ID: uc003dxb.3_intron_7_0_chr3_108279689_r.3p
GENE: (13)
chr3:108279639-108279888-


(1)
BRAIN 		(7)
BREAST 		(9)
CELL-LINE 		(3)
CERVIX 		(1)
HELA 		(1)
LIVER 		(1)
OTHER

Sense strand
AGGTTAGAAACAGAAAAGTGGGTGCTCTGGAAAATTCAGAATATTTCCCAAGACTTCATTTCATCATGGTCTCCAAGATTATTTGAAGACTTCTATTCAAAAAAAGGACCCATTCTTAAAAATTCCCTAATTCTGCACTAAGTCTGCCTTTTCTTCTATTTTCGTATAATTTTTTTTTCCTTTCTTTGACTCCCATTCAGACTTGGAGAAAGTATAGCAGCAAACAATGCCTATAGACAACAGGAAACAG
....................................................................((((.((((....)))).))))......(((((.((((((..........................(((.......))).........(((......))).........)))))).))))).............................................................
....................................................................69............................................................................................................................195.....................................................
SizePerfect hitTotal NormPerfect NormSRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR189787SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR343336SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189786SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR343337SRR040018(GSM532903)
G701N. (cervix)		SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR040019(GSM532904)
G701T. (cervix)		SRR040029(GSM532914)
G026T. (cervix)		SRR189782SRR189785SRR029128(GSM416757)
H520. (cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		TAX577738(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
.........................................................................CAAGATTATTTGAAGACTTTG............................................................................................................................................................2118.000.007.003.004.003.00------------1.00-------------
........................................................................CCAAGATTATTTGAAGACTTTG............................................................................................................................................................22115.001.006.005.003.001.00--------------------------
..........................................................................AAGATTATTTGAAGACTTTG............................................................................................................................................................2017.004.004.00-3.00---------------------------
......................................................................................................................................................................................................................TAGCAGCAAACAATGGCG..................186.000.00-----3.00-----3.00------------------
.........................................................................CAAGATTATTTGAAGACTTTGA...........................................................................................................................................................226.000.004.00-1.001.00--------------------------
........................................................................CCAAGATTATTTGAAGACTTTGAA..........................................................................................................................................................2415.001.00-3.002.00---------------------------
..........................................................................AAGATTATTTGAAGACTT..............................................................................................................................................................1814.004.00--2.002.00--------------------------
.........................................................................CAAGATTATTTGAAGACTTTGAA..........................................................................................................................................................234.000.00-3.00-1.00--------------------------
.........................................................................CAAGATTATTTGAAGACTTT.............................................................................................................................................................204.000.00-1.00-1.001.00---1.00---------------------
........................................................................................................................................................................ATTTTTTTTTCCTTTCTTTCTAA...........................................................233.000.00------2.00---------------------1.00-
........................................................................CCAAGATTATTTGAAGACTTT.............................................................................................................................................................2113.001.00-2.00-1.00--------------------------
........................................................................CCAAGATTATTTGAAGACT...............................................................................................................................................................1913.003.00---1.00---------2.00----------------
........................................................................CCAAGATTATTTGAAGACTTTGA...........................................................................................................................................................2313.001.001.00-1.001.00--------------------------
...........................................................................AGATTATTTGAAGACTTTG............................................................................................................................................................192.000.00--1.001.00--------------------------
......................................................................................................................................................................................................................TAGCAGCAAACAATGGTTT.................192.000.00--------------------1.00----1.00----
..........................................................................AAGATTATTTGAAGACTTT.............................................................................................................................................................1912.004.002.00-----------------------------
........................................................................CCAAGATTATTTGAAGACTTG.............................................................................................................................................................2112.001.00-1.001.00---------------------------
......................................................................................................................................................................................................................TAGCAGCAAACAATGGCGA.................192.000.00-----2.00------------------------
..........................................................................AAGATTATTTGAAGACTTTGA...........................................................................................................................................................2111.004.001.00-----------------------------
.....................................................................................................................................................................................................................ATAGCAGCAAACAATTATT..................191.000.00---------1.00--------------------
......................................................................................................................................................................................................................TAGCAGCAAACAATGGTT..................181.000.00--------------------------1.00---
...........................................................................AGATTATTTGAAGACTTTGT...........................................................................................................................................................201.000.001.00-----------------------------
......................................................................................................................................................................................................................TAGCAGCAAACAATGCTT..................181.000.00-------------------1.00----------
........................................................................................................................................................................ATTTTTTTTTCCTTTCTTCGC.............................................................211.000.00------1.00-----------------------
......................................................................................................................................................................................................................TAGCAGCAAACAATGGTTG.................191.000.00---------------1.00--------------
.........................................................................CAAGATTATTTGAAGACTTG.............................................................................................................................................................201.000.00-1.00----------------------------
.........................................................................CAAGATTATTTGAAGACTCTGA...........................................................................................................................................................221.000.001.00-----------------------------
.........................................................................................................................................................................TTTTTTTTTCCTTTCTTTGAGGGC.........................................................241.000.00----------1.00-------------------
......................................................................................................................................................................................................................TAGCAGCAAACAATGCCTTGT...............211.000.00------------------------1.00-----
......................................................................................................................................................................................................................TAGCAGCAAACAATGGGTT.................191.000.00-----1.00------------------------
......................................................................................................................................................................................................................TAGCAGCAAACAATGATTA.................191.000.00-------1.00----------------------
.........................................................................CAAGATTATTTGAAGACTTTGT...........................................................................................................................................................221.000.001.00-----------------------------
......................................................................................................................................................................................................................TAGCAGCAAACAATGCCGG.................191.000.00-------1.00----------------------
.........................................................................CAAGATTATTTGAAGACTTTGG...........................................................................................................................................................221.000.001.00-----------------------------
.........................................................................CAAGATTATTTGAAGACTTGA............................................................................................................................................................211.000.001.00-----------------------------
.........................................................................................................................................................................TTTTTTTTTCCTTTCTTGTCC............................................................211.000.00------------1.00-----------------
........................................................................CCAAGATTATTTGAAGACTTTGT...........................................................................................................................................................2311.001.00-1.00----------------------------
.......................................................................................................................................................................AATTTTTTTTTCCTTTCTTACT.............................................................221.000.00------1.00-----------------------
.........................................................................................................................................................................TTTTTTTTTCCTTTCTTTGGTC...........................................................221.000.00------------1.00-----------------
..........................................................................AAGATTATTTGAAGACTTTGT...........................................................................................................................................................2111.004.001.00-----------------------------
.....................................................................................................................................................................ATAATTTTTTTTTCCTTCC..................................................................191.000.00----------1.00-------------------
......................................................................................................................................................................................................................TAGCAGCAAACAATGGG...................171.000.00---------------------1.00--------
........................................................................CCAAGATTATTTGAAGACTT..............................................................................................................................................................2011.001.00----1.00-------------------------
......................................................................................................................................................................................................................TAGCAGCAAACAATGATTG.................191.000.00----------------------1.00-------
......................................................................................................................................................................................................................TAGCAGCAAACAATGACGC.................191.000.00-------1.00----------------------
.........................................................................CAAGATTATTTGAAGACTTTT............................................................................................................................................................211.000.00--------1.00---------------------
.....................................................................................................................................................................ATAATTTTTTTTTCCTTTCTTTTGCT...........................................................261.000.00----------1.00-------------------
............................................................................GATTATTTGAAGACTTTGAA..........................................................................................................................................................201.000.00--------1.00---------------------
......................................................................................................................................................................................................................TAGCAGCAAACAATGGATT.................191.000.00---------------------------1.00--
......................................................................................................................................................................................................................................CTATAGACAACAGGAAAC..1820.500.50-----------------------------0.50

Antisense strand
AGGTTAGAAACAGAAAAGTGGGTGCTCTGGAAAATTCAGAATATTTCCCAAGACTTCATTTCATCATGGTCTCCAAGATTATTTGAAGACTTCTATTCAAAAAAAGGACCCATTCTTAAAAATTCCCTAATTCTGCACTAAGTCTGCCTTTTCTTCTATTTTCGTATAATTTTTTTTTCCTTTCTTTGACTCCCATTCAGACTTGGAGAAAGTATAGCAGCAAACAATGCCTATAGACAACAGGAAACAG
....................................................................((((.((((....)))).))))......(((((.((((((..........................(((.......))).........(((......))).........)))))).))))).............................................................
....................................................................69............................................................................................................................195.....................................................
SizePerfect hitTotal NormPerfect NormSRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR189787SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR343336SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189786SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR343337SRR040018(GSM532903)
G701N. (cervix)		SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR040019(GSM532904)
G701T. (cervix)		SRR040029(GSM532914)
G026T. (cervix)		SRR189782SRR189785SRR029128(GSM416757)
H520. (cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		TAX577738(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
........................................................................CCAAGATTATTTGAAGACTTT............................................................................................................................................................. 2114.000.00----4.00-------------------------
..............................................................................................................................................................TTTTCGTATAATTTTCCAA......................................................................... 194.000.00---------2.00----2.00---------------
........................................................................CCAAGATTATTTGAAGAT................................................................................................................................................................ 182.000.00----1.00------------------1.00------
........................................................................CCAAGATTATTTGAAGACTTTT............................................................................................................................................................ 2212.000.00----2.00-------------------------
...........................................................TTCATCATGGTCTCCCAGC............................................................................................................................................................................ 191.000.00------------------1.00-----------
............................................................................................................................................................................................................................CAAACAATGCCTATAGT............. 171.000.00-----------------1.00------------