ID: uc003dmg.2_intron_7_0_chr3_64527647_r.3p
GENE: (32)
chr3:64527597-64527846-


(3)
B-CELL
(2)
BRAIN
(6)
BREAST
(15)
CELL-LINE
(1)
CERVIX
(3)
FIBROBLAST
(6)
HEART
(1)
KIDNEY
(2)
LIVER
(1)
OTHER
(35)
SKIN
(1)
TESTES
(4)
UTERUS
(1)
XRN.ip

Sense strand
TGAACATGAATCTATAAAGCTTACCACAGGGACTGGCCCATAGTAAGTGCTCAGTAAATGTCAGCTTTTTGTATTCAGCGACACAGGGTCTGAAGTGACACCCTGTACATGATGACATCAGGGCTCTGAGCTCCACACCACCAGAAGCCTATGCCTCCCACATTCCATAGCCACACCGCTGACTCTCATTTGTCTTACAGTGCTCAGTGTCTTGTGGTGTTGGAGTGATGCAGAGATCTGTGCAATGTTT
..............................................................((((((.(((..(((.....(((((((..........)))))))...)))..)))..)))))).............................................................................................................................
..................................................51........................................................................125...........................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037935(GSM510473)
293cand3. (cell line)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577744(Rovira)
total RNA. (breast)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189787SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189782SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577588(Rovira)
total RNA. (breast)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577746(Rovira)
total RNA. (breast)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577739(Rovira)
total RNA. (breast)
SRR040039(GSM532924)
G531T. (cervix)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR037938(GSM510476)
293Red. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR553576(SRX182782)
source: Testis. (testes)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
........................................................................................................GTACATGATGACATCAGGGCTCTGAGC.......................................................................................................................27189.0089.00-8.00--5.007.002.006.003.001.005.002.002.002.00-2.001.002.003.001.002.001.00--1.00-1.001.00--1.001.00-2.002.001.001.001.002.001.001.00-1.00--1.00--1.00--1.00-1.001.00------1.001.001.00--1.00--1.00-1.001.001.001.001.001.00---1.00--
.......................................................................................................TGTACATGATGACATCAGGGCTCTGAGC.......................................................................................................................28176.0076.00-5.009.001.001.00-4.00-3.00--3.003.003.004.001.002.001.00-2.001.00-3.00-2.001.001.001.00-1.001.001.002.00--1.001.001.00-1.001.001.001.002.00--1.001.00-1.001.00-1.00--1.00-1.001.001.00-----1.00-----------1.00-----
......................................................................................................CTGTACATGATGACA.....................................................................................................................................15420.5020.5020.50----------------------------------------------------------------------------------
........................................................................................................GTACATGATGACATCAG.................................................................................................................................1717.007.00---4.00-----3.00-------------------------------------------------------------------------
........................................................................................................GTACATGATGACATCTGG................................................................................................................................185.000.00-------------------------1.00------------------1.00---------------1.00------1.00----------1.00----
.......................................................................................................TGTACATGATGACATCAG.................................................................................................................................1813.003.00---------1.00-----------2.00-------------------------------------------------------------
........................................................................................................GTACATGATGACATCAGG................................................................................................................................1813.003.00---1.00-------------------2.00-----------------------------------------------------------
........................................................................................................GTACATGATGACATCTGGC...............................................................................................................................192.000.00----------------------------------------------------------------1.00----------------1.00-
.........................................................ATGTCAGCTTTTTGTATGAA.............................................................................................................................................................................201.000.00--------------------------------------------------------1.00--------------------------
.......................................................................................................TGTACATGATGACATCAGG................................................................................................................................1911.001.00-----------------------1.00-----------------------------------------------------------
....................................................................................................................................................................................................................TGTGGTGTTGGAGTGAGGAG..................201.000.00-----------------------------1.00-----------------------------------------------------
........................................................................................................GTACATGATGACATCAGGGCTCTGAGCT......................................................................................................................2811.001.00-----------------------------------------1.00-----------------------------------------
.............................................................................................................................................................................................................................GGAGTGATGCAGAGATCTGTGCAA.....2411.001.00-------------------------------------------------------------------------------1.00---
.......................................................................................................TGTACATGATGACATCA..................................................................................................................................1711.001.00---1.00-------------------------------------------------------------------------------
.....................................................................................................................................................................................................CAGTGCTCAGTGTCTCGG...................................181.000.00--------------------------------------------------------------------1.00--------------
.......................................................................................................TGTACATGATGACATCAGGGCTCTGAG........................................................................................................................2711.001.00----1.00------------------------------------------------------------------------------
................................................................................................................TGACATCAGGGCTCTGAGC.......................................................................................................................1911.001.00---------------1.00-------------------------------------------------------------------
....................................................................................................................................................................................................................TGTGGTGTTGGAGTGATGGGGT................221.000.00-------------------------1.00---------------------------------------------------------
........................................................................................................GTACATGATGACATCAGGGCTCTGAG........................................................................................................................2611.001.00---1.00-------------------------------------------------------------------------------

Antisense strand
TGAACATGAATCTATAAAGCTTACCACAGGGACTGGCCCATAGTAAGTGCTCAGTAAATGTCAGCTTTTTGTATTCAGCGACACAGGGTCTGAAGTGACACCCTGTACATGATGACATCAGGGCTCTGAGCTCCACACCACCAGAAGCCTATGCCTCCCACATTCCATAGCCACACCGCTGACTCTCATTTGTCTTACAGTGCTCAGTGTCTTGTGGTGTTGGAGTGATGCAGAGATCTGTGCAATGTTT
..............................................................((((((.(((..(((.....(((((((..........)))))))...)))..)))..)))))).............................................................................................................................
..................................................51........................................................................125...........................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037935(GSM510473)
293cand3. (cell line)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577744(Rovira)
total RNA. (breast)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189787SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189782SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577588(Rovira)
total RNA. (breast)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577746(Rovira)
total RNA. (breast)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577739(Rovira)
total RNA. (breast)
SRR040039(GSM532924)
G531T. (cervix)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR037938(GSM510476)
293Red. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR553576(SRX182782)
source: Testis. (testes)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
............................................................................AGCGACACAGGGTCTAGG............................................................................................................................................................ 181.000.00----------------------------1.00------------------------------------------------------
...................................................................................................................................................CCTATGCCTCCCACAATTC.................................................................................... 191.000.00----------------------------------------------------------------------1.00------------
......................................................................................................................................................................................................AGTGCTCAGTGTCTTTCG.................................. 181.000.00----------------------------1.00------------------------------------------------------
.................................TGAGCACTTACTATGGGCCA..................................................................................................................................................................................................... 2060.170.17----------------------------------------------------------------------------------0.17