTCTCTGCCCC......................................................................................................................................................................................................................1820.500.50-0.50----------------------------------------------------------------------------------------------------------
..................CGGTACAGTCTCTGC.........................................................................................................................................................................................................................1520.500.50--0.50---------------------------------------------------------------------------------------------------------

Antisense strand
AGCCTCTGGGTCCTCGGTCGGTACAGTCTCTGCACCTCGCGCCCCAGCAGGTGAGCGGCGACCGGTAACTGGCGAGTGGTGGGGATAGAGGGGGTGGAAGGAGGCAGAGGAAGGAGAGAAGGGAGAGTGTGAACGGCGACTTTTCTGCCTGAGGCTTCCTCCCCGCTGTCACCCTGCACCGGCAAGGAGCTCATTTCTCCTTAACCCCCGCTCCCCCAAGTGTGGTCGTTCCCGCTACTTGGGGATTCAG
.....................................................................((.((.(((..((((((((.((((.....(((((((......((((((((((.....((....)).....))))))).)))...))))))))))).))))).)))..))))).)).((((.......))))..................................................
....................................................................69.................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormDRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR040007(GSM532892)
G601T. (cervix)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR040015(GSM532900)
G623T. (cervix)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR343336SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR191409(GSM715519)
19genomic small RNA (size selected RNA from t. (breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040018(GSM532903)
G701N. (cervix)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR191419(GSM715529)
41genomic small RNA (size selected RNA from t. (breast)		TAX577580(Rovira)
total RNA. (breast)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040010(GSM532895)
G529N. (cervix)		SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR444065(SRX128913)
Sample 22cDNABarcode: AF-PP-335: ACG CTC TTC . (cell line)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532874(GSM532874)
G699T. (cervix)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040031(GSM532916)
G013T. (cervix)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR191570(GSM715680)
56genomic small RNA (size selected RNA from t. (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR191402(GSM715512)
43genomic small RNA (size selected RNA from t. (breast)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		TAX577743(Rovira)
total RNA. (breast)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR191486(GSM715596)
125genomic small RNA (size selected RNA from . (breast)		SRR037936(GSM510474)
293cand1. (cell line)		SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)		SRR040028(GSM532913)
G026N. (cervix)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
............................................................................................................GGAAGGAGAGAAGGGAAG............................................................................................................................ 182.000.00------------------------2.00-----------------------------------------------------------------------------------
...........................................................................................................................................................................................................ACCCCCGCTCCCCCAAGCGT........................... 201.000.00------------------------------1.00-----------------------------------------------------------------------------
................................................................................................GAAGGAGGCAGAGGAAGATC...................................................................................................................................... 201.000.00----------------------------------------------------------------1.00-------------------------------------------
..........................................................................................................................................................................................GAGCTCATTTCTCCTTATG............................................. 191.000.00--------------------------1.00---------------------------------------------------------------------------------
........................................................................................................................................................................................................GGGGGAGCGGGGGTTAA................................. 1711.001.00------------------------------------------------------------1.00-----------------------------------------------
............................................................................TGGTGGGGATAGAGGGGGGG.......................................................................................................................................................... 201.000.00----------------------------------------------------------------------1.00-------------------------------------
......................................................................................CTCCTTCCACCCCCTCT................................................................................................................................................... 1750.200.20-----------------------------------------------------------------------------------------------------------0.20