ID: uc003dnw.2_intron_3_0_chr3_69481913_r.5p
GENE: FRMD4B(1)
chr3:69591157-69591406-


(1)
AGO2.ip
(9)
BREAST
(17)
CELL-LINE
(7)
CERVIX
(1)
FIBROBLAST
(2)
HEART
(1)
HELA
(1)
LIVER
(1)
OTHER
(32)
SKIN

Sense strand
AGTAGCCGTCTACAGCCCCGGAGCGCCGCAGGGAGGAGGTGGCGGAGCAGGTAGGTGGGCGACCGCCCCGGGCTCCCCAAGCGTGCTGCCAGGGCGAGGCCGCAAGACGCGGCCACGGGCGCGCCCGGTGCGCCCCGGGCGCAGCGCGCACGTTTGGAGACCCCCAGCGGAGGTGCGGGTCCCAGGAGTTTGGGAGAGCGGAAAACCCCGCCCTGGGGCTCGAGGTCTAGTGCAGCCTCCGCTGGAGTCC
..........................................................................................................................((.((.((((((...)))))).)).)).....(((.(((((...((....))..))))))))..................................................................
.........................................................................................................................122...........................................................184................................................................
SizePerfect hitTotal NormPerfect NormSRR040037(GSM532922)
G243T. (cervix)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR040039(GSM532924)
G531T. (cervix)
SRR040007(GSM532892)
G601T. (cervix)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189782TAX577742(Rovira)
total RNA. (breast)
TAX577744(Rovira)
total RNA. (breast)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
GSM416733(GSM416733)
HEK293. (cell line)
SRR037931(GSM510469)
293GFP. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
TAX577588(Rovira)
total RNA. (breast)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040029(GSM532914)
G026T. (cervix)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
GSM532890(GSM532890)
G576T. (cervix)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR040035(GSM532920)
G001T. (cervix)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR029129(GSM416758)
SW480. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..............................................................................................................................GGTGCGCCCCGGGCGGGT..........................................................................................................1850.000.0036.00-11.002.00--------------------------1.00------------------------------------------
..............................................................................................................................GGTGCGCCCCGGGCGGGTC.........................................................................................................1918.000.0011.00-6.001.00---------------------------------------------------------------------
.......................................TGGCGGAGCAGGTAGACG.................................................................................................................................................................................................189.000.00-9.00-----------------------------------------------------------------------
.......................................TGGCGGAGCAGGTAGACGC................................................................................................................................................................................................198.000.00-8.00-----------------------------------------------------------------------
..............................................................................................................................GGTGCGCCCCGGGCGGGA..........................................................................................................182.000.001.00-1.00----------------------------------------------------------------------
..............................................................................................................................GGTGCGCCCCGGGCGGGC..........................................................................................................182.000.001.00--1.00---------------------------------------------------------------------
..........................................................................................................................GCCCGGTGCGCCCCGGGCG.............................................................................................................1912.002.00-----------1.00--------------------1.00----------------------------------------
.............................................................................................................................CGGTGCGCCCCGGGC..............................................................................................................1521.501.50-------------------------------------------0.500.50---------0.50------------------
.......................................TGGCGGAGCAGGTAGAC..................................................................................................................................................................................................171.000.00-1.00-----------------------------------------------------------------------
.................................................................................................................................................................CCCCAGCGGAGGTGCAGGA......................................................................191.000.00------------------1.00------------------------------------------------------
.......................................TGGCGGAGCAGGTAGA...................................................................................................................................................................................................161.000.00-1.00-----------------------------------------------------------------------
..............................................................................................................GGCCACGGGCGCGCCGC...........................................................................................................................171.000.00--------------------1.00----------------------------------------------------
............................................................................................................................CCGGTGCGCCCCGGGCGGGT..........................................................................................................201.000.00----------------------1.00--------------------------------------------------
..............................................................................................................................GGTGCGCCCCGGGCGGGGC.........................................................................................................191.000.001.00------------------------------------------------------------------------
..............................................................................................................................GGTGCGCCCCGGGCGAGT..........................................................................................................181.000.001.00------------------------------------------------------------------------
............................................................................................................................CCGGTGCGCCCCGGG...............................................................................................................1511.001.00----1.00--------------------------------------------------------------------
...........................GCAGGGAGGAGGTGGCTCAG...........................................................................................................................................................................................................201.000.00---------------------------------1.00---------------------------------------
.............................................................................................................................CGGTGCGCCCCGGGCGGGT..........................................................................................................191.000.00---------------------------1.00---------------------------------------------
...........................................................................................................................CCCGGTGCGCCCCGGGCGTG...........................................................................................................201.000.00---------1.00---------------------------------------------------------------
..............................................................................................................................GGTGCGCCCCGGGCGGGCC.........................................................................................................191.000.001.00------------------------------------------------------------------------
...............................GGAGGAGGTGGCGGAGGGC........................................................................................................................................................................................................191.000.00----------------1.00--------------------------------------------------------
...........................................................................................................................CCCGGTGCGCCCCGGGCGGG...........................................................................................................201.000.00--------1.00----------------------------------------------------------------
..........................................................................................................................................GCGCAGCGCGCACGTCTAG.............................................................................................191.000.00-----1.00-------------------------------------------------------------------
........TCTACAGCCCCGGAGCTC................................................................................................................................................................................................................................181.000.00------1.00------------------------------------------------------------------
..............................................................................................................................................................GACCCCCAGCGGAGGTAGCA........................................................................201.000.00------1.00------------------------------------------------------------------
.........................CCGCAGGGAGGAGGTGGC...............................................................................................................................................................................................................1820.500.50----------------------------------------------------0.50--------------------
..........................CGCAGGGAGGAGGTGGC...............................................................................................................................................................................................................1750.200.20------------------------------------------------------------------------0.20

Antisense strand
AGTAGCCGTCTACAGCCCCGGAGCGCCGCAGGGAGGAGGTGGCGGAGCAGGTAGGTGGGCGACCGCCCCGGGCTCCCCAAGCGTGCTGCCAGGGCGAGGCCGCAAGACGCGGCCACGGGCGCGCCCGGTGCGCCCCGGGCGCAGCGCGCACGTTTGGAGACCCCCAGCGGAGGTGCGGGTCCCAGGAGTTTGGGAGAGCGGAAAACCCCGCCCTGGGGCTCGAGGTCTAGTGCAGCCTCCGCTGGAGTCC
..........................................................................................................................((.((.((((((...)))))).)).)).....(((.(((((...((....))..))))))))..................................................................
.........................................................................................................................122...........................................................184................................................................
SizePerfect hitTotal NormPerfect NormSRR040037(GSM532922)
G243T. (cervix)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR040039(GSM532924)
G531T. (cervix)
SRR040007(GSM532892)
G601T. (cervix)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189782TAX577742(Rovira)
total RNA. (breast)
TAX577744(Rovira)
total RNA. (breast)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
GSM416733(GSM416733)
HEK293. (cell line)
SRR037931(GSM510469)
293GFP. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
TAX577588(Rovira)
total RNA. (breast)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040029(GSM532914)
G026T. (cervix)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
GSM532890(GSM532890)
G576T. (cervix)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191559(GSM715669)
65genomic small RNA (size selected RNA from t. (breast)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR040035(GSM532920)
G001T. (cervix)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR029129(GSM416758)
SW480. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...........................................................................................................CGCGGCCACGGGCGCGGC............................................................................................................................. 187.000.00----------1.00-0.501.501.50----------------------0.50----0.50----0.500.500.50-----------------------
...........................................................................................................GCGCCCGTGGCCGCG................................................................................................................................ 1543.003.00-----------0.25---0.50------------------0.250.250.25---0.25----------------0.25-0.25-0.25-0.25-0.25-------
...........................................................................................................CGCGGCCACGGGCGCGG.............................................................................................................................. 173.000.00-----------0.50---0.50---------------0.50---0.50---0.50-0.50-------------------------------
...........................................................................................................CGCGGCCACGGGCGCGGCGC........................................................................................................................... 202.500.00----0.50-----1.00----------------------------------0.50-------0.50-------------------
...........................................................................................................CGCGGCCACGGGCGCG............................................................................................................................... 161.750.00---------------0.25--------------------0.50---0.25-------------------0.25---0.25----0.25---
...........................................................................................................CGCGCCCGTGGCCGCG............................................................................................................................... 1621.501.50----0.50-----------------------------0.50---0.50----------------------------------
...........................................................................................................CGCGGCCACGGGCGCGC.............................................................................................................................. 171.500.00-------------------------------0.25-----------------------0.250.25-----0.25-------0.250.25-
...........................................................................................................CGCGGCCACGGGCGCGCG............................................................................................................................. 181.250.00-------------------------------0.25--------------------------0.25-------0.250.250.25----
..............................................................................................................................................................................................................................CGGAGGCTGCACTAGACCT......... 1911.001.00-----------------------------1.00-------------------------------------------
....TGCGGCGCTCCGGGGCTGTAGACGGC............................................................................................................................................................................................................................ 2611.001.00----------------------------1.00--------------------------------------------
..........................................................................................................CGCCCGTGGCCGCGT................................................................................................................................. 1511.001.00------------------------1.00------------------------------------------------
..............................................................CCGCCCCGGGCTCCCCACA......................................................................................................................................................................... 191.000.00--------------------------1.00----------------------------------------------
.....CCGTCTACAGCCCCGGC.................................................................................................................................................................................................................................... 171.000.00--------1.00----------------------------------------------------------------
....CTGCGGCGCTCCGGGGCTGTAGACGGC........................................................................................................................................................................................................................... 2711.001.00-----------------1.00-------------------------------------------------------
...........................................................................................................................................................................................GTTTGGGAGAGCGGAAGA............................................. 181.000.00-------1.00-----------------------------------------------------------------
...........................................................................................................CGCGGCCACGGGCGCGGCG............................................................................................................................ 191.000.00----0.50----------------------------------------------0.50---------------------
..............................................................................................................................................................................................TGGGAGAGCGGAAAAGGG.......................................... 181.000.00-------1.00-----------------------------------------------------------------
...........................................................................................................................................................................................................................................CCTCCGCTGGAGTCCAGCT 191.000.00---------------------1.00---------------------------------------------------
....CCTGCGGCGCTCCGGGGCTGTAGACGGC.......................................................................................................................................................................................................................... 2811.001.00-----------------------1.00-------------------------------------------------
..............................................................CCGCCCCGGGCTCCCCCG.......................................................................................................................................................................... 181.000.00-------------------------1.00-----------------------------------------------
......................................................................................................................................................................GCGGAGGTGCGGGTCGGG.................................................................. 181.000.00-------------------1.00-----------------------------------------------------
..................................................................................................................................CGCGCTGCGCCCGGGGCG...................................................................................................... 1811.001.00------------1.00------------------------------------------------------------
............................................................................CCAAGCGTGCTGCCAACTG........................................................................................................................................................... 191.000.00-----1.00-------------------------------------------------------------------
..........................................................................................................................................................................................................................................GCCTCCGCTGGAGTCCA 171.000.00---------1.00---------------------------------------------------------------
...........................................................................................................CGCGGCCACGGGCGCGGA............................................................................................................................. 180.500.00----------------------------------------------0.50--------------------------
...........................................................................................................CGCGGCCACGGGCGCGGTGC........................................................................................................................... 200.500.00--------------------------------------------------0.50----------------------