ID: uc003due.2_intron_1_0_chr3_100432714_f.3p
GENE: (2)
chr3:100438619-100438868+


(2)
BRAIN 		(1)
BREAST 		(9)
CELL-LINE 		(1)
CERVIX 		(4)
HEART 		(1)
HELA 		(4)
LIVER 		(1)
OTHER 		(5)
SKIN 		(1)
XRN.ip

Sense strand
AGTAATAAGCAAAATTGATTTAGTATATTTTTGAACAAATGCATTTTTGCTAGACCTTTAAAGTTTAAGGTTTCTATGGGAGAGTCCAACTATGTTCTACAATCTACATTTTGGATTTTTAATTTTTACTAGTTTACTGCTTATACAAATCTGAAAATTTAAAAAATTAAAAAACAACCTTTTTTTTTTTTAAATTCCAGATGGAGATCTTATAACAATTTTTGATAGTTCTGACCTTTCCTTTGCAATT
.........................................................................................................................((((.((..(((.....)))..)).))))(((..(((((((((((..((((.......))))..))))))))))).)))..................................................
..................................................................................................................115..................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR037936(GSM510474)
293cand1. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343337SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189785SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR040022(GSM532907)
G575N. (cervix)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
..................................................................................................................................................................................CTTTTTTTTTTTTAAATTCAATC.................................................2328.000.0015.0012.00-1.00---------------------------
..................................................................................................................................................................................CTTTTTTTTTTTTAAATTCAAT..................................................2226.000.0016.008.002.00----------------------------
................................................................................................................................................................................ACCTTTTTTTTTTTTAAATTTATG..................................................2413.000.005.001.003.004.00---------------------------
..............................................................................................................................................................................CAACCTTTTTTTTTTTTATG........................................................207.000.002.004.001.00----------------------------
..............................................................................................................................................................................CAACCTTTTTTTTTTTTAAAAG......................................................225.000.001.003.001.00----------------------------
..............................................................................................................................................................................CAACCTTTTTTTTTTTACTT........................................................204.000.00---2.002.00--------------------------
........................................................................................................................................................................................................................AATTTTTGATAGTTCTGACC..............2013.003.00-----3.00-------------------------
...............TGATTTAGTATATTTTATAT.......................................................................................................................................................................................................................203.000.00---------2.00----1.00----------------
..............................................................................................................................................................................CAACCTTTTTTTTTTTTATTT.......................................................213.000.001.001.001.00----------------------------
.........................................................................................................................................................................................................................ATTTTTGATAGTTCTGACC..............1912.002.00------1.00---1.00--------------------
.................................................................................................................................................................................CCTTTTTTTTTTTTAAATATAG...................................................222.000.00-1.001.00----------------------------
.............................................................................................................................................................................ACAACCTTTTTTTTTTTTCTG........................................................212.000.00-1.00-1.00---------------------------
........................................................................................................................................................................................................ATGGAGATCTTATAACAATTTTTGATA.......................2712.002.00--------2.00----------------------
..................................................................................................................................................................................CTTTTTTTTTTTTAAATTCCAAG.................................................231.000.00-1.00-----------------------------
.................................................................................................................................................................................................................TTATAACAATTTTTGATAGTTCTGACC..............2711.001.00---------------------------1.00---
........................................................................................................................................................................................................ATGGAGATCTTATAACAATCTT............................221.000.00-----------------1.00-------------
.............................................................................................................................................................................ACAACCTTTTTTTTTTTTAATATG.....................................................241.000.001.00------------------------------
..................................................................................................................................................................................CTTTTTTTTTTTTAAATTCTATC.................................................231.000.00-1.00-----------------------------
..................................................................................................................................................................................CTTTTTTTTTTTTAAATTCAATT.................................................231.000.001.00------------------------------
..................................................................................................................................................................................CTTTTTTTTTTTTAAATTCAACT.................................................231.000.001.00------------------------------
...............TGATTTAGTATATTTTCTC........................................................................................................................................................................................................................191.000.00--------------------1.00----------
...............TGATTTAGTATATTTAAT.........................................................................................................................................................................................................................181.000.00-------------------1.00-----------
..............................................................................................................................................................................CAACCTTTTTTTTTTTTATAAG......................................................221.000.001.00------------------------------
..............................................................................................................................................................................CAACCTTTTTTTTTTTTCCTT.......................................................211.000.00-1.00-----------------------------
....................................................................................................................................................................................................................TAACAATTTTTGATAGTTT...................191.000.00----1.00--------------------------
.............................................................................................................................................................................ACAACCTTTTTTTTTTTTCGA........................................................211.000.00------------1.00------------------
..............................................................................................................................................................................CAACCTTTTTTTTTTTTAAAAT......................................................221.000.00-1.00-----------------------------
..............................................................................................................................................................................CAACCTTTTTTTTTTTTCAAG.......................................................211.000.00-1.00-----------------------------
...............TGATTTAGTATATTTTATAG.......................................................................................................................................................................................................................201.000.00----------------------1.00--------
.......................................................................................................................TAATTTTTACTAGTTGTC.................................................................................................................181.000.00----1.00--------------------------
.............................................................................................................................................................................ACAACCTTTTTTTTTTTTAAG........................................................211.000.001.00------------------------------
.........................................................................................................................................................................................................TGGAGATCTTATAACAATTT.............................2011.001.00-----1.00-------------------------
..............................................................................................................................................................................CAACCTTTTTTTTTTTTATAG.......................................................211.000.00-1.00-----------------------------
...............TGATTTAGTATATTTTCTCT.......................................................................................................................................................................................................................201.000.00--------------1.00----------------
..................................................................................................................................................................................CTTTTTTTTTTTTAAATTCTAG..................................................221.000.00-1.00-----------------------------
..............................................................................................................................................................................CAACCTTTTTTTTTTTTAAACCCG....................................................241.000.001.00------------------------------
...............................................................................................................................................................................AACCTTTTTTTTTTTTACAT.......................................................201.000.001.00------------------------------
......................................................................................................................................................................................................................ACAATTTTTGATAGTTCTGACC..............2211.001.00----------1.00--------------------
................................................................................................................................................................................ACCTTTTTTTTTTTTAAACG......................................................201.000.00-1.00-----------------------------
.........................................................................................................................................................................................................................ATTTTTGATAGTTCTGACCTTT...........2211.001.00----------------------------1.00--
.............................................................................................................................................................................ACAACCTTTTTTTTTTTTGTTG.......................................................221.000.001.00------------------------------
..................................................................................................................................................................................CTTTTTTTTTTTTAAATTCCAT..................................................221.000.00-1.00-----------------------------
................................................................................................................................................................................ACCTTTTTTTTTTTTAAAGCGG....................................................221.000.00------------1.00------------------
................................................................................................................................................................................ACCTTTTTTTTTTTTAAATTAAAG..................................................241.000.001.00------------------------------
.........................................................................................................................................................................................................................ATTTTTGATAGTTCTGACCT.............2011.001.00-------------1.00-----------------
..................................................................................................................................................................................CTTTTTTTTTTTTAAATTCCACCG................................................241.000.00---1.00---------------------------
...............TGATTTAGTATATTTTTGAACAAATGCAT..............................................................................................................................................................................................................2911.001.00------1.00------------------------
..................................................................................................................................................................................CTTTTTTTTTTTTAAATTCCAG..................................................2211.001.00-1.00-----------------------------
.................................................................................................................................................................................................................................TAGTTCTGACCTTTCCTTT......1911.001.00----------------1.00--------------
..................................................................................................................................................................................CTTTTTTTTTTTTAAATTCAATA.................................................231.000.001.00------------------------------
...............................................................................................................................................................................AACCTTTTTTTTTTTTAAATCAAT...................................................241.000.00-1.00-----------------------------
.........................................................................................................................................................................................................................ATTTTTGATAGTTCTGATA..............191.000.00------1.00------------------------
.................................................................................................................................................................................................................................TAGTTCTGACCTTTCCTTTGCA...2211.001.00---------------------1.00---------
..............................................................................................................................................................................CAACCTTTTTTTTTTTTATAAA......................................................221.000.00-1.00-----------------------------
.......................................................................................................................................................................................................GATGGAGATCTTATAACAATT..............................2111.001.00-------1.00-----------------------
..............................................................................................................................................................................CAACCTTTTTTTTTTTATCT........................................................201.000.00----1.00--------------------------
..................................................................................................................................................................................CTTTTTTTTTTTTAAATTCCATTTG...............................................251.000.001.00------------------------------
..............................................................................................................................................................................CAACCTTTTTTTTTTTATAG........................................................201.000.00-1.00-----------------------------
..............................................................................................................................................................................CAACCTTTTTTTTTTTATG.........................................................191.000.00-1.00-----------------------------
..................................................................................................................................................................................CTTTTTTTTTTTTAAATTCAACC.................................................231.000.001.00------------------------------
..............................................................................................................................................................................CAACCTTTTTTTTTTTTCTG........................................................201.000.00--1.00----------------------------
.........................................................................................................................................................................................................................ATTTTTGATAGTTCTGACCTTTCCTTTGC....2911.001.00-------------1.00-----------------
...............................................................................................................................................................................AACCTTTTTTTTTTTTACCAG......................................................211.000.00-1.00-----------------------------
...............................................................................................................................................................................AACCTTTTTTTTTTTTATCAG......................................................211.000.001.00------------------------------
................................................................................................................................................................................ACCTTTTTTTTTTTTAAACCTA....................................................221.000.00-1.00-----------------------------
................GATTTAGTATATTTTTGAACTCTG..................................................................................................................................................................................................................241.000.00------------------1.00------------
.............................................................................................................................................................................ACAACCTTTTTTTTTTTTGTG........................................................211.000.001.00------------------------------
................................................................................................................................................................................ACCTTTTTTTTTTTTAAAGGAC....................................................221.000.00-------------------------1.00-----
......................................................................................................................................................................................................................ACAATTTTTGATAGTTCTGACCT.............2311.001.00-------1.00-----------------------
..............................................................................................................................................................................CAACCTTTTTTTTTTTGTAG........................................................201.000.00-1.00-----------------------------
...........................................................................................................................................................................................................................TTTTGATAGTTCTGACC..............1720.500.50-----0.50-------------------------
............................................................................................................................................................................................................................TTTGATAGTTCTGACC..............1620.500.50-----0.50-------------------------
.............................................................................................................................................................................................................................TTGATAGTTCTGACC..............1520.500.50-----0.50-------------------------
.......................................................................................................................................................................................................................................TGACCTTTCCTTTGCA...1660.170.17-------0.17-----------------------
...................................................................................................................................................................................TTTTTTTTTTTTAAATTCCAG..................................................2170.140.140.14------------------------------

Antisense strand
AGTAATAAGCAAAATTGATTTAGTATATTTTTGAACAAATGCATTTTTGCTAGACCTTTAAAGTTTAAGGTTTCTATGGGAGAGTCCAACTATGTTCTACAATCTACATTTTGGATTTTTAATTTTTACTAGTTTACTGCTTATACAAATCTGAAAATTTAAAAAATTAAAAAACAACCTTTTTTTTTTTTAAATTCCAGATGGAGATCTTATAACAATTTTTGATAGTTCTGACCTTTCCTTTGCAATT
.........................................................................................................................((((.((..(((.....)))..)).))))(((..(((((((((((..((((.......))))..))))))))))).)))..................................................
..................................................................................................................115..................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR037936(GSM510474)
293cand1. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343337SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189785SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR040022(GSM532907)
G575N. (cervix)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
..........................................................................................................................................................................................................................................CCTTTCCTTTGCAATTGAA 192.000.00---------------2.00---------------
............................................................................................TGTTCTACAATCTACCTG............................................................................................................................................ 182.000.00-----------------------1.00--1.00----
..........................................ATTTTTGCTAGACCTTTGT............................................................................................................................................................................................. 191.000.00-----------1.00-------------------
.......................................................................................................................................................................TAAAAAACAACCTTTTTGCT............................................................... 201.000.00----1.00--------------------------
........................................................................................................................................................GAAAATTTAAAAAATTAACA.............................................................................. 201.000.00------------------------1.00------
..........................................ATTTTTGCTAGACCTTTA.............................................................................................................................................................................................. 181.000.00-----------1.00-------------------
...................................................................................................................................................................................TCTGGAATTTAAAAAAAAAAAA................................................. 2250.200.20----------------0.20--------------
...................................................................................................................................................................................CTGGAATTTAAAAAAAAAAAA.................................................. 2170.140.14-----------------------------0.14-
....................................................................................................................................................................................CTGGAATTTAAAAAAAAAAA.................................................. 2080.120.12------------------------------0.12