ID: uc003dwa.2_intron_2_0_chr3_105397416_r.3p
GENE: (1)
chr3:105397366-105397615-


(1)
AGO2.ip
(1)
BRAIN
(38)
BREAST
(6)
CELL-LINE
(20)
CERVIX
(2)
HEART
(1)
LIVER
(3)
OTHER
(8)
SKIN

Sense strand
GTGTGCATGTGTGTGTTTCTCTCCAGACTCTCCCACAAAATAATTAGATCCCATTATCAAAGTTGGTGAACTGCTGGATAAACCCTGCGAGTGAAATTCTTTATAAGCAGCAAGAGAAAATCAATTATTACTTTTGTTAGATGCTGTGTATTTTGATTAATGAAGTTCTGCTGCTGATATCGACCTTTCTTTAAATGCAGGTGAAGATGCTTTTGATGCCCTCCCTCCATCTCTCCCACCTCCCCCACCT
......................................................................................................................((((((....(((....((.....))...)))..))))))............((((...((..((....))..))...))))..................................................
......................................................................................................................119..............................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR040036(GSM532921)
G243N. (cervix)
SRR040038(GSM532923)
G531N. (cervix)
SRR040018(GSM532903)
G701N. (cervix)
SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR191408(GSM715518)
88genomic small RNA (size selected RNA from t. (breast)
SRR040012(GSM532897)
G648N. (cervix)
SRR191573(GSM715683)
68genomic small RNA (size selected RNA from t. (breast)
GSM532871(GSM532871)
G652N. (cervix)
SRR191404(GSM715514)
47genomic small RNA (size selected RNA from t. (breast)
SRR040016(GSM532901)
G645N. (cervix)
GSM532880(GSM532880)
G659T. (cervix)
SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
SRR040039(GSM532924)
G531T. (cervix)
SRR191574(GSM715684)
78genomic small RNA (size selected RNA from t. (breast)
GSM532877(GSM532877)
G691N. (cervix)
GSM532883(GSM532883)
G871N. (cervix)
SRR037937(GSM510475)
293cand2. (cell line)
SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
SRR191578(GSM715688)
100genomic small RNA (size selected RNA from . (breast)
SRR040022(GSM532907)
G575N. (cervix)
SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
TAX577744(Rovira)
total RNA. (breast)
GSM532879(GSM532879)
G659N. (cervix)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR040024(GSM532909)
G613N. (cervix)
TAX577745(Rovira)
total RNA. (breast)
SRR191410(GSM715520)
20genomic small RNA (size selected RNA from t. (breast)
SRR191409(GSM715519)
19genomic small RNA (size selected RNA from t. (breast)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191396(GSM715506)
29genomic small RNA (size selected RNA from t. (breast)
SRR189784SRR040040(GSM532925)
G612N. (cervix)
SRR191397(GSM715507)
30genomic small RNA (size selected RNA from t. (breast)
GSM532876(GSM532876)
G547T. (cervix)
SRR191469(GSM715579)
117genomic small RNA (size selected RNA from . (breast)
SRR191575(GSM715685)
85genomic small RNA (size selected RNA from t. (breast)
SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)
SRR191568(GSM715678)
51genomic small RNA (size selected RNA from t. (breast)
TAX577746(Rovira)
total RNA. (breast)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
SRR040037(GSM532922)
G243T. (cervix)
SRR191576(GSM715686)
86genomic small RNA (size selected RNA from t. (breast)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)
SRR191581(GSM715691)
104genomic small RNA (size selected RNA from . (breast)
SRR191482(GSM715592)
5genomic small RNA (size selected RNA from to. (breast)
SRR191489(GSM715599)
147genomic small RNA (size selected RNA from . (breast)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189782SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR040008(GSM532893)
G727N. (cervix)
SRR191433(GSM715543)
170genomic small RNA (size selected RNA from . (breast)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR191418(GSM715528)
40genomic small RNA (size selected RNA from t. (breast)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)
SRR191411(GSM715521)
21genomic small RNA (size selected RNA from t. (breast)
GSM532882(GSM532882)
G696T. (cervix)
SRR191401(GSM715511)
38genomic small RNA (size selected RNA from t. (breast)
SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)
SRR191448(GSM715558)
143genomic small RNA (size selected RNA from . (breast)
TAX577738(Rovira)
total RNA. (breast)
SRR040035(GSM532920)
G001T. (cervix)
SRR191473(GSM715583)
121genomic small RNA (size selected RNA from . (breast)
SRR191563(GSM715673)
83genomic small RNA (size selected RNA from t. (breast)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
GSM532885(GSM532885)
G850N. (cervix)
SRR191497(GSM715607)
17genomic small RNA (size selected RNA from t. (breast)
TAX577743(Rovira)
total RNA. (breast)
SRR191553(GSM715663)
96genomic small RNA (size selected RNA from t. (breast)
SRR191479(GSM715589)
31genomic small RNA (size selected RNA from t. (breast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
...........................................................................................................................ATTATTACTTTTGTTACGCG...........................................................................................................2064.000.00--2.00-2.003.004.003.003.002.003.001.00-2.001.001.001.00-1.001.002.00--1.002.001.002.001.001.00--1.00--1.001.001.00-1.001.00-1.00----1.001.00-1.00----1.001.001.00-1.00--1.001.001.001.00-1.00-1.001.00---1.001.001.00---
..........................................................................................................................AATTATTACTTTTGTTACGCG...........................................................................................................2138.000.0014.007.003.00---------3.00------1.00--1.00-------1.00--1.00---1.00-----1.001.00---1.00------------------1.00---1.001.00------
...........................................................................................................................ATTATTACTTTTGTTACTCG...........................................................................................................207.000.00-------1.001.00--1.00--1.001.00--------------------------------------------1.00----1.00-------------
..........................................................................................................................AATTATTACTTTTGTTACTCG...........................................................................................................213.000.001.002.00-----------------------------------------------------------------------------
...........................................................................................................................ATTATTACTTTTGTTACGCA...........................................................................................................202.000.00-----1.00------------1.00------------------------------------------------------------
.....................................................................................................................................................................................GACCTTTCTTTAAATGCAG..................................................1911.001.00----------------------------------------------------------------------1.00--------
..................................................................................................................................................................................................................TTTTGATGCCCTCCCTCCA.....................1911.001.00-----------------------------1.00-------------------------------------------------
...........................................................................................................................ATTATTACTTTTGTTACGA............................................................................................................191.000.00---------1.00---------------------------------------------------------------------
...........................................................................................................................ATTATTACTTTTGTTATGCG...........................................................................................................201.000.00----1.00--------------------------------------------------------------------------
..........................................................................................................................AATTATTACTTTTGTTACGAG...........................................................................................................211.000.00-1.00-----------------------------------------------------------------------------
...........................................................................................................................ATTATTACTTTTGTTACT.............................................................................................................181.000.00-----------1.00-------------------------------------------------------------------
..........................................................................................................................AATTATTACTTTTGTTATGTG...........................................................................................................211.000.00-------------------------1.00-----------------------------------------------------
...........................................................................................................................ATTATTACTTTTGTTAAG.............................................................................................................181.000.00----1.00--------------------------------------------------------------------------
..........................................................................................................................AATTATTACTTTTGTTAGTCG...........................................................................................................211.000.00----------------------1.00--------------------------------------------------------
....................................................................................................................................................................................................................TTGATGCCCTCCCTCCATCTCTCCC.............2511.001.00----------------------------------------------------1.00--------------------------
...........................................................................................................................ATTATTACTTTTGTTACTAG...........................................................................................................201.000.00----------------------------------------1.00--------------------------------------
..........................................................................................................................AATTATTACTTTTGTTAAGCG...........................................................................................................211.000.00-1.00-----------------------------------------------------------------------------
..........................................................................................................................AATTATTACTTTTGTTATGCG...........................................................................................................211.000.00------------------------------------------1.00------------------------------------
.............................................................................................................................................TGCTGTGTATTTTGATTTCCC........................................................................................211.000.00----------------------------------------------------------------------------1.00--
........................AGACTCTCCCACAAAAT.................................................................................................................................................................................................................1711.001.00--------------------------------------------------1.00----------------------------
...........................................................................................................................ATTATTACTTTTGTTAAGCG...........................................................................................................201.000.00----1.00--------------------------------------------------------------------------
..........................................................................................................................AATTATTACTTTTGTGTCG.............................................................................................................191.000.00--1.00----------------------------------------------------------------------------
..........................................................................................................................AATTATTACTTTTGTTACCCC...........................................................................................................211.000.00-----1.00-------------------------------------------------------------------------
..............................................................................................................................ATTACTTTTGTTAGACAAT.........................................................................................................191.000.00-----------------------------------------------------1.00-------------------------
............................................................................................................................TTATTACTTTTGTTACGCG...........................................................................................................191.000.00---------------------------------------------1.00---------------------------------
............................................................................................................................TTATTACTTTTGTTACACG...........................................................................................................191.000.00-----------------------1.00-------------------------------------------------------
..........................................................................................................................................AGATGCTGTGTATTTTGA..............................................................................................1820.500.50-----------------------------------------------------------------------------0.50-

Antisense strand
GTGTGCATGTGTGTGTTTCTCTCCAGACTCTCCCACAAAATAATTAGATCCCATTATCAAAGTTGGTGAACTGCTGGATAAACCCTGCGAGTGAAATTCTTTATAAGCAGCAAGAGAAAATCAATTATTACTTTTGTTAGATGCTGTGTATTTTGATTAATGAAGTTCTGCTGCTGATATCGACCTTTCTTTAAATGCAGGTGAAGATGCTTTTGATGCCCTCCCTCCATCTCTCCCACCTCCCCCACCT
......................................................................................................................((((((....(((....((.....))...)))..))))))............((((...((..((....))..))...))))..................................................
......................................................................................................................119..............................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR040036(GSM532921)
G243N. (cervix)
SRR040038(GSM532923)
G531N. (cervix)
SRR040018(GSM532903)
G701N. (cervix)
SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR191408(GSM715518)
88genomic small RNA (size selected RNA from t. (breast)
SRR040012(GSM532897)
G648N. (cervix)
SRR191573(GSM715683)
68genomic small RNA (size selected RNA from t. (breast)
GSM532871(GSM532871)
G652N. (cervix)
SRR191404(GSM715514)
47genomic small RNA (size selected RNA from t. (breast)
SRR040016(GSM532901)
G645N. (cervix)
GSM532880(GSM532880)
G659T. (cervix)
SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
SRR040039(GSM532924)
G531T. (cervix)
SRR191574(GSM715684)
78genomic small RNA (size selected RNA from t. (breast)
GSM532877(GSM532877)
G691N. (cervix)
GSM532883(GSM532883)
G871N. (cervix)
SRR037937(GSM510475)
293cand2. (cell line)
SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)
SRR191578(GSM715688)
100genomic small RNA (size selected RNA from . (breast)
SRR040022(GSM532907)
G575N. (cervix)
SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
TAX577744(Rovira)
total RNA. (breast)
GSM532879(GSM532879)
G659N. (cervix)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR040024(GSM532909)
G613N. (cervix)
TAX577745(Rovira)
total RNA. (breast)
SRR191410(GSM715520)
20genomic small RNA (size selected RNA from t. (breast)
SRR191409(GSM715519)
19genomic small RNA (size selected RNA from t. (breast)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191396(GSM715506)
29genomic small RNA (size selected RNA from t. (breast)
SRR189784SRR040040(GSM532925)
G612N. (cervix)
SRR191397(GSM715507)
30genomic small RNA (size selected RNA from t. (breast)
GSM532876(GSM532876)
G547T. (cervix)
SRR191469(GSM715579)
117genomic small RNA (size selected RNA from . (breast)
SRR191575(GSM715685)
85genomic small RNA (size selected RNA from t. (breast)
SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)
SRR191568(GSM715678)
51genomic small RNA (size selected RNA from t. (breast)
TAX577746(Rovira)
total RNA. (breast)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
SRR040037(GSM532922)
G243T. (cervix)
SRR191576(GSM715686)
86genomic small RNA (size selected RNA from t. (breast)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)
SRR191581(GSM715691)
104genomic small RNA (size selected RNA from . (breast)
SRR191482(GSM715592)
5genomic small RNA (size selected RNA from to. (breast)
SRR191489(GSM715599)
147genomic small RNA (size selected RNA from . (breast)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189782SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR040008(GSM532893)
G727N. (cervix)
SRR191433(GSM715543)
170genomic small RNA (size selected RNA from . (breast)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR191418(GSM715528)
40genomic small RNA (size selected RNA from t. (breast)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191456(GSM715566)
182genomic small RNA (size selected RNA from . (breast)
SRR191411(GSM715521)
21genomic small RNA (size selected RNA from t. (breast)
GSM532882(GSM532882)
G696T. (cervix)
SRR191401(GSM715511)
38genomic small RNA (size selected RNA from t. (breast)
SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)
SRR191448(GSM715558)
143genomic small RNA (size selected RNA from . (breast)
TAX577738(Rovira)
total RNA. (breast)
SRR040035(GSM532920)
G001T. (cervix)
SRR191473(GSM715583)
121genomic small RNA (size selected RNA from . (breast)
SRR191563(GSM715673)
83genomic small RNA (size selected RNA from t. (breast)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
GSM532885(GSM532885)
G850N. (cervix)
SRR191497(GSM715607)
17genomic small RNA (size selected RNA from t. (breast)
TAX577743(Rovira)
total RNA. (breast)
SRR191553(GSM715663)
96genomic small RNA (size selected RNA from t. (breast)
SRR191479(GSM715589)
31genomic small RNA (size selected RNA from t. (breast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
...............................CCCACAAAATAATTAGCTTA....................................................................................................................................................................................................... 209.000.00---5.00-------------2.00---2.00---------------------------------------------------------
.................................................................................................TCTTTATAAGCAGCAACTCG..................................................................................................................................... 201.000.00----------------1.00--------------------------------------------------------------
....................................................................................................................................................................................CGACCTTTCTTTAAAGGT.................................................... 181.000.00---------------------------------------------------------1.00---------------------
.............................................................................................................................................................................................TTTAAATGCAGGTGAAACG.......................................... 191.000.00--------------------------------1.00----------------------------------------------
...........................................................................................................................................................ATTAATGAAGTTCTGCTGTGA.......................................................................... 211.000.00---------------------------------------------------1.00---------------------------
.............................CTCCCACAAAATAATGGTG.......................................................................................................................................................................................................... 191.000.00-----------------------------------------------------------1.00-------------------
..............................................................................................................................................................AGCAGCAGAACTTCATT........................................................................... 1740.250.25------------------------------------------------------------------------------0.25