ID: uc003dpe.2_intron_2_0_chr3_72428579_r.5p
GENE: (1)
chr3:72495447-72495696-


(1)
B-CELL
(1)
BRAIN
(2)
BREAST
(10)
CELL-LINE
(2)
CERVIX
(1)
HEART
(1)
HELA
(1)
LIVER
(3)
OTHER
(3)
SKIN

Sense strand
GAAGCCTTTAAATGCAGCATCTGCGATGTGAGGAAAGGCACCTCCACCAGGTACTTGAAGATCTGTGTTACCTTTTGTTAAAGGACTTTTTTTTTTTTTTTTTAAGTGAGAGGGTAGTGAGCCTTACTTTCTGCCCTTTTTCCAACTTGTTGATTACGGCTTTTTTTGTATTTGCGGGTGGGTTGTGTGTGTTTTTGGGTTGAGTGTATTAAGTGTTGGGTGAAAAGCCTTGTGTTCGCTAAATGATTTA
................................................................................((((((............((..(((((((((((((((.(((.....))).))))))))))....)))))..)).((((((((..(((((....))))).))))))))...))))))......................................................
...............................................................................80......................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR343334SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037936(GSM510474)
293cand1. (cell line)
TAX577588(Rovira)
total RNA. (breast)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR343335SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR040015(GSM532900)
G623T. (cervix)
....................................................................................ACTTTTTTTTTTTTTTTTTATTTT..............................................................................................................................................2410.000.001.00-2.003.00-3.00-1.00-----------------
................................................................................AAGGACTTTTTTTTTTTTTTTTCT..................................................................................................................................................243.000.003.00------------------------
....................................................................................ACTTTTTTTTTTTTTTTTTATAAG..............................................................................................................................................243.000.00--2.001.00---------------------
.................................................................................AGGACTTTTTTTTTTTTTTTTTAAGGG..............................................................................................................................................272.000.00-2.00-----------------------
....................................................................................ACTTTTTTTTTTTTTTTTTAACCG..............................................................................................................................................242.000.00-1.001.00----------------------
.................................................................................AGGACTTTTTTTTTTTTTTTTTGCTC...............................................................................................................................................262.000.00-2.00-----------------------
....................................................................................ACTTTTTTTTTTTTTTTTTAAGGG..............................................................................................................................................242.000.001.001.00-----------------------
....................................................................................ACTTTTTTTTTTTTTTTTTATAAT..............................................................................................................................................242.000.00--1.00--1.00-------------------
....................................................................................ACTTTTTTTTTTTTTTTTTATTCG..............................................................................................................................................242.000.00--1.001.00---------------------
.................................................................................AGGACTTTTTTTTTTTTTTTTTACT................................................................................................................................................251.000.001.00------------------------
....................................................................................ACTTTTTTTTTTTTTTTTTAACCGG.............................................................................................................................................251.000.00---1.00---------------------
........................................................................................................AGTGAGAGGGTAGTGAGCCTTACTC.........................................................................................................................251.000.00-1.00-----------------------
................................................................................AAGGACTTTTTTTTTTTTTAC.....................................................................................................................................................211.000.001.00------------------------
.....................TGCGATGTGAGGAAAGGC...................................................................................................................................................................................................................1811.001.00--------------1.00----------
............................................................................................................................................................................TGCGGGTGGGTTGTGTGGTT..........................................................201.000.00------------1.00------------
....................................................................................ACTTTTTTTTTTTTTTTTTAAGTCGAG...........................................................................................................................................271.000.00--1.00----------------------
....................................................................................ACTTTTTTTTTTTTTTTTTATTCA..............................................................................................................................................241.000.00--1.00----------------------
..................................................................................................................................................................................................................AAGTGTTGGGTGAAAAGC......................1811.001.00------------------1.00------
...............................................................................AAAGGACTTTTTTTTTTTCTT......................................................................................................................................................211.000.00-----------------1.00-------
.................................................................................AGGACTTTTTTTTTTTTTTTTTGGGC...............................................................................................................................................261.000.001.00------------------------
.........................................................................................TTTTTTTTTTTTTTAAGTGAGAGGG........................................................................................................................................2511.001.00-1.00-----------------------
..............................................................................................TTTTTTTTTAAGTGAGAGGGTAGTGAG.................................................................................................................................2711.001.00------1.00------------------
.........................................CTCCACCAGGTACTTGAAGAT............................................................................................................................................................................................2111.001.00------------------------1.00
.................................................................................AGGACTTTTTTTTTTTTTTTCCGC.................................................................................................................................................241.000.001.00------------------------
....................................................................................ACTTTTTTTTTTTTTTTTTATCG...............................................................................................................................................231.000.00--1.00----------------------
....................................................................................ACTTTTTTTTTTTTTTTTTAACCCG.............................................................................................................................................251.000.00---1.00---------------------
.................................................................................AGGACTTTTTTTTTTTTTTTTTATG................................................................................................................................................251.000.001.00------------------------
............TGCAGCATCTGCGATGTGAGG.........................................................................................................................................................................................................................2111.001.00---------1.00---------------
.................................................................................AGGACTTTTTTTTTTTTCAAG....................................................................................................................................................211.000.00-1.00-----------------------
........................................................................................................................................................ATTACGGCTTTTTTTCTTT...............................................................................191.000.00-1.00-----------------------
.................................................................................AGGACTTTTTTTTTTTTTTTTTACC................................................................................................................................................251.000.00-1.00-----------------------
................................................................................AAGGACTTTTTTTTTTTTTTTTCTT.................................................................................................................................................251.000.001.00------------------------
................................................................................................................................................ACTTGTTGATTACGGCTTTTTTGT..................................................................................241.000.001.00------------------------
..............................................................................TAAAGGACTTTTTTTTTTTCAAG.....................................................................................................................................................231.000.00-1.00-----------------------
................................................................................AAGGACTTTTTTTTTTTTTTTTTGGAG...............................................................................................................................................271.000.001.00------------------------
....................................................................................ACTTTTTTTTTTTTTTTTTATTAC..............................................................................................................................................241.000.00------1.00------------------
.................................................................................AGGACTTTTTTTTTTTTTTTTTGCCA...............................................................................................................................................261.000.00-1.00-----------------------
....................................................................................ACTTTTTTTTTTTTTTTTTATTGC..............................................................................................................................................241.000.00---1.00---------------------
..........................TGTGAGGAAAGGCACCTCCATA..........................................................................................................................................................................................................221.000.00-----------------------1.00-
....................................................................................ACTTTTTTTTTTTTTTTTTAAGGGAC............................................................................................................................................261.000.00-1.00-----------------------
.............................GAGGAAAGGCACCTCCACCAGAAA.....................................................................................................................................................................................................241.000.00----------------------1.00--
................................................................................AAGGACTTTTTTTTTTTTTTTTTAAGTG..............................................................................................................................................2811.001.001.00------------------------
....................................................................................ACTTTTTTTTTTTTTTTTTATCAC..............................................................................................................................................241.000.001.00------------------------
..................ATCTGCGATGTGAGGAAAGGC...................................................................................................................................................................................................................2111.001.00--------------------1.00----
....................................................................................ACTTTTTTTTTTTTTTTTTAAGTTGAA...........................................................................................................................................271.000.001.00------------------------
...............................................................................AAAGGACTTTTTTTTTTTATC......................................................................................................................................................211.000.00------1.00------------------
....................................................................................ACTTTTTTTTTTTTTTTTTATCCG..............................................................................................................................................241.000.00-------1.00-----------------
.................................................................................AGGACTTTTTTTTTTTTTTTCCGG.................................................................................................................................................241.000.001.00------------------------
.......................................................................................................................AGCCTTACTTTCTGCCCTTTCC.............................................................................................................221.000.00-1.00-----------------------
.............................GAGGAAAGGCACCTCCACC..........................................................................................................................................................................................................1911.001.00-------------1.00-----------
....................................................................................ACTTTTTTTTTTTTTTTTTAAGTGGG............................................................................................................................................261.000.00-1.00-----------------------
..........................................................................................................................................................................TTTGCGGGTGGGTTGTGTGCGT..........................................................221.000.00-1.00-----------------------
.....................................GCACCTCCACCAGGTTTT...................................................................................................................................................................................................181.000.00-----------1.00-------------
.................................................................................AGGACTTTTTTTTTTTTTTTCTGG.................................................................................................................................................241.000.001.00------------------------
.................................................................................AGGACTTTTTTTTTTTTTTTTTGCT................................................................................................................................................251.000.00-1.00-----------------------
.........................................................................................................................................................TTACGGCTTTTTTTGCC................................................................................171.000.00----------1.00--------------
....................................................................................ACTTTTTTTTTTTTTTTTTAAGGGG.............................................................................................................................................251.000.00-1.00-----------------------
.................................................................................AGGACTTTTTTTTTTTTTTTTTAAGAT..............................................................................................................................................271.000.001.00------------------------
.................................................................................AGGACTTTTTTTTTTTTTTTTTGGCA...............................................................................................................................................261.000.001.00------------------------
....................................................................................................TTTAAGTGAGAGGGTAGTGAGCC...............................................................................................................................2311.001.001.00------------------------
....................................................................................ACTTTTTTTTTTTTTTTTTATCAA..............................................................................................................................................241.000.00--1.00----------------------
.................................................................................................TTTTTTAAGTGAGAGGG........................................................................................................................................1770.140.14-0.14-----------------------

Antisense strand
GAAGCCTTTAAATGCAGCATCTGCGATGTGAGGAAAGGCACCTCCACCAGGTACTTGAAGATCTGTGTTACCTTTTGTTAAAGGACTTTTTTTTTTTTTTTTTAAGTGAGAGGGTAGTGAGCCTTACTTTCTGCCCTTTTTCCAACTTGTTGATTACGGCTTTTTTTGTATTTGCGGGTGGGTTGTGTGTGTTTTTGGGTTGAGTGTATTAAGTGTTGGGTGAAAAGCCTTGTGTTCGCTAAATGATTTA
................................................................................((((((............((..(((((((((((((((.(((.....))).))))))))))....)))))..)).((((((((..(((((....))))).))))))))...))))))......................................................
...............................................................................80......................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR343334SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037936(GSM510474)
293cand1. (cell line)
TAX577588(Rovira)
total RNA. (breast)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR343335SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR040015(GSM532900)
G623T. (cervix)
...............................................................................AAAGGACTTTTTTTTTTTTTTTTTTCT................................................................................................................................................ 272.000.00----2.00--------------------
...............................................................................AAAGGACTTTTTTTTTTTTTTTTTTGT................................................................................................................................................ 272.000.00----2.00--------------------
.........................................................................................................................................................TTACGGCTTTTTTTGCTGT.............................................................................. 191.000.00--------1.00----------------
..............CTCACATCGCAGATGCTG.......................................................................................................................................................................................................................... 1811.001.00---------------1.00---------
.........................................................................................................................................................TTACGGCTTTTTTTGTC................................................................................ 171.000.00-------------------1.00-----
..........................................................................................................................AACAAGTTGGAAAAAGGGCAGAAAGTAAG................................................................................................... 2911.001.00---------------------1.00---
..............................................................................................TTTTTTTTTAAGTGACTAT......................................................................................................................................... 191.000.00-----1.00-------------------
..................................................................................GGACTTTTTTTTTTTTTTTTTGATT............................................................................................................................................... 251.000.00----1.00--------------------
.................................................................................AGGACTTTTTTTTTTTTTTTTTCCCG............................................................................................................................................... 261.000.00----1.00--------------------
...................................................................................................................................................................................GGGTTGTGTGTGTTTTTTG.................................................... 191.000.00----------------1.00--------