ID: uc003dif.2_intron_8_0_chr3_56807845_r.3p
GENE: ARHGEF3(1)
chr3:56807795-56808044-


(1)
BRAIN 		(1)
BREAST 		(7)
CELL-LINE 		(1)
CERVIX 		(1)
OTHER 		(1)
SKIN

Sense strand
ATCCCCTGCCTGCCATTTCTCCTTCCCTGCCTCCTAAGCCAGGTCATCTCCATACAGCCAGAGTGAGACGTGACACTTTATATTCCATAGATCAGTGTACAACCAGTACCTTGTGGAGTGGAACACAGTTGTATGATGGAGTTATGTTGTCTTTGCAATTGACCTTGACATTTTACTTTTTTTTTTTTTTAACTCTATAGGAGCCTAGTAATAAACGGGTCAAACCCCTTTCCCGAGTCACGTCGCTAGC
...........................................................(((((((((.((.........(((((((((....((.((((.....))))))))))))))).....((((((((.(((((.......)))))..))))))))......)).))))))))).......................................................................
.......................................................56..............................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR189785SRR040041(GSM532926)
G612T. (cervix)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189782TAX577739(Rovira)
total RNA. (breast)		SRR343335SRR189786GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..........................................................................................................................................................................TTTTACTTTTTTTTTTTTTTAAAAG.......................................................253237.000.001253.00927.00543.00413.0097.002.00--2.00--------
...........................................................................................................................................................................TTTACTTTTTTTTTTTTTTAAAAG.......................................................24344.000.00100.00128.0080.0032.003.00--------1.00---
..........................................................................................................................................................................TTTTACTTTTTTTTTTTTTTAAAAT.......................................................25232.000.0083.0079.0034.0034.002.00------------
..........................................................................................................................................................................TTTTACTTTTTTTTTTTTTTAAAAAG......................................................26198.000.0090.0065.0021.0010.0010.001.00--1.00--------
...........................................................................................................................................................................TTTACTTTTTTTTTTTTTTAAAAT.......................................................2424.000.005.0014.002.003.00-------------
..........................................................................................................................................................................TTTTACTTTTTTTTTTTTTTAAATT.......................................................2516.000.007.007.001.001.00-------------
..........................................................................................................................................................................TTTTACTTTTTTTTTTTTTTAAATG.......................................................2513.000.008.002.001.002.00-------------
..........................................................................................................................................................................TTTTACTTTTTTTTTTTTTTAAAAAT......................................................2610.000.003.003.001.003.00-------------
.........................................................................................................................................................................ATTTTACTTTTTTTTTTAAG.............................................................209.000.004.002.003.00--------------
........................................................................................................................................................................CATTTTACTTTTTTTTTTAG..............................................................208.000.002.00-5.001.00-------------
........................................................................................................................................................................CATTTTACTTTTTTTTTTTTCTG...........................................................238.000.003.001.003.001.00-------------
..........................................................................................................................................................................TTTTACTTTTTTTTTTTTTTAAAAC.......................................................257.000.003.001.002.00-1.00------------
..........................................................................................................................................................................TTTTACTTTTTTTTTTTTTTAGAAG.......................................................257.000.002.002.002.001.00-------------
........................................................................................................................................................................CATTTTACTTTTTTTTTTTTTTCTG.........................................................257.000.002.00-3.002.00-------------
..........................................................................................................................................................................TTTTACTTTTTTTTTTTTTTAAAAGG......................................................265.000.001.001.003.00--------------
..........................................................................................................................................................................TTTTACTTTTTTTTTTTTTTATAAG.......................................................255.000.001.002.00-1.001.00------------
........................................................................................................................................................................CATTTTACTTTTTTTTTTTCTG............................................................225.000.002.00-3.00--------------
..........................................................................................................................................................................TTTTACTTTTTTTTTTTTTTAATAT.......................................................255.000.001.002.00-2.00-------------
..........................................................................................................................................................................TTTTACTTTTTTTTTTTTTTACAAG.......................................................255.000.00--3.002.00-------------
..........................................................................................................................................................................TTTTACTTTTTTTTTTTTTTATATG.......................................................254.000.002.002.00---------------
..........................................................................................................................................................................TTTTACTTTTTTTTTTTTTTAAACG.......................................................254.000.003.00-1.00--------------
..........................................................................................................................................................................TTTTACTTTTTTTTTTTTTTAAAAGC......................................................264.000.00----1.003.00-----------
..........................................................................................................................................................................TTTTACTTTTTTTTTTTTTTAAAATG......................................................264.000.002.001.001.00--------------
........................................................................................................................................................................CATTTTACTTTTTTTTTTTTTCAG..........................................................243.000.00--2.001.00-------------
........................................................................................................................................................................CATTTTACTTTTTTTTTTTTTCTG..........................................................243.000.001.00--2.00-------------
........................................................................................................................................................................CATTTTACTTTTTTTTTTTCTAG...........................................................233.000.00--2.001.00-------------
........................................................................................................................................................................CATTTTACTTTTTTTTTTTTCTAG..........................................................243.000.00--2.001.00-------------
...............................................................................................................................................................................CTTTTTTTTTTTTTTAACTCTAG....................................................233.000.001.001.001.00--------------
........................................................................................................................................................................CATTTTACTTTTTTTTTTTTTCTAG.........................................................253.000.00--2.001.00-------------
..........................................................................................................................................................................TTTTACTTTTTTTTTTTTTTATG.........................................................232.000.001.00-1.00--------------
.......................................................................................................................................................................ACATTTTACTTTTTTTTTTTTG.............................................................222.000.001.001.00---------------
.........................................................................................................................................................................ATTTTACTTTTTTTTTTTTTTAAATG.......................................................262.000.001.00--1.00-------------
..............................................................................................................................................................................ACTTTTTTTTTTTTTTAACTGCAG....................................................242.000.00-----2.00-----------
..........................................................................................................................................................................TTTTACTTTTTTTTTTTTTTAAAAGT......................................................262.000.001.00--1.00-------------
..............................................................................................................................................................................ACTTTTTTTTTTTTTTAACTCGGC....................................................242.000.00-----2.00-----------
............................................................................................................................................................................TTACTTTTTTTTTTTTTTACAGG.......................................................232.000.00-----2.00-----------
.........................................................................................................................................................................ATTTTACTTTTTTTTTTTTTTAAAAAG......................................................272.000.001.00--1.00-------------
..........................................................................................................................................................................TTTTACTTTTTTTTTTTTTTAATTAG......................................................262.000.001.00-1.00--------------
.........................................................................................................................................................................ATTTTACTTTTTTTTTTTTTTCTCG........................................................252.000.00-----2.00-----------
.......................................................................................................................................................................ACATTTTACTTTTTTTTTTTG..............................................................212.000.00--1.001.00-------------
..........................................................................................................................................................................TTTTACTTTTTTTTTTTTTTATAAT.......................................................252.000.001.001.00---------------
..........................................................................................................................................................................TTTTACTTTTTTTTTTTTTTAAACT.......................................................252.000.00-1.00-1.00-------------
..............................................................................................................................................................................ACTTTTTTTTTTTTTTAACTCTGGG...................................................252.000.00-----2.00-----------
............................................................................................................................................................................TTACTTTTTTTTTTTTTTACG.........................................................212.000.001.001.00---------------
...........................................................................................................................................................................TTTACTTTTTTTTTTTTTTAACAAG......................................................251.000.00-1.00---------------
........................................................................................................................................................................CATTTTACTTTTTTTTTTTAATG...........................................................231.000.001.00----------------
.........................................................................................................................................................................ATTTTACTTTTTTTTTTTTTCCG..........................................................231.000.00--1.00--------------
.......................................................................................................................................................................ACATTTTACTTTTTTTTTTTTTTAACTCTATA...................................................3211.001.001.00----------------
.......................................................................................................................................................................ACATTTTACTTTTTTTTTTTTTTGGAA........................................................271.000.00-----1.00-----------
..........................................................................................................................................................................TTTTACTTTTTTTTTTTTTTACTTT.......................................................251.000.00------1.00----------
..........................................................................................................................................................................TTTTACTTTTTTTTTTTTTTAACG........................................................241.000.001.00----------------
................................................................................................................................................................................................................................CCCCTTTCCCGAGTCACGT.......1911.001.00----------------1.00
.................................................................................................................................................................................TTTTTTTTTTTTTAACTCGGC....................................................211.000.00-----1.00-----------
........................................................................................................................................................................CATTTTACTTTTTTTTTTTTTTCAG.........................................................251.000.00--1.00--------------
...........................................................................................................................................................................TTTACTTTTTTTTTTTTTTAGAAG.......................................................241.000.00-1.00---------------
..........................................................................................................................................................................TTTTACTTTTTTTTTTTTTCAAG.........................................................231.000.00--1.00--------------
........................................................................................................................................................................CATTTTACTTTTTTTTTTAAG.............................................................211.000.00--1.00--------------
..........................................................................................................................................................................TTTTACTTTTTTTTTTTTTTAACAAT......................................................261.000.00--1.00--------------
.........................................................................................................................................................................ATTTTACTTTTTTTTTTTTTTCATG........................................................251.000.001.00----------------
...................................................................................................................................................................................................................................CTTTCCCGAGTCACGTC......1711.001.00----------1.00------
..............................................................................................................................................................................ACTTTTTTTTTTTTTTAACTCGG.....................................................231.000.00------1.00----------
..................................TAAGCCAGGTCATCTGGGC.....................................................................................................................................................................................................191.000.00------------1.00----
..........................................................................................................................................................................TTTTACTTTTTTTTTTTTTCACG.........................................................231.000.00--1.00--------------
.......................................................................................................................................................................ACATTTTACTTTTTTTTTTTTTTACTT........................................................271.000.00----1.00------------
..........................................................................................................................................................................TTTTACTTTTTTTTTTTTTCTAG.........................................................231.000.00---1.00-------------
............................................................................................................................................................................TTACTTTTTTTTTTTTTTATTTA.......................................................231.000.00-1.00---------------
...........................................................................................................................................................................TTTACTTTTTTTTTTTTTTAAAAGG......................................................251.000.001.00----------------
...........................................................................................................................................................................TTTACTTTTTTTTTTTTTTAAAATG......................................................251.000.00-1.00---------------
........................................................................................................................................................................CATTTTACTTTTTTTTCGG...............................................................191.000.00-----1.00-----------
...........................................................................................................................................................................TTTACTTTTTTTTTTTTTTAAAAAT......................................................251.000.00-1.00---------------
............................................................................................................................................................................TTACTTTTTTTTTTTTTTAACTG.......................................................231.000.00---1.00-------------
...........................................................................................................................................................................TTTACTTTTTTTTTTTTTTAACAGT......................................................251.000.00--1.00--------------
............................................................................................................................................................................TTACTTTTTTTTTTTTTTAACTTAG.....................................................251.000.00---1.00-------------
........................................................................................................................................................................CATTTTACTTTTTTTTTTTAT.............................................................211.000.00--1.00--------------
............................................................................................................................................................................TTACTTTTTTTTTTTTTTAACTAG......................................................241.000.001.00----------------
.........................................................................................................................................................................ATTTTACTTTTTTTTTTTTTTAGT.........................................................241.000.00--1.00--------------
................................................................................................................................................................................TTTTTTTTTTTTTTAACTCGGC....................................................221.000.00------1.00----------
................................................................................................................................................................................TTTTTTTTTTTTTTAACTCTATAGAGG...............................................271.000.00------1.00----------
.............................................................................................................................................................................TACTTTTTTTTTTTTTTATAAT.......................................................221.000.00---1.00-------------
.......................................................................................................................................................................ACATTTTACTTTTTTTTTTTTTCTT..........................................................251.000.00--1.00--------------
........................................................................................................................................................................CATTTTACTTTTTTTTTTTTTTCTAG........................................................261.000.00--1.00--------------
............................................................GAGTGAGACGTGACAAG.............................................................................................................................................................................171.000.00-------1.00---------
...............................................................................................................................................................TGACCTTGACATTTTTGTT........................................................................191.000.00----1.00------------
.........................................................................................................................................................................ATTTTACTTTTTTTTTTTTTTACATT.......................................................261.000.00-----1.00-----------
..........................................................................................................................................................................TTTTACTTTTTTTTTTTTTTATAGG.......................................................251.000.00-----1.00-----------
................................................................................................................................................................................TTTTTTTTTTTTTTAACTCGGT....................................................221.000.00------1.00----------
..............................................................................................................................................................................ACTTTTTTTTTTTTTTAACTCG......................................................221.000.001.00----------------
............CCATTTCTCCTTCCCTGCCTTCT.......................................................................................................................................................................................................................231.000.00-------1.00---------
...............................................................................................................................................................................CTTTTTTTTTTTTTTAACTCTAACCC.................................................261.000.00-1.00---------------
....................................................................................................................................................................................TTTTTTTTTTAACTCTATTCTG................................................221.000.00---1.00-------------
..........................................................................................................................................................................TTTTACTTTTTTTTTTTTTTAAATTG......................................................261.000.00--1.00--------------
............................................................................................................................................................................TTACTTTTTTTTTTTTTTATATG.......................................................231.000.001.00----------------
..........................................................................................................................................................................TTTTACTTTTTTTTTTTTTTAACTTAG.....................................................271.000.00-1.00---------------
................................................................................................................................................................................TTTTTTTTTTTTTTAACTCTACTG..................................................241.000.00--1.00--------------
..........................................................................................................................................................................TTTTACTTTTTTTTTTTTTCGTC.........................................................231.000.00-----1.00-----------
...............................................................................................................................................................................CTTTTTTTTTTTTTTAACTCACTG...................................................241.000.00---1.00-------------
.................................................................................................................TGGAGTGGAACACAGTTG.......................................................................................................................1811.001.00---------------1.00-
..........................................................................................................................................................................TTTTACTTTTTTTTTTTTTTAATGGC......................................................261.000.00-----1.00-----------
..........................................................................................................................................................................TTTTACTTTTTTTTTTTTTTAACTG.......................................................251.000.00----1.00------------
...............................................................................................................................................................................CTTTTTTTTTTTTTTAACTCTAAC...................................................241.000.00-1.00---------------
..........................................................................................................................................................................TTTTACTTTTTTTTTTTTTTAACCAAG.....................................................271.000.00---1.00-------------
..........................................................................................................................................................................TTTTACTTTTTTTTTTTTTTAAAAGA......................................................261.000.001.00----------------
............................................................................................................................................................................TTACTTTTTTTTTTTTTTAACTCCGG....................................................261.000.00-1.00---------------
.............................................................................................................................................................................TACTTTTTTTTTTTTTTATGG........................................................211.000.00-1.00---------------
........................................................................................................................................................................CATTTTACTTTTTTTTTTTCCTG...........................................................231.000.00---1.00-------------
........................................................................................................................................................................CATTTTACTTTTTTTTTAATG.............................................................211.000.00-1.00---------------
..............................................................................................................................................................................ACTTTTTTTTTTTTTTAACTCTGGC...................................................251.000.00-----1.00-----------
...............................................................................................................................................................................CTTTTTTTTTTTTTTAACTCACAG...................................................241.000.00--1.00--------------
..........................................................................................................................................................................TTTTACTTTTTTTTTTTTTTAACAT.......................................................251.000.001.00----------------
........................................................................................................................................................................CATTTTACTTTTTTTTTTTTAAG...........................................................231.000.00--1.00--------------
...........................................................................................................................................................................TTTACTTTTTTTTTTTTTTAAATGG......................................................251.000.001.00----------------
.........................................................................................................................................................................ATTTTACTTTTTTTTTTTTCGAG..........................................................231.000.00-----1.00-----------
.........................................................................CACTTTATATTCCATAATC..............................................................................................................................................................191.000.00-------1.00---------
.........................................................................................................................................................................ATTTTACTTTTTTTTTTTTTTAATG........................................................251.000.00-1.00---------------
..........................................................................................................................................................................TTTTACTTTTTTTTTTTTTTATTTG.......................................................251.000.00-1.00---------------
........................................................................................................................................................................CATTTTACTTTTTTTTTCTTG.............................................................211.000.00-----1.00-----------
.........................................................................................................................................................................ATTTTACTTTTTTTTTTTTTTAAAAG.......................................................261.000.00--1.00--------------
........................................................................................................................................................................CATTTTACTTTTTTTTTTTTTTCTA.........................................................251.000.00--1.00--------------
.......................................................................................................................................................................ACATTTTACTTTTTTTTTTTTTTG...........................................................241.000.00-1.00---------------
.........................................................................................................................................................................ATTTTACTTTTTTTTTTTCCTG...........................................................221.000.00--1.00--------------
..........................................................................................................................................................................TTTTACTTTTTTTTTTTTTTATATT.......................................................251.000.001.00----------------
.......................................................................................................................................................................ACATTTTACTTTTTTTTTTTTTGG...........................................................241.000.00----1.00------------
...........................................................................................................................................................................TTTACTTTTTTTTTTTTTTAACGG.......................................................241.000.00------1.00----------
..........................................................................................................................................................................TTTTACTTTTTTTTTTTTTTATAG........................................................241.000.00---1.00-------------
..........................................................................................................................................................................TTTTACTTTTTTTTTTTTTCCGG.........................................................231.000.00-----1.00-----------
.......................................................................................................................................................................ACATTTTACTTTTTTTTTTTTTTAACTCTATAG..................................................3311.001.001.00----------------
.........................................................................................................................................................................ATTTTACTTTTTTTTTTTTTTCAAG........................................................251.000.001.00----------------
...............................................................................................................................................................................CTTTTTTTTTTTTTTAACTCG......................................................211.000.00-1.00---------------
..........................................................................................................................................................................TTTTACTTTTTTTTTTTTTTAAACAG......................................................261.000.001.00----------------
............................................................................................................................................................................TTACTTTTTTTTTTTTTTATATA.......................................................231.000.00-1.00---------------
..........................................................................................................................................................................TTTTACTTTTTTTTTTTTTTAACAAG......................................................261.000.00--1.00--------------

Antisense strand
ATCCCCTGCCTGCCATTTCTCCTTCCCTGCCTCCTAAGCCAGGTCATCTCCATACAGCCAGAGTGAGACGTGACACTTTATATTCCATAGATCAGTGTACAACCAGTACCTTGTGGAGTGGAACACAGTTGTATGATGGAGTTATGTTGTCTTTGCAATTGACCTTGACATTTTACTTTTTTTTTTTTTTAACTCTATAGGAGCCTAGTAATAAACGGGTCAAACCCCTTTCCCGAGTCACGTCGCTAGC
...........................................................(((((((((.((.........(((((((((....((.((((.....))))))))))))))).....((((((((.(((((.......)))))..))))))))......)).))))))))).......................................................................
.......................................................56..............................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR189785SRR040041(GSM532926)
G612T. (cervix)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189782TAX577739(Rovira)
total RNA. (breast)		SRR343335SRR189786GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...........................................TCATCTCCATACAGCAGA............................................................................................................................................................................................. 182.000.00---------2.00-------
....................................................................................................AACCAGTACCTTGTGACCT................................................................................................................................... 191.000.00--------------1.00--
..........................................................................................................................................GAGTTATGTTGTCTTTTCG............................................................................................. 191.000.00-----------1.00-----
.................................................................................................................................................................................................................TTTGACCCGTTTATT.......................... 1520.500.50--0.50--------------