ID: uc003doi.2_intron_10_0_chr3_71090684_r.3p
GENE: (4)
chr3:71090634-71090883-


(1)
AGO2.ip 		(1)
B-CELL 		(2)
BRAIN 		(2)
BREAST 		(12)
CELL-LINE 		(1)
CERVIX 		(3)
HEART 		(3)
HELA 		(5)
LIVER 		(1)
OTHER 		(13)
SKIN

Sense strand
CAACTTCCACTCAGTTGCTCGGTAAGAGGACACACTTTTTACTACCGCATCTGCCGTAGTTGGGAGGGGAAAAAAAACTGCACACACCGAAAAACCCCCCTAACACTAGGCTTTGTTTACTGACTCTTTGATTTAATTGCTGTTTGAAGAGGACGGAATTAGCTGTTAATTGATTTAATTATCCAATTTGTTTGTTTCAGGCATGATTCCAACAGAACTGCAGCAGCTCTGGAAAGAAGTGACAAGTGCT
............................................................................................................((((..((((.....((((((((............))))))))....)))).))))......................................................................................
.....................................................................................................102.................................................................170..............................................................................
SizePerfect hitTotal NormPerfect NormDRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532874(GSM532874)
G699T. (cervix)		SRR189782SRR189785SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
..............................................................GGAGGGGAAAAAAAA.............................................................................................................................................................................15049.0049.0013.0014.0014.008.00-----------------------------------------
.............................................................GGGAGGGGAAAAAAA..............................................................................................................................................................................15018.0018.006.002.003.005.00-----------2.00-----------------------------
.............................................................GGGAGGGGAAAAAAAA.............................................................................................................................................................................1608.008.001.003.001.003.00-----------------------------------------
...............................................................................................................................TTGATTTAATTGCTGTTTGAAGAGGACGGAATTAGCTGTTAATTGATTTAATTATCCAATTTGTTTGTTTCAG..................................................7317.007.00----7.00----------------------------------------
.............................................................................................................................CTTTGATTTAATTGCTGTTTGAAGAGGACGGAATTAGCTGTTAATTGATTTAATTATCCAATTTGTTTGT.......................................................7014.004.00----4.00----------------------------------------
..............................................................................................................................TTTGATTTAATTGCTGTTTGAAGAGGACGGAATTAGCTGTTAATTGATTTAATTATCCAATTTGTTTGTTTCAG..................................................7413.003.00-----3.00---------------------------------------
.....................................................................................................................................................................................................................AGAACTGCAGCAGCTCTGGAAAGA.............2412.002.00----------2.00----------------------------------
.....................................................................................................................................................................................................................AGAACTGCAGCAGCTCTGGA.................2012.002.00--------1.00------------1.00-----------------------
..............................................................................................................................TTTGATTTAATTGCTGTTTGAAGAGGACGGAATTAGCTGTTAATTGATTTAATTATCC..................................................................5812.002.00-----2.00---------------------------------------
..........................................................................................................................................................................................................................TGCAGCAGCTCTGGAAAGAAGTGACA......2612.002.00----------------------1.001.00---------------------
..............................................................................................................................................................................TTAATTATCCAATTTGTTTGTTTCAG..................................................2612.002.00-----------------------------------1.00--1.00------
...........................................................................................................................................................................................................................GCAGCAGCTCTGGAAAGAAGTGAC.......2411.001.00--------------------1.00------------------------
.........................................................................................................................................................................................................CATGATTCCAACAGAACTGCAGCAGCTCTGGA.................3211.001.00--------------1.00------------------------------
................GCTCGGTAAGAGGACGACC.......................................................................................................................................................................................................................191.000.00------------------------------------1.00--------
..........................................................................................................................................................................................................ATGATTCCAACAGAACTGCAGC..........................2211.001.00------------------1.00--------------------------
..........................................................................................................................................................................................................ATGATTCCAACAGAACTGCA............................2011.001.00---------1.00-----------------------------------
.........................................................................................................................................................................................................................CTGCAGCAGCTCTGGAAAGAAGTGACAAG....2911.001.00-------------------------1.00-------------------
..........................................................................................................................................................................................................................TGCAGCAGCTCTGGATT...............171.000.00------1.00--------------------------------------
.......................................................................................................................................................................................................................AACTGCAGCAGCTCTGGAAAGAAG...........2411.001.00-------1.00-------------------------------------
................................................................................................................................................................................................................................AGCTCTGGAAAGAAGTGCC.......191.000.00-----------------------------1.00---------------
....................................................................................................................................................................................................................CAGAACTGCAGCAGCTCTGGAAAGAAGT..........2811.001.00-------------1.00-------------------------------
..................................................................................................................................................................................................................................CTCTGGAAAGAAGTGACAAGTGC.2311.001.00-----------1.00---------------------------------
.....................................................................................................................................................................................................................AGAACTGCAGCAGCTCTGGAAAGAA............2511.001.00-----------1.00---------------------------------
...............................................................................................................................................TTGAAGAGGACGGAATTAGCTGT....................................................................................2311.001.00---------------------------1.00-----------------
...............................................................................................................................................................................................................TCCAACAGAACTGCAGCAGCTCTGGAA................2711.001.00----------------------------1.00----------------
..............................................................................................................................................................................................................................GCAGCTCTGGAAAGAAGTGAC.......2111.001.00--------------------------------1.00------------
.........................................................................................................................................................................................................................CTGCAGCAGCTCTGGAAAGAAGTG.........2411.001.00----------------------------------1.00----------
..........................................................................................................TAGGCTTTGTTTACTCTG..............................................................................................................................181.000.00------------1.00--------------------------------
.............................................................................................................................................................................................................ATTCCAACAGAACTGCAGCAGCTCTGG..................2711.001.00------------------------1.00--------------------
...........................................................................................................................................................................................................................GCAGCAGCTCTGGAAAGAAGTGACA......2511.001.00-------1.00-------------------------------------
................................................................................................................................................................................................................CCAACAGAACTGCAGCAGCT......................2011.001.00--------------------------1.00------------------
.......................................................................................................................................................................................................................AACTGCAGCAGCTCTGGAAAGAAGCGA........2711.001.00--------------1.00------------------------------
...................................................................................................................................................................................................................................TCTGGAAAGAAGTGACAAGTGA.221.000.00-------------1.00-------------------------------
.......................................................................................................................................................................................................................AACTGCAGCAGCTCTGGAAAGAAGTGAC.......2811.001.00-------1.00-------------------------------------
............................................CCGCATCTGCCGTAGCGC............................................................................................................................................................................................181.000.00-------------------1.00-------------------------
.............................................................GGGAGGGGAAAAAAAATTGT.........................................................................................................................................................................2001.008.00-------------------------------------1.00-------
......................................................................................................................................................................................................................GAACTGCAGCAGCTCTGGAA................2011.001.00---------------------------------1.00-----------
...................................................................................................................................................................................................................................TCTGGAAAGAAGTGACAAGTGC.2211.001.00-------1.00-------------------------------------
.....................................................................................................................................................................................................................AGAACTGCAGCAGCTCTGGAAAGAAGTG.........2811.001.00------------1.00--------------------------------
....................................................................................................................................................................................................................CAGAACTGCAGCAGCTCT....................1831.001.00--------0.330.33------------------------------0.33----
............................................................................................................................................................................................................................CAGCAGCTCTGGAAAGAAGTGACA......2411.001.00-----------------1.00---------------------------
.......................................................................................................................................................................................................................................GAAAGAAGTGACAAGTGAA191.000.00-------------------------------1.00-------------
...................................................................................................................................................................................................................ACAGAACTGCAGCAGCTTT....................191.000.00---------1.00-----------------------------------
....................................................................................................................................................................................................................CAGAACTGCAGCAGCTCTGGAAAGAAGTGA........3011.001.00--------1.00------------------------------------
....................................................................................................................................................................................................................CAGAACTGCAGCAGCTCTGG..................2020.500.50---------------------------------------0.50-----
.............................................................................................................................................................................................................................AGCAGCTCTGGAAAGAA............1760.170.17-----------------------------------------0.17---
..........................................................GTTGGGAGGGGAAAAA................................................................................................................................................................................1670.140.14---0.14-----------------------------------------
....................................................................................................................................................................................................................CAGAACTGCAGCAGCT......................1680.120.12-------------------------------------------0.12-

Antisense strand
CAACTTCCACTCAGTTGCTCGGTAAGAGGACACACTTTTTACTACCGCATCTGCCGTAGTTGGGAGGGGAAAAAAAACTGCACACACCGAAAAACCCCCCTAACACTAGGCTTTGTTTACTGACTCTTTGATTTAATTGCTGTTTGAAGAGGACGGAATTAGCTGTTAATTGATTTAATTATCCAATTTGTTTGTTTCAGGCATGATTCCAACAGAACTGCAGCAGCTCTGGAAAGAAGTGACAAGTGCT
............................................................................................................((((..((((.....((((((((............))))))))....)))).))))......................................................................................
.....................................................................................................102.................................................................170..............................................................................
SizePerfect hitTotal NormPerfect NormDRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532874(GSM532874)
G699T. (cervix)		SRR189782SRR189785SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
..........................................................................................................................................................................................................................TGCAGCAGCTCTGGAAGCA............. 194.000.00------4.00--------------------------------------
..........................................................................................................................................................................................................................TGCAGCAGCTCTGGAAGC.............. 182.000.00----------------2.00----------------------------
............................................................................................................................................................AATTAGCTGTTAATTTAG............................................................................ 181.000.00-----------------1.00---------------------------
.............................ACACACTTTTTACTACAAAG......................................................................................................................................................................................................... 201.000.00------------------------------1.00--------------
............................................................................................................................................................CAATTAACAGCTAATT.............................................................................. 1660.170.17------------------------------------------0.17--
.............................................................................................................................................................................................................................TCTTTCCAGAGCTGCT............. 1690.110.11--------------------------------------------0.11