ID: uc003dya.2_intron_2_0_chr3_111432976_f.3p
GENE: (3)
chr3:111451266-111451515+


(10)
BREAST 		(3)
CELL-LINE 		(3)
CERVIX 		(2)
FIBROBLAST 		(13)
LIVER 		(1)
OTHER 		(1)
TESTES

Sense strand
GACCAGGCGGCTGAGGCCAGGGCAGACTCCCTCCTTCACATCTGTCAATATACCTGGCTGCAAGCAAGTTGCTGCCTGTGACCACAGTCTGCAGAGGCCAGAGAGAGCAGGAAAGGAAATGGAAAGGAACCTCACCTTCATGCTTGGGGAAAAGGAGAAACCTGTGTTAATGTGTCTTCCCAACATCCCACTCTCTTCAGCAATCGCTGGAACAGCCATGGGCCATCCCTGCTGAGTCAGGAAAGAAGCT
.................................................................................................................((((.((.((.(((...(((..(((((....))))).....)))...)))...)).))...))))........................................................................
............................................................................................................109..................................................................178......................................................................
SizePerfect hitTotal NormPerfect NormSRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		TAX577453(Rovira)
total RNA. (breast)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR191576(GSM715686)
86genomic small RNA (size selected RNA from t. (breast)		SRR189783SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR191611(GSM715721)
57genomic small RNA (size selected RNA from t. (breast)		SRR189785TAX577739(Rovira)
total RNA. (breast)		GSM532890(GSM532890)
G576T. (cervix)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191617(GSM715727)
104genomic small RNA (size selected RNA from . (breast)		SRR553576(SRX182782)
source: Testis. (testes)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577744(Rovira)
total RNA. (breast)		GSM532879(GSM532879)
G659N. (cervix)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR040024(GSM532909)
G613N. (cervix)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)
.................................................................................................................AGGAAATGGAAAGGAACCT......................................................................................................................19125.0025.007.009.002.004.00------2.00-----1.00------------------
.................................................................................................................AGGAAATGGAAAGGAACCTC.....................................................................................................................2019.009.002.001.00-1.00-1.00--1.00---1.00--------------------1.001.00
..........................................................................................GCAGAGGCCAGAGAGAGCAGGAA.........................................................................................................................................2314.004.00----4.00------------------------------
.ACCAGGCGGCTGAGGCCC.......................................................................................................................................................................................................................................183.000.00---------1.00--------------------1.001.00---
...........................................................................................................................................................................................................TCGCTGGAACAGCCATGGGCC..........................2112.002.00--2.00--------------------------------
.ACCAGGCGGCTGAGGCCCCTC....................................................................................................................................................................................................................................212.000.00-------------1.00-------1.00-------------
.ACCAGGCGGCTGAGGCCCCT.....................................................................................................................................................................................................................................202.000.00--------------1.00---------1.00----------
.ACCAGGCGGCTGAGGCCCC......................................................................................................................................................................................................................................192.000.001.00----------------------------1.00-----
...........................................................................................................CAGGAAAGGAAATGGAAAGG...........................................................................................................................2012.002.001.00-------1.00--------------------------
..............................................................................................AGGCCAGAGAGAGCAGGAAAGGA.....................................................................................................................................2312.002.00-----2.00-----------------------------
............................................................................................................AGGAAAGGAAATGGAAAGGAA.........................................................................................................................2112.002.00---1.00---1.00---------------------------
.ACCAGGCGGCTGAGGCCCTT.....................................................................................................................................................................................................................................202.000.002.00----------------------------------
..............................................................................................AGGCCAGAGAGAGCAGGAA.........................................................................................................................................1912.002.00------2.00----------------------------
.ACCAGGCGGCTGAGGCAGAA.....................................................................................................................................................................................................................................201.000.001.00----------------------------------
.......................................................................................................................................................AAGGAGAAACCTGTGTTAATGTG............................................................................2311.001.00---------------------------1.00-------
.................................................................................................................AGGAAATGGAAAGGAACCTCACC..................................................................................................................2311.001.00-------1.00---------------------------
..CCAGGCGGCTGAGGCAGGG.....................................................................................................................................................................................................................................191.000.00-----------------------1.00-----------
.................................................................................................................AGGAAATGGAAAGGAACCTCAC...................................................................................................................2211.001.00--1.00--------------------------------
.ACCAGGCGGCTGAGGCAA.......................................................................................................................................................................................................................................181.000.001.00----------------------------------
.................................................................................................................AGGAAATGGAAAGGAACCTCA....................................................................................................................2111.001.00--1.00--------------------------------
................................................................................................................AAGGAAATGGAAAGGAACCTC.....................................................................................................................2111.001.001.00----------------------------------
....................................................................................................................AAATGGAAAGGAACCTCACCTTCA..............................................................................................................2411.001.00-------------------1.00---------------
.ACCAGGCGGCTGAGGCCCCTA....................................................................................................................................................................................................................................211.000.001.00----------------------------------
...................................................ACCTGGCTGCAAGCAAGTT....................................................................................................................................................................................1911.001.00-----------1.00-----------------------
......................................................................................................................ATGGAAAGGAACCTCTTA..................................................................................................................181.000.00-----------------1.00-----------------
.ACCAGGCGGCTGAGGCAAT......................................................................................................................................................................................................................................191.000.00---------1.00-------------------------
........................................................................................................GAGCAGGAAAGGAAAGACT...............................................................................................................................191.000.00------------------1.00----------------
.ACCAGGCGGCTGAGGCCATTTT...................................................................................................................................................................................................................................221.000.00--------------------------1.00--------
.......................................................................................................................TGGAAAGGAACCTCACCTTCATG............................................................................................................2311.001.00-------1.00---------------------------
.ACCAGGCGGCTGAGGCCCCTT....................................................................................................................................................................................................................................211.000.001.00----------------------------------
.......................................................................................TCTGCAGAGGCCAGAGAGA................................................................................................................................................1911.001.00------1.00----------------------------
...................................................................................ACAGTCTGCAGAGGCCAGAGAGAGC..............................................................................................................................................2511.001.00--------------------------------1.00--
.................................................................................................................AGGAAATGGAAAGGAATCTC.....................................................................................................................201.000.00--1.00--------------------------------
................................................................................................GCCAGAGAGAGCAGGAAA........................................................................................................................................1811.001.00----------------------1.00------------
.............................................................................................................................................................................................ACTCTCTTCAGCAATACA...........................................181.000.00----------------------------1.00------
...CAGGCGGCTGAGGCCAGAG....................................................................................................................................................................................................................................191.000.00-------------------------1.00---------
.ACCAGGCGGCTGAGGCCCATT....................................................................................................................................................................................................................................211.000.001.00----------------------------------
..............................................................................................AGGCCAGAGAGAGCAGGA..........................................................................................................................................1820.500.50-----0.50-----------------------------
...............................................................................................................AAAGGAAATGGAAAGGAA.........................................................................................................................1880.250.250.12-----------0.12----------------------
..............................................................................................................GAAAGGAAATGGAAAGGAA.........................................................................................................................1950.200.20-----------0.20-----------------------

Antisense strand
GACCAGGCGGCTGAGGCCAGGGCAGACTCCCTCCTTCACATCTGTCAATATACCTGGCTGCAAGCAAGTTGCTGCCTGTGACCACAGTCTGCAGAGGCCAGAGAGAGCAGGAAAGGAAATGGAAAGGAACCTCACCTTCATGCTTGGGGAAAAGGAGAAACCTGTGTTAATGTGTCTTCCCAACATCCCACTCTCTTCAGCAATCGCTGGAACAGCCATGGGCCATCCCTGCTGAGTCAGGAAAGAAGCT
.................................................................................................................((((.((.((.(((...(((..(((((....))))).....)))...)))...)).))...))))........................................................................
............................................................................................................109..................................................................178......................................................................
SizePerfect hitTotal NormPerfect NormSRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		TAX577453(Rovira)
total RNA. (breast)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR191576(GSM715686)
86genomic small RNA (size selected RNA from t. (breast)		SRR189783SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR191611(GSM715721)
57genomic small RNA (size selected RNA from t. (breast)		SRR189785TAX577739(Rovira)
total RNA. (breast)		GSM532890(GSM532890)
G576T. (cervix)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191617(GSM715727)
104genomic small RNA (size selected RNA from . (breast)		SRR553576(SRX182782)
source: Testis. (testes)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577744(Rovira)
total RNA. (breast)		GSM532879(GSM532879)
G659N. (cervix)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR040024(GSM532909)
G613N. (cervix)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)
...............................................................................................................................................................................CTTCCCAACATCCCACCACC....................................................... 201.000.00--------------------1.00--------------
................CCAGGGCAGACTCCCATG........................................................................................................................................................................................................................ 181.000.00---------------1.00-------------------