ID: uc003dix.3_intron_4_0_chr3_57570192_r.5p
GENE: (1)
chr3:57582601-57582850-


(2)
AGO2.ip
(2)
B-CELL
(1)
BRAIN
(3)
BREAST
(21)
CELL-LINE
(8)
CERVIX
(7)
HEART
(1)
KIDNEY
(3)
LIVER
(1)
OTHER
(1)
RRP40.ip
(24)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
CTCCCTCTTCTCCCGACTATTTGGCAAGAAGCAGATGCGCATTTTGATGGGTGAGTGAGGGGCTGCGAGTCAGGCGGGACCTGGGAAAGGCAGGGTCTCCACAATTGGGGTGGCCTCTGGGCCTGTTTTTTTCCTCCGCCCGCTGTGGTGGGGGAGGGGCGCCGGGTCGGGGGTCGGAAGGAATTCTTAAGGGGGAACAATGGAGCGGAGGGTGAGCGATCCCCCCCGCCCCCGATCTGTCGCCAGACGA
.....................................................................((.(((..(((((((...((((.(((((.((........)).)))))....))))......(((((((.(((((....))))))))))))..)))))))....))).))........................................................................
....................................................................69................................................................................................................183.................................................................
SizePerfect hitTotal NormPerfect NormSRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR444068(SRX128916)
Sample 25cDNABarcode: AF-PP-341: ACG CTC TTC . (cell line)
SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
TAX577746(Rovira)
total RNA. (breast)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR040028(GSM532913)
G026N. (cervix)
GSM532871(GSM532871)
G652N. (cervix)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
GSM532884(GSM532884)
G871T. (cervix)
TAX577590(Rovira)
total RNA. (breast)
SRR037938(GSM510476)
293Red. (cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR029130(GSM416759)
DLD2. (cell line)
GSM532882(GSM532882)
G696T. (cervix)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR040024(GSM532909)
G613N. (cervix)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
SRR040015(GSM532900)
G623T. (cervix)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR444070(SRX128918)
Sample 27_4cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040009(GSM532894)
G727T. (cervix)
GSM532876(GSM532876)
G547T. (cervix)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR444063(SRX128911)
Sample 20cDNABarcode: AF-PP-333: ACG CTC TTC . (cell line)
..................................................................................................................................................................CGGGTCGGGGGTCGGGG.......................................................................17210.002.00---1.00-----1.001.00-----1.00-1.00---------1.00------1.00---------1.001.00---1.00---------------------
..................................................................................................................................................................CGGGTCGGGGGTCGGG........................................................................1627.002.004.00--1.00------1.00------------------------------------------------1.00------------
..................................................................................................................................................................CGGGTCGGGGGTCGGGGC......................................................................1825.002.00--------1.001.00---1.00---1.00---------1.00--------------------------------------------
..............................................................................................................................................................GCGCCGGGTCGGGGGG............................................................................1635.001.332.00--1.00---------------1.00-1.00--------------------------------------------------
............................................................................................................................................................................GTCGGAAGGAATTCTTAAGGGGG.......................................................2314.004.00-4.00----------------------------------------------------------------------
..................................................................................................................................................................CGGGTCGGGGGTCGGGGCG.....................................................................1923.002.00------------2.00-------------------------------1.00---------------------------
.........................................................................GCGGGACCTGGGAAAGGCAG.............................................................................................................................................................2012.002.00--2.00---------------------------------------------------------------------
..................................................................................................................................................................CGGGTCGGGGGTCGG.........................................................................1522.002.00--------------0.500.500.500.50------------------------------------------------------
................................................GGGTGAGTGAGGGGCTG.........................................................................................................................................................................................1762.002.00------2.00-----------------------------------------------------------------
.................TATTTGGCAAGAAGCAGATGCGCA.................................................................................................................................................................................................................2412.002.00--------------------------------1.00------------------------1.00--------------
..............................................................................................................................................................GCGCCGGGTCGGGGGGC...........................................................................1732.001.33---------------1.00----------------------------------------1.00---------------
..............................................................................................................................................................GCGCCGGGTCGGGGG.............................................................................1531.331.330.67-----------------0.330.33----------------------------------------------------
............................................................................................................................................................GGGCGCCGGGTCGGGG..............................................................................1621.001.00--------------------------1.00---------------------------------------------
...........................................................................................................................................................GGGGCGCCGGGTCGGGGCG............................................................................191.000.00----------------------1.00-------------------------------------------------
.........................................................................GCGGGACCTGGGAAAGGC...............................................................................................................................................................1811.001.00-----------------------------------------------1.00------------------------
...............................................................................................................................................................CGCCGGGTCGGGGGTCGGAAGG.....................................................................2211.001.00-----------1.00------------------------------------------------------------
..............................................................................................................................................................GCGCCGGGTCGGGGGGCGG.........................................................................1931.001.33------------------------1.00-----------------------------------------------
.............................................................................................................................................GCTGTGGTGGGGGAGG.............................................................................................1601.001.00---------------------------------------------------1.00--------------------
........................................ATTTTGATGGGTGAGTGAGGGGCTGCGAGTCAG.................................................................................................................................................................................3311.001.00-------------------------------1.00----------------------------------------
............................................................................................................................................................GGGCGCCGGGTCGGGGCG............................................................................1821.001.00--------------1.00---------------------------------------------------------
..........................................................................................................................................................AGGGGCGCCGGGTCGGGGGTCGGAAGG.....................................................................2711.001.00--------------------------------------1.00---------------------------------
.............CGACTATTTGGCAAGAAGCAGATGGGCA.................................................................................................................................................................................................................281.000.00-----------------------1.00------------------------------------------------
....................TTGGCAAGAAGCAGATGCGC..................................................................................................................................................................................................................2011.001.00-------------------------------------------------------1.00----------------
...........CCCGACTATTTGGCAAGAAGC..........................................................................................................................................................................................................................2111.001.00-1.00----------------------------------------------------------------------
.............................................................................................................................................................GGCGCCGGGTCGGGGGGCGG.........................................................................201.000.00----------------------------------1.00-------------------------------------
....................................GCGCATTTTGATGGGTGAGTGAGGGGC...........................................................................................................................................................................................2711.001.00----------------------------------------1.00-------------------------------
......................................................................................................................................................................................................................................CCCGATCTGTCGCCA.....1511.001.00-----------------------------1.00------------------------------------------
....................................................................................................ACAATTGGGGTGGCCTCTGG..................................................................................................................................2011.001.00-------------------------------------------------1.00----------------------
......CTTCTCCCGACTATTTGGC.................................................................................................................................................................................................................................1911.001.00--------1.00---------------------------------------------------------------
.................................................................................................................................................................CCGGGTCGGGGGTCGGGGCG.....................................................................201.000.00------------------------------------------1.00-----------------------------
..............GACTATTTGGCAAGAAGCAGATGCGCAT................................................................................................................................................................................................................2811.001.00------------------------------------1.00-----------------------------------
.................................................................................................................................................TGGTGGGGGAGGGGCGCCGGGTCGGGGGTCGG.........................................................................3211.001.00----1.00-------------------------------------------------------------------
..............GACTATTTGGCAAGAAGCAGA.......................................................................................................................................................................................................................2111.001.00------------------------------------------------------1.00-----------------
...................TTTGGCAAGAAGCAGATGCGCATT...............................................................................................................................................................................................................2411.001.00-------------------------------------------1.00----------------------------
............................................................................................................................................................................................AAGGGGGAACAATGGAGCGGAGGG......................................2411.001.00--------------------------------------------------------------1.00---------
..................................................................................................................................................................CGGGTCGGGGGTCGGAAG......................................................................1811.001.00-----------1.00------------------------------------------------------------
................................................................................................CTCCACAATTGGGGTGG.........................................................................................................................................1711.001.00---------------------------------1.00--------------------------------------
.......................................................................................................................................................................................................ATGGAGCGGAGGGTGAGCGA...............................2011.001.00----------------------------------------------------1.00-------------------
..................ATTTGGCAAGAAGCAGATGCGCA.................................................................................................................................................................................................................2311.001.00----------------------------------------------------------1.00-------------
...................TTTGGCAAGAAGCAGATGCGC..................................................................................................................................................................................................................2111.001.00-----------------------------------------------------1.00------------------
..................................ATGCGCATTTTGATGGTTGG....................................................................................................................................................................................................201.000.00-------------------------------------1.00----------------------------------
....................................................................GTCAGGCGGGACCTGGGAAAGGCAGGGT..........................................................................................................................................................2811.001.00-1.00----------------------------------------------------------------------
...................TTTGGCAAGAAGCAGATGCG...................................................................................................................................................................................................................2011.001.00--1.00---------------------------------------------------------------------
............................................................................................................................................................GGGCGCCGGGTCGGG...............................................................................1540.750.75---------------------------------------------------------------0.75--------
.............................................................................................................................................................GGCGCCGGGTCGGGG..............................................................................1560.500.50--------------0.33-----0.17---------------------------------------------------
...................................TGCGCATTTTGATGG........................................................................................................................................................................................................1520.500.50----0.50-------------------------------------------------------------------
.................................................................................................................CCTCTGGGCCTGTTTTT........................................................................................................................1740.250.25-------------------------------------------------------------------0.25----
...........................................................................GGGACCTGGGAAAGGC...............................................................................................................................................................1680.250.25-----------------------------------------------------------------0.25------
....................TTGGCAAGAAGCAGAT......................................................................................................................................................................................................................1640.250.25------------------------------------------------------------------0.25-----
.............................................................................................................................................................GGCGCCGGGTCGGGGCGGC..........................................................................1960.170.50--------------------------------------------------------------------0.17---

Antisense strand
CTCCCTCTTCTCCCGACTATTTGGCAAGAAGCAGATGCGCATTTTGATGGGTGAGTGAGGGGCTGCGAGTCAGGCGGGACCTGGGAAAGGCAGGGTCTCCACAATTGGGGTGGCCTCTGGGCCTGTTTTTTTCCTCCGCCCGCTGTGGTGGGGGAGGGGCGCCGGGTCGGGGGTCGGAAGGAATTCTTAAGGGGGAACAATGGAGCGGAGGGTGAGCGATCCCCCCCGCCCCCGATCTGTCGCCAGACGA
.....................................................................((.(((..(((((((...((((.(((((.((........)).)))))....))))......(((((((.(((((....))))))))))))..)))))))....))).))........................................................................
....................................................................69................................................................................................................183.................................................................
SizePerfect hitTotal NormPerfect NormSRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR444068(SRX128916)
Sample 25cDNABarcode: AF-PP-341: ACG CTC TTC . (cell line)
SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
TAX577746(Rovira)
total RNA. (breast)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR040028(GSM532913)
G026N. (cervix)
GSM532871(GSM532871)
G652N. (cervix)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
GSM532884(GSM532884)
G871T. (cervix)
TAX577590(Rovira)
total RNA. (breast)
SRR037938(GSM510476)
293Red. (cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR029130(GSM416759)
DLD2. (cell line)
GSM532882(GSM532882)
G696T. (cervix)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR040024(GSM532909)
G613N. (cervix)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
SRR040015(GSM532900)
G623T. (cervix)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR444070(SRX128918)
Sample 27_4cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040009(GSM532894)
G727T. (cervix)
GSM532876(GSM532876)
G547T. (cervix)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR444063(SRX128911)
Sample 20cDNABarcode: AF-PP-333: ACG CTC TTC . (cell line)
...............................................................................................................................CGGGCGGAGGAAAAA............................................................................................................ 1512.002.00-----2.00------------------------------------------------------------------
.............................................................................................................................TTTTTTTCCTCCGCCCGCAAA........................................................................................................ 211.000.00--1.00---------------------------------------------------------------------
...........................................................................................................................................................................................................................TCCCCCCCGCCCCCGATAGGG.......... 211.000.00----1.00-------------------------------------------------------------------
.TGCCAAATAGTCGGGAGAAGAGGGA................................................................................................................................................................................................................................ 2511.001.00--------------------1.00---------------------------------------------------
..................................................................................................................................................................................................................................TCTGGCGACAGATCGGGGGCG... 2111.001.00---------------------------------------1.00--------------------------------
.............................................................................................................................................................GGCGCCGGGTCGGGGGTG........................................................................... 181.000.00-------1.00----------------------------------------------------------------
...........................................................................................................................CGGGCGGAGGAAAAAAACA............................................................................................................ 1911.001.00-----------------------------------------1.00------------------------------
............................................................................................................................................................GGGCGCCGGGTCGGGGGCC........................................................................... 1941.000.00-------------1.00----------------------------------------------------------
.............................................................................................................................TTTTTTTCCTCCGCCCGA........................................................................................................... 181.000.00-------------------------------------------------------------1.00----------
...............................................................................................................................................................CGCCGGGTCGGGGGTCG.......................................................................... 171.000.00-------1.00----------------------------------------------------------------
.............................................................................................................................................................GGCGCCGGGTCGGGGGTCGC......................................................................... 201.000.00------------------------------1.00-----------------------------------------
.............................................................................................................................TTTTTTTCCTCCGCCCGAAA......................................................................................................... 201.000.00-------------------------1.00----------------------------------------------
...........................................................................................................................TGTTTTTTTCCTCCGA............................................................................................................... 161.000.00------------------------------------------------1.00-----------------------
.........................................TTTTGATGGGTGAGTAAGA.............................................................................................................................................................................................. 191.000.00------------------------------------------------------------1.00-----------
.............................................................................................................................TTTTTTTCCTCCGCCAC............................................................................................................ 170.290.00----------------------------------------------------------------0.29-------
............................................................................................................................GCGGAGGAAAAAAAC............................................................................................................... 1560.170.17----------------------------------------------------------------0.17-------
.............................................................................................................................TTTTTTTCCTCCGCCGAAA.......................................................................................................... 190.140.00---------------------------------------------------------------------0.14--
............................................................................................................................................................................................................................ATCGGGGGCGGGGGGG.............. 1670.140.14-----------------------------------------------------------------------0.14
............................................................................................................................................................................................................................CCCCCCCGCCCCCGATTGC........... 190.140.00----------------------------------------------------------------------0.14-
.............................................................................................................................GGCGGAGGAAAAAAA.............................................................................................................. 1570.140.14---------------------0.14--------------------------------------------------