ID: uc003dqh.1_intron_0_0_chr3_82035533_f.3p
GENE: BC031255(1)
chr3:82234303-82234552+


(2)
BREAST 		(10)
CELL-LINE 		(1)
FIBROBLAST 		(1)
HELA 		(4)
OTHER 		(1)
TESTES

Sense strand
CTCACAAAATACTGGGATTACAGGCGTGAGCCACTGCACCCAGCCTAAAAATTTAATTTTTAAGATTGTATCTCCCTAAAAATGCACCAGCCTGAATAGAAAGATCTAGTTAATATTCAGTTGATTTCATTATTTTCCTATTAGGTATAATTATGACTTCGACCTTTGTTTTTTATTTTATTTTATTTTATTTTTGTCAGGAAAACGCCTATTTTGGAGTGAAACCAGGGCCGCCTTATGAGCTAAACAG
............................................................................((((((((.........((((((((.((..(((..((((....(((((..((((.(((..((.....))...))).))))..)))))...))))..)))..)).))))))))))))))))......................................................
.................................................................66....................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR189782SRR343335SRR343334SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577745(Rovira)
total RNA. (breast)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
.........................................................................................................................................................................TTTTTATTTTATTTTATTTTATTCAG.......................................................2650.000.002.0010.0026.0012.00---------------
.........................................................................................................................................................................TTTTTATTTTATTTTATTTTATTCTTG......................................................2720.000.0011.007.002.00----------------
.........................................................................................................................................................................TTTTTATTTTATTTTATTTTATTTCTG......................................................2711.000.006.003.002.00----------------
..........................................................................................................................................................................TTTTATTTTATTTTATTTTATTTTTCCAG...................................................299.000.005.004.00-----------------
..........................................................................................................................................................................TTTTATTTTATTTTATTTTATTTTTCAGC...................................................299.000.00----4.005.00-------------
.........................................................................................................................................................................TTTTTATTTTATTTTATTTTATTTTTCTG....................................................298.000.005.002.001.00----------------
........................................................................................................................................................................TTTTTTATTTTATTTTATTTTCCTG.........................................................255.000.00--3.002.00---------------
.........................................................................................................................................................................TTTTTATTTTATTTTATTTTATTTCATG.....................................................285.000.002.002.00--1.00--------------
.........................................................................................................................................................................TTTTTATTTTATTTTATTTTATCG.........................................................244.000.00-1.001.001.00---1.00-----------
......................................................................TCTCCCTAAAAATGCAACAG................................................................................................................................................................203.000.00---------2.001.00--------
........................................................................................................................................................................TTTTTTATTTTATTTTATTTTATTTTCG......................................................283.000.003.00------------------
.........................................................................................................................................................................TTTTTATTTTATTTTATTTTCTTG.........................................................243.000.001.002.00-----------------
.........................................................................................................................................................................TTTTTATTTTATTTTATTTTATTTTTCCG....................................................293.000.001.00-1.001.00---------------
....................................................................................................................................................................TTTGTTTTTTATTTTATTTTATTTCATT..........................................................282.000.00-----2.00-------------
............................................................................................................................................................................TTATTTTATTTTATTTTATTTTTCTCC...................................................272.000.00----2.00--------------
.........................................................................................................................................................................TTTTTATTTTATTTTATTTTATTTCTTG.....................................................282.000.00-1.001.00----------------
.............................................................................................................................................................................TATTTTATTTTATTTTATTTTTCCG....................................................252.000.00-2.00-----------------
..........................................................................................................................................................................TTTTATTTTATTTTATTTTATTTTTCAAG...................................................292.000.00-1.00-1.00---------------
..........................................................................................................................................................................TTTTATTTTATTTTATTTTATTTTTCCG....................................................282.000.00-2.00-----------------
......................................................AATTTTTAAGATTGTATCCCAG..............................................................................................................................................................................222.000.00-------2.00-----------
.........................................................................................................................................................................TTTTTATTTTATTTTATTTTATTTCTAG.....................................................282.000.001.001.00-----------------
........ATACTGGGATTACAGGCGAGCC............................................................................................................................................................................................................................222.000.00----2.00--------------
........................................................................................................................................................................TTTTTTATTTTATTTTATTTTCTAG.........................................................252.000.00-1.00-1.00---------------
.........................................................................................................................................................................TTTTTATTTTATTTTATTCTCG...........................................................222.000.00-1.00-1.00---------------
.............................................................................................................................................................................TATTTTATTTTATTTTATTTTTCGGG...................................................262.000.00-----2.00-------------
.........................................................................................................................................................................TTTTTATTTTATTTTATTTTATTTTTCTTG...................................................301.000.00-1.00-----------------
...........................................................................................................................................................................TTTATTTTATTTTATTTTATTTTTCAAG...................................................281.000.00---1.00---------------
.........TACTGGGATTACAGGCGTGAGCCACTGCCTC..................................................................................................................................................................................................................311.000.00----1.00--------------
............................................................................................................................................................................TTATTTTATTTTATTTTATTTTTCAAG...................................................271.000.001.00------------------
.........................................................................................................................................................................TTTTTATTTTATTTTATTTTATTTTCTCG....................................................291.000.001.00------------------
..........................................................................................................................................................................................................................GTGAAACCAGGGCCGCTT..............181.000.00-----------1.00-------
.........................................................................................................................................................................TTTTTATTTTATTTTATTTGTGT..........................................................231.000.00------1.00------------
..............................................................................................................................................................................ATTTTATTTTATTTTATTTTTCGGG...................................................251.000.00----1.00--------------
...........................................................................................................................................................................TTTATTTTATTTTATTTTATTTTTCAGC...................................................281.000.00----1.00--------------
........................................................................................................................................................................TTTTTTATTTTATTTTATTTTATATCG.......................................................271.000.001.00------------------
.........................................................................................................................................................................TTTTTATTTTATTTTATTCCT............................................................211.000.001.00------------------
........................................................................................................................................................................TTTTTTATTTTATTTTATTTTATTTTTAAAG...................................................311.000.00-1.00-----------------
........ATACTGGGATTACAGGCGTGAGCCACTGGG....................................................................................................................................................................................................................301.000.00----1.00--------------
........................................................................................................................................................................TTTTTTATTTTATTTTATTTTATTTTCCG.....................................................291.000.001.00------------------
.........................................................................................................................................................................TTTTTATTTTATTTTATTTGATC..........................................................231.000.00---1.00---------------
.............................................................................................................................................................................TATTTTATTTTATTTTATTTTTCGAT...................................................261.000.001.00------------------
.........................................................................................................................................................................TTTTTATTTTATTTTATTTTATTTCCG......................................................271.000.00---1.00---------------
............................................................................................................................................................................TTATTTTATTTTATTTTATTTTTGCCG...................................................271.000.00----1.00--------------
........................................................................................................................................................................TTTTTTATTTTATTTTATTTTATCCAG.......................................................271.000.001.00------------------
........................................................................................................................................................................TTTTTTATTTTATTTTATTTTATTTTTCTT....................................................301.000.001.00------------------
.........................................................................................................................................................................TTTTTATTTTATTTTATTTTATCCAG.......................................................261.000.00-1.00-----------------
...........................................................................................................................................................................TTTATTTTATTTTATTTTATTTTTCCG....................................................271.000.001.00------------------
............................................................................................................................................................................TTATTTTATTTTATTTTATTTTTCCG....................................................261.000.00-1.00-----------------
.........................................................................................................................................................................TTTTTATTTTATTTTATTTTATTTGATG.....................................................281.000.00-1.00-----------------
.........TACTGGGATTACAGGCGTGAGCCAAGA......................................................................................................................................................................................................................271.000.00------1.00------------
.........................................................................................................................................................................TTTTTATTTTATTTTATTTTATTTCAG......................................................271.000.00--1.00----------------
.........................................................................................................................................................................TTTTTATTTTATTTTATTTTATTCCTG......................................................271.000.00-1.00-----------------
........................................................................................................................................................................TTTTTTATTTTATTTTATTTTATTCTCG......................................................281.000.001.00------------------
........................................................................................................................................................................TTTTTTATTTTATTTTATTTTATTTCTAG.....................................................291.000.00------1.00------------
...............................................................................................................................................................................TTTTATTTTATTTTATTTTTGCGGG..................................................251.000.00----1.00--------------
.........................................................................................................................................................................TTTTTATTTTATTTTATTTTATTTTCTTT....................................................291.000.00-1.00-----------------
.........................................................................................................................................................................TTTTTATTTTATTTTATTTTATTTCACG.....................................................281.000.001.00------------------
..............................................................................................................................................................TCGACCTTTGTTTTTTTACT........................................................................201.000.00------1.00------------
.........................................................................................................................................................................TTTTTATTTTATTTTATTTTATTTTCTAG....................................................291.000.00--1.00----------------
.........TACTGGGATTACAGGCGAGTC............................................................................................................................................................................................................................211.000.00-----1.00-------------
..............................................................................................................................................................TCGACCTTTGTTTTTTTC..........................................................................181.000.001.00------------------
.....................AGGCGTGAGCCACTGCACCCAGGG.............................................................................................................................................................................................................241.000.00-----1.00-------------
........................................................................................................................................................................TTTTTTATTTTATTTTATTTTATTTCTG......................................................281.000.00-1.00-----------------
..............................................................................................................................................................................ATTTTATTTTATTTTATTTTTCTGC...................................................251.000.00----1.00--------------
.........................................................................................................................................................................TTTTTATTTTATTTTATTTTATTTCATC.....................................................281.000.00----1.00--------------
.........................................................................................................................................................................TTTTTATTTTATTTTATTTTATTCTCG......................................................271.000.001.00------------------
..........................................................................................................................................................................TTTTATTTTATTTTATTTTATTTTTGCACC..................................................301.000.00---1.00---------------
.........................................................................................................................................................................TTTTTATTTTATTTTATTTTATTTTTGGGAC..................................................311.000.00---1.00---------------
.............................................................................................................................................................................TATTTTATTTTATTTTATTTTTCAAG...................................................261.000.001.00------------------
........ATACTGGGATTACAGGCGAG..............................................................................................................................................................................................................................201.000.00----1.00--------------
.........................................................................................................................................................................TTTTTATTTTATTTTATTTTATTTTCCCG....................................................291.000.001.00------------------
.........TACTGGGATTACAGGCGAGGC............................................................................................................................................................................................................................211.000.00-----1.00-------------
.........................................................................................................................................................................TTTTTATTTTATTTTATTTTATTTTTCTT....................................................291.000.001.00------------------
..........ACTGGGATTACAGGCGTGAGCCAAA.......................................................................................................................................................................................................................251.000.00--------------1.00----
........................................................................................................................................................................TTTTTTATTTTATTTTATTTTATTCTTG......................................................281.000.00-1.00-----------------
.........................................................................................................................................................................TTTTTATTTTATTTTATTTTATTTTTGTCTAA.................................................321.000.00---1.00---------------
.........................................................................................................................................................................TTTTTATTTTATTTTATTTCATG..........................................................231.000.001.00------------------
.........................................................................................................................................................................TTTTTATTTTATTTTATTTTATTCGAG......................................................271.000.00-----1.00-------------
........................................................................................................................................................................TTTTTTATTTTATTTTATTTTATTTTCAG.....................................................291.000.00---1.00---------------
.........................................................................................................................................................................TTTTTATTTTATTTTATTTTATTTTTGGGGG..................................................311.000.001.00------------------
..................................................................................................................................................................................TATTTTATTTTATTTTTGTCATTC................................................241.000.00----1.00--------------
........................................................................................................................................................................TTTTTTATTTTATTTTATTTTATTTCTTG.....................................................291.000.001.00------------------
.........................................................................................................................................................................TTTTTATTTTATTTTATTTTATTTGACC.....................................................281.000.00----1.00--------------
........................................................................................................................................................................TTTTTTATTTTATTTTATTTTATTTTTCTG....................................................301.000.00---1.00---------------
...................................................................................................................................................................CTTTGTTTTTTATTTTATCAC..................................................................211.000.00------1.00------------
........................................................................................................................................................................TTTTTTATTTTATTTTATTTTATTTTCT......................................................281.000.001.00------------------
........................................................................................................................................................................TTTTTTATTTTATTTTATTTTATTTTCTG.....................................................291.000.001.00------------------
.........................................................................................................................................................................TTTTTATTTTATTTTATTTTATTTGCAC.....................................................281.000.00---1.00---------------
.........................................................................................................................................................................TTTTTATTTTATTTTATTTTATTGG........................................................251.000.00----1.00--------------
.....................................................................................................................................................................TTGTTTTTTATTTTATTTTATTTTATTTTTG......................................................3120.500.50--0.50----------------
.......................................................................................CAGCCTGAATAGAAAG...................................................................................................................................................1640.250.25---------------0.25---

Antisense strand
CTCACAAAATACTGGGATTACAGGCGTGAGCCACTGCACCCAGCCTAAAAATTTAATTTTTAAGATTGTATCTCCCTAAAAATGCACCAGCCTGAATAGAAAGATCTAGTTAATATTCAGTTGATTTCATTATTTTCCTATTAGGTATAATTATGACTTCGACCTTTGTTTTTTATTTTATTTTATTTTATTTTTGTCAGGAAAACGCCTATTTTGGAGTGAAACCAGGGCCGCCTTATGAGCTAAACAG
............................................................................((((((((.........((((((((.((..(((..((((....(((((..((((.(((..((.....))...))).))))..)))))...))))..)))..)).))))))))))))))))......................................................
.................................................................66....................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR189782SRR343335SRR343334SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577745(Rovira)
total RNA. (breast)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
..................TACAGGCGTGAGCCACTGCACCCC................................................................................................................................................................................................................ 242.000.00----2.00--------------
.........................GTGAGCCACTGCACCCAGCCTAAAACCC..................................................................................................................................................................................................... 282.000.00----1.001.00-------------
........ATACTGGGATTACAGGCGTGAGAG.......................................................................................................................................................................................................................... 241.000.00--------1.00----------
.......................................CCAGCCTAAAAATTTATG................................................................................................................................................................................................. 181.000.00-------------1.00-----
........................................................TTTTTAAGATTGTATATAG............................................................................................................................................................................... 191.000.00-------1.00-----------
......................GGCGTGAGCCACTGCACCCAGCCTCAC......................................................................................................................................................................................................... 271.000.00----1.00--------------
.........................GTGAGCCACTGCACCCAGCCTCCCC........................................................................................................................................................................................................ 251.000.00-----1.00-------------
...........................................................................................................................................................ACTTCGACCTTTGTTAGAG............................................................................ 191.000.00------------1.00------
.......................GCGTGAGCCACTGCACCCAGCCTGCG......................................................................................................................................................................................................... 261.000.00-----1.00-------------
......AAATACTGGGATTACAGGCGTGAAT........................................................................................................................................................................................................................... 251.000.00--------1.00----------
...........................................................................GCTGGTGCATTTTTAG............................................................................................................................................................... 1640.250.25----------------0.25--
......................................TAAATTTTTAGGCTGGG................................................................................................................................................................................................... 1760.170.17------------------0.17
......................................CCCAGCCTAAAAATTTAGCT................................................................................................................................................................................................ 200.170.00-----------------0.17-