ID: uc003dtd.2_intron_11_0_chr3_98541586_r.5p
GENE: (4)
chr3:98543959-98544208-


(1)
BREAST
(9)
CELL-LINE
(1)
CERVIX
(4)
HEART
(1)
HELA
(2)
LIVER
(1)
OTHER

Sense strand
CTAATTACTTGTTTGGACACTGCATCCAATTTTTTGGAACCTGAGTTCAGGTATGATTATATTTGTGACTTTTTTTTTTTTTTTTGCTTAAATGTTACTTTTCATTCACTTCTTCATTTTCATTCTGTATACTCTTAGGGTTAATGTATATTGTGTGATACATATCATTGTTCCGAGACTTCAATAAATTAGAGCTTACTTAAAGCATAAAGCCATTTAGTTGCATGTTTACATTTTGCTTTTATTGTAG
................................................................(((((........................)))))........................................................................................................................................................
...............................................................64...............................................................129.......................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR189782SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR040029(GSM532914)
G026T. (cervix)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
....................................................................CTTTTTTTTTTTTTTTTGCTTGGCG.............................................................................................................................................................2521.000.0016.004.00------1.00-----------
...............................................................TGTGACTTTTTTTTTTTTTTCATC...................................................................................................................................................................246.000.001.005.00------------------
...................................................................ACTTTTTTTTTTTTTTTTGCTTTTTC.............................................................................................................................................................264.000.001.003.00------------------
...............................................................TGTGACTTTTTTTTTTTTTTTCATC..................................................................................................................................................................253.000.00-3.00------------------
...............................................................TGTGACTTTTTTTTTTTTTTTTATC..................................................................................................................................................................253.000.002.001.00------------------
...............................................................TGTGACTTTTTTTTTTTTTTTTCATC.................................................................................................................................................................262.000.00-2.00------------------
...............................................................................................TACTTTTCATTCACTTCTTCATTTTCATTCCG...........................................................................................................................322.000.00---1.00-----1.00----------
.............................................................TTTGTGACTTTTTTTTTTTCTTG......................................................................................................................................................................232.000.00-2.00------------------
..............................................................TTGTGACTTTTTTTTTTTTTTTAATG..................................................................................................................................................................262.000.002.00-------------------
.............................................................TTTGTGACTTTTTTTTTTTAGG.......................................................................................................................................................................222.000.00-2.00------------------
...........................................................TATTTGTGACTTTTTTTTTTTTTTTGG....................................................................................................................................................................272.000.001.001.00------------------
...............................................................TGTGACTTTTTTTTTTTATCA......................................................................................................................................................................212.000.001.001.00------------------
...............................................................TGTGACTTTTTTTTTTTTTTTGGG...................................................................................................................................................................242.000.00-2.00------------------
............................................................ATTTGTGACTTTTTTTTTTTTTTGG.....................................................................................................................................................................252.000.00-2.00------------------
...................................................................ACTTTTTTTTTTTTTTTTGCCAAG...............................................................................................................................................................242.000.00----2.00---------------
.............................................................TTTGTGACTTTTTTTTTTTTTTTTG....................................................................................................................................................................2551.201.200.800.40------------------
...............................................................TGTGACTTTTTTTTTTTTTTTTCGAG.................................................................................................................................................................261.000.001.00-------------------
................ACACTGCATCCAATTTTTTGGAACCT................................................................................................................................................................................................................2611.001.00-------1.00------------
....................................................................CTTTTTTTTTTTTTTTTGCTTGGCC.............................................................................................................................................................251.000.001.00-------------------
...................................................................ACTTTTTTTTTTTTTTTTGCTACGC..............................................................................................................................................................251.000.00-1.00------------------
.TAATTACTTGTTTGGACAC......................................................................................................................................................................................................................................1911.001.00--1.00-----------------
...............................................................TGTGACTTTTTTTTTTTTTTTGATA..................................................................................................................................................................251.000.001.00-------------------
....................................................................CTTTTTTTTTTTTTTTTGCTTCCTA.............................................................................................................................................................251.000.00---1.00----------------
..........GTTTGGACACTGCATCCAATTTTTTGGAACC.................................................................................................................................................................................................................3111.001.00-----1.00--------------
.............TGGACACTGCATCCAATTTTT........................................................................................................................................................................................................................2111.001.00--1.00-----------------
...............................................................TGTGACTTTTTTTTTTTTTTTTACC..................................................................................................................................................................251.000.00-1.00------------------
...............................................................TGTGACTTTTTTTTTTTTTTTTGAAG.................................................................................................................................................................261.000.001.00-------------------
............................................................ATTTGTGACTTTTTTTTTTTTTTCTTT...................................................................................................................................................................271.000.00-1.00------------------
..............................................................TTGTGACTTTTTTTTTTTTTAATG....................................................................................................................................................................241.000.00-1.00------------------
...........................AATTTTTTGGAACCTGAGTTCAGTA......................................................................................................................................................................................................251.000.00---------------1.00----
...ATTACTTGTTTGGACACTGCA..................................................................................................................................................................................................................................2111.001.00--1.00-----------------
...................................................................ACTTTTTTTTTTTTTTTTGCTCGG...............................................................................................................................................................241.000.001.00-------------------
...................................................................ACTTTTTTTTTTTTTTTTGCTTGTGG.............................................................................................................................................................261.000.001.00-------------------
...............................................................TGTGACTTTTTTTTTTTTTTACCA...................................................................................................................................................................241.000.00-1.00------------------
.............TGGACACTGCATCCAATTTT.........................................................................................................................................................................................................................2011.001.00--1.00-----------------
...............................................................TGTGACTTTTTTTTTTTCTG.......................................................................................................................................................................201.000.00-1.00------------------
.........TGTTTGGACACTGCATCC...............................................................................................................................................................................................................................1811.001.00-----1.00--------------
.TAATTACTTGTTTGGACACTGCATC................................................................................................................................................................................................................................2511.001.00------------------1.00-
...................................................................ACTTTTTTTTTTTTTTTTGCCCGG...............................................................................................................................................................241.000.00-1.00------------------
...............................................................TGTGACTTTTTTTTTTTTTTTTCG...................................................................................................................................................................241.000.001.00-------------------
..........................................................................................................CACTTCTTCATTTTCTTAG.............................................................................................................................191.000.00---1.00----------------
...................................................................ACTTTTTTTTTTTTTTTTGCTTGGGG.............................................................................................................................................................261.000.001.00-------------------
............................................................................TTTTTTTTTGCTTAAATTTCT.........................................................................................................................................................211.000.00----1.00---------------
........TTGTTTGGACACTGCATCC...............................................................................................................................................................................................................................1911.001.00------1.00-------------
...................................................................ACTTTTTTTTTTTTTTTTGCTTTTTG.............................................................................................................................................................261.000.00-----------1.00--------
...............................................................TGTGACTTTTTTTTTTTCATC......................................................................................................................................................................211.000.00-1.00------------------
.........TGTTTGGACACTGCATCCAATTTGG........................................................................................................................................................................................................................251.000.001.00-------------------
...............................................................TGTGACTTTTTTTTTTTTTTCTG....................................................................................................................................................................231.000.001.00-------------------
...........................................................................................................ACTTCTTCATTTTCATTTTG...........................................................................................................................201.000.00---------1.00----------
.............................................................TTTGTGACTTTTTTTTTTTTTGGT.....................................................................................................................................................................241.000.001.00-------------------
....................................................................CTTTTTTTTTTTTTTTTGCTTGGGG.............................................................................................................................................................251.000.001.00-------------------
..................................................................GACTTTTTTTTTTTTTTTTGTGT.................................................................................................................................................................231.000.00---1.00----------------
...............................................................TGTGACTTTTTTTTTTTTTTTTGGGA.................................................................................................................................................................261.000.001.00-------------------
...........................................................TATTTGTGACTTTTTTTTTTTTTTA......................................................................................................................................................................251.000.00-1.00------------------
..............................................................TTGTGACTTTTTTTTTTTTTTAATG...................................................................................................................................................................251.000.00-1.00------------------
...................................................................ACTTTTTTTTTTTTTTTTGCTCAG...............................................................................................................................................................241.000.001.00-------------------
..................................................GTATGATTATATTTGTGACTTTTTTTTTTG..........................................................................................................................................................................301.000.00-1.00------------------
....................................................................CTTTTTTTTTTTTTTTTGCTTAGGC.............................................................................................................................................................251.000.00-1.00------------------
...ATTACTTGTTTGGACACTGCATCC...............................................................................................................................................................................................................................2411.001.00-----1.00--------------
..............................................................TTGTGACTTTTTTTTTTTTTTTTAAG..................................................................................................................................................................261.000.001.00-------------------
...................................................................ACTTTTTTTTTTTTTTTTGCTCGGA..............................................................................................................................................................251.000.001.00-------------------
..........................................................ATATTTGTGACTTTTTTTTTTTTTGC......................................................................................................................................................................261.000.00-1.00------------------
..............................................................TTGTGACTTTTTTTTTTTTTCCGG....................................................................................................................................................................241.000.001.00-------------------
............................................................ATTTGTGACTTTTTTTTTTTTTGAG.....................................................................................................................................................................251.000.001.00-------------------
..............................................................TTGTGACTTTTTTTTTTTTTTAAG....................................................................................................................................................................241.000.001.00-------------------
..............................................................TTGTGACTTTTTTTTTTTTTTTAAGT..................................................................................................................................................................261.000.00-1.00------------------
...................................................................ACTTTTTTTTTTTTTTTTGCTTTGAG.............................................................................................................................................................261.000.001.00-------------------
...................................................................ACTTTTTTTTTTTTTTTTGCCGTG...............................................................................................................................................................241.000.00-1.00------------------
....................................................................CTTTTTTTTTTTTTTTTGCTTGGC..............................................................................................................................................................241.000.001.00-------------------
............................ATTTTTTGGAACCTGAGTCAGG........................................................................................................................................................................................................221.000.00-1.00------------------
...............................................................TGTGACTTTTTTTTTTTTTGGT.....................................................................................................................................................................221.000.001.00-------------------
............................................................ATTTGTGACTTTTTTTTTTTTTTCGC....................................................................................................................................................................261.000.00-1.00------------------
....................................................................CTTTTTTTTTTTTTTTTGCTTCCCA.............................................................................................................................................................251.000.001.00-------------------
...ATTACTTGTTTGGACACT.....................................................................................................................................................................................................................................1811.001.00-----------------1.00--
...............................................................TGTGACTTTTTTTTTTTTTTTTGGAAG................................................................................................................................................................271.000.001.00-------------------
...............................................................TGTGACTTTTTTTTTTTACC.......................................................................................................................................................................201.000.001.00-------------------
.......CTTGTTTGGACACTGCATCC...............................................................................................................................................................................................................................2011.001.00----------------1.00---
...................................................................ACTTTTTTTTTTTTTTTTGCGACC...............................................................................................................................................................241.000.00--------1.00-----------
......ACTTGTTTGGACACTGCAT.................................................................................................................................................................................................................................1911.001.00------1.00-------------
...................................................................ACTTTTTTTTTTTTTTTTGCTTCGGG.............................................................................................................................................................261.000.00-1.00------------------
........TTGTTTGGACACTGCATC................................................................................................................................................................................................................................1811.001.00------------1.00-------
.............................................................TTTGTGACTTTTTTTTTTTTTTCTG....................................................................................................................................................................251.000.00-1.00------------------
.............TGGACACTGCATCCAATTTTTTGGAACCTGAGT............................................................................................................................................................................................................3311.001.00-------------1.00------
.................................................................TGACTTTTTTTTTTTTTTTTGTGGG................................................................................................................................................................251.000.001.00-------------------
...................................................................ACTTTTTTTTTTTTTTTTGCTCTTC..............................................................................................................................................................251.000.001.00-------------------
..............................................................TTGTGACTTTTTTTTTTTTTTTTG....................................................................................................................................................................2480.880.880.500.38------------------
............................................................................TTTTTTTTTGCTTAAATGTT..........................................................................................................................................................2020.500.50----0.50---------------
............................................................ATTTGTGACTTTTTTTTTTTTTTTTGG...................................................................................................................................................................2720.500.50-0.50------------------
............................................................ATTTGTGACTTTTTTTTTTTTTTTTG....................................................................................................................................................................2620.500.50-0.50------------------
...ATTACTTGTTTGGAC........................................................................................................................................................................................................................................1550.400.40-------------------0.40
.............................................................TTTGTGACTTTTTTTTTTTTTTTTGG...................................................................................................................................................................2650.401.200.40-------------------
...........TTTGGACACTGCATCC...............................................................................................................................................................................................................................1640.250.25-----0.25--------------
.............................................................TTTGTGACTTTTTTTTTTTTTTTTGGT..................................................................................................................................................................2750.201.20-0.20------------------
.............................................................TTTGTGACTTTTTTTTTTTTTTTTGACGG................................................................................................................................................................2950.201.200.20-------------------
.................................................................TGACTTTTTTTTTTTTTTTTGCT..................................................................................................................................................................2390.110.11-0.11------------------

Antisense strand
CTAATTACTTGTTTGGACACTGCATCCAATTTTTTGGAACCTGAGTTCAGGTATGATTATATTTGTGACTTTTTTTTTTTTTTTTGCTTAAATGTTACTTTTCATTCACTTCTTCATTTTCATTCTGTATACTCTTAGGGTTAATGTATATTGTGTGATACATATCATTGTTCCGAGACTTCAATAAATTAGAGCTTACTTAAAGCATAAAGCCATTTAGTTGCATGTTTACATTTTGCTTTTATTGTAG
................................................................(((((........................)))))........................................................................................................................................................
...............................................................64...............................................................129.......................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR189782SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR040029(GSM532914)
G026T. (cervix)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
..........................................................................................................................................................................................................................AGTTGCATGTTTACACTCT............. 191.000.00-------1.00------------
........................................................................................................................CATTCTGTATACTCTTAC................................................................................................................ 181.000.00--------------1.00-----