ID: uc003dhc.2_intron_4_0_chr3_53907155_r.5p
GENE: (8)
chr3:53908038-53908287-


(1)
AGO2.ip
(3)
B-CELL
(2)
BRAIN
(11)
CELL-LINE
(3)
HEART
(1)
HELA
(3)
LIVER
(2)
OTHER
(5)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
ATTGTCTTCTTCTGCAACACCTTAAAGAAACTTTTTGTCATTTAGATCAGGTGGGAGCAGAATCAATATTGCTGATTATTTTTGTTTCTAGGAAAAATTTAAGAGATTTAAAAGATACTTAAAAATGTAACAGCATTGGCTGGGCACGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCATGAGGTCAGGAGATCAAGACCATCCTGGCTAACACGGTGAAACTCCGTCT
...................................................(((((((((((..(((.......)))..))))))))))).......((((((..(((.....))).))))))(((((....)))))((((((((......))))).)))..........................................................................................
..................................................51............................................................................................................161.......................................................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189786SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR189787SRR189785SRR553576(SRX182782)
source: Testis. (testes)
SRR343335SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
.......................................................................................................................................TTGGCTGGGCACGGTGGCACAT.............................................................................................2224.000.0018.00-3.00--------2.001.00-----------------------
......................................................................................................................................ATTGGCTGGGCACGGTGGCACAT.............................................................................................2311.000.004.00-6.00---------1.00-----------------------
........................................................................................................................................TGGCTGGGCACGGTGGCAAG..............................................................................................204.000.004.00-----------------------------------
......................TAAAGAAACTTTTTGTCATTTAGATCAG........................................................................................................................................................................................................2813.003.00----3.00-------------------------------
....................................GTCATTTAGATCAGGACA....................................................................................................................................................................................................182.000.00---------------------1.00----1.00---------
......................................................................................................................................ATTGGCTGGGCACGGTGGCGT...............................................................................................212.000.002.00-----------------------------------
..........................................................................................................................................................................................AGGTGGGTGGATCATGAAAAA...........................................212.000.00---------2.00--------------------------
.........................................................CAGAATCAATATTGCTGATTAT...........................................................................................................................................................................2212.002.00---------------2.00--------------------
..........................................................................................................................................................................................AGGTGGGTGGATCATGAGGCAGG.........................................232.000.00-2.00----------------------------------
......................................................................................................................................ATTGGCTGGGCACGGTGGCAAA..............................................................................................222.000.00--------------2.00---------------------
.............................................................................................................................................................................................TGGGTGGATCATGAGGTCAGGTT......................................231.000.00--1.00---------------------------------
........................AAGAAACTTTTTGTCATTTAGATCAGGAC.....................................................................................................................................................................................................291.000.00----------1.00-------------------------
.............................................................................................................................................................................................TGGGTGGATCATGAGGTCAGGTCT.....................................241.000.00--1.00---------------------------------
......................................................................................................................................ATTGGCTGGGCACGGTGGCACC..............................................................................................221.000.00--------------------------------1.00---
...............................................................................................................................................................................................................AGGAGATCAAGACCATAAAA.......................201.000.00-------------------------1.00----------
............................................................................................................................................................................................GTGGGTGGATCATGAGGTCAGGAGAT....................................2601.001.00--------1.00---------------------------
..............................................TCAGGTGGGAGCAGAATCAATA......................................................................................................................................................................................2211.001.00----1.00-------------------------------
..........................................................................................................................................................................................AGGTGGGTGGATCATGAGGTCAGGAGGCC...................................291.000.00---1.00--------------------------------
.................................................................................................................................................................................................................................TGGCTAACACGGTGAAACTCCACT.241.000.00--1.00---------------------------------
.................................................................................................................................................................................................TGGATCATGAGGTCAGGC.......................................181.000.00------1.00-----------------------------
....................................................................................................................................................................................................................ATCAAGACCATCCTGGAC....................181.000.00------1.00-----------------------------
........................................................................................................................................................................................................TGAGGTCAGGAGATCAAGACCCTGG.........................251.000.00---1.00--------------------------------
................................................................................................................................................................................................................................CTGGCTAACACGGTGAAACTCAA...231.000.00----------------1.00-------------------
...................................................................................................................................AGCATTGGCTGGGCAACA.....................................................................................................181.000.00------------------------1.00-----------
............................................................................................................................................................................................GTGGGTGGATCATGAGGTCAGGAGATCACACG..............................321.000.00-------------------------------1.00----
..........................................................................................................................................................................................................................................CGGTGAAACTCCGTCCGCG191.000.00-------------------1.00----------------
..........................................................................................................................................GCTGGGCACGGTGGCTCATGGCCG........................................................................................241.000.00-1.00----------------------------------
.......................................................................................................................................................................................................................AAGACCATCCTGGCTAACACGGAT...........241.000.00-----------------------------1.00------
................................TTTTGTCATTTAGATCAG........................................................................................................................................................................................................1811.001.00------------------------------1.00-----
................................................................................................................................................................................................GTGGATCATGAGGTCAGGAGATCAAGACCC............................301.000.00------------------1.00-----------------
..........................................................................................................................................................................................AGGTGGGTGGATCATGAGGTCAGGCCC.....................................271.000.00---1.00--------------------------------
..............................................................................................................................................................................................................................TCCTGGCTAACACGGGGGG.........191.000.00---------------------------1.00--------
....................................................................................................................................................................................................................................CTAACACGGTGAAACTCACCA.211.000.001.00-----------------------------------
.........................................................................................................................................................................................GAGGTGGGTGGATCATGAGGTCGG.........................................241.000.00------1.00-----------------------------
.......................................................................................................................................................................CCAGCACTTTGGGAGGCCGAGGTGGGTTGAA....................................................311.000.00-------1.00----------------------------
........................................................................................................................................................................................CGAGGTGGGTGGATCATGAGGT............................................2201.001.00--------1.00---------------------------
......................................................................................................................................ATTGGCTGGGCACGGTGGCACT..............................................................................................221.000.00--1.00---------------------------------
.......................................................................................................................................................................................................ATGAGGTCAGGAGATCAAGACCATCCTG.......................2801.001.00----------------------------1.00-------
....................................................................................................................................................................................................ATCATGAGGTCAGGAGATCAAGACCATCGCGG......................321.000.00-1.00----------------------------------
.......................................................................................................................................TTGGCTGGGCACGGTGGCACAG.............................................................................................221.000.001.00-----------------------------------
...........................................................................................................................................................................................GGTGGGTGGATCATGAGGTCAGGAG......................................2501.001.00--------1.00---------------------------
......................................................................................................................................ATTGGCTGGGCACGGTGGCAA...............................................................................................211.000.00-----------------------1.00------------
................................TTTTGTCATTTAGATCAGGA......................................................................................................................................................................................................201.000.00----------1.00-------------------------
.................................................................................................................................................................................GGGAGGCCGAGGTGGGTGGATCATGATCG............................................291.000.00--------------------1.00---------------
............................................................................................................................................................................................GTGGGTGGATCATGAGGTCGGGT.......................................231.000.00-----------------1.00------------------
..............................................................................................................................................................................................GGGTGGATCATGAGGTCAGGAGATCTCTG...............................291.000.00-------1.00----------------------------
........................................TTTAGATCAGGTGGGA..................................................................................................................................................................................................1630.330.33-----------------------------------0.33

Antisense strand
ATTGTCTTCTTCTGCAACACCTTAAAGAAACTTTTTGTCATTTAGATCAGGTGGGAGCAGAATCAATATTGCTGATTATTTTTGTTTCTAGGAAAAATTTAAGAGATTTAAAAGATACTTAAAAATGTAACAGCATTGGCTGGGCACGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCATGAGGTCAGGAGATCAAGACCATCCTGGCTAACACGGTGAAACTCCGTCT
...................................................(((((((((((..(((.......)))..))))))))))).......((((((..(((.....))).))))))(((((....)))))((((((((......))))).)))..........................................................................................
..................................................51............................................................................................................161.......................................................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189786SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR189787SRR189785SRR553576(SRX182782)
source: Testis. (testes)
SRR343335SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
.....................................................................................................................................................................................GGCCGAGGTGGGTGGATCATCCCA............................................. 243.000.00-3.00----------------------------------
................................................................................................................................................................................................................GGAGATCAAGACCATCCTGGCTAGTCC............... 273.000.00-3.00----------------------------------
...............................................ATTGATTCTGCTCCCACCTG....................................................................................................................................................................................... 2013.003.00-----3.00------------------------------
...........................................................................................................................................................................................................GGTCAGGAGATCAAGACCATCCTGGCTAAGGTG.............. 333.000.00---3.00--------------------------------
...........CTGCAACACCTTAAATTAA............................................................................................................................................................................................................................ 192.000.002.00-----------------------------------
...........................................................................................................................................................................................................................CCATCCTGGCTAACACGGTGAAAGGGT.... 271.000.00---1.00--------------------------------
................................................................................................................................................................................................................GGAGATCAAGACCATCCTGGCTAGACA............... 271.000.00-1.00----------------------------------
................................................................................................................................................................................................................GGAGATCAAGACCATCCTGGCTAGACG............... 271.000.00-1.00----------------------------------
.....................................................................................................................................................................................GGCCGAGGTGGGTGGATCATCCAG............................................. 241.000.00-1.00----------------------------------
...........................................................................................................................................................................................................GGTCAGGAGATCAAGACCATCCTGGCTGGTG................ 311.000.00---1.00--------------------------------
.................................................................................................................................................................................................TGGATCATGAGGTCAGGAGATCTA................................. 241.000.00-----1.00------------------------------
.................................................................................................................................................................................GGGAGGCCGAGGTGGGTGGATCATGCACT............................................ 291.000.00----------------------1.00-------------
.................................................................................................................................................................................................TGGATCATGAGGTCAGGAGATCAAAG............................... 261.000.00-------------1.00----------------------
...........................................................................................................................................................................................................GGTCAGGAGATCAAGACCATCCTGGCTGG.................. 291.000.00-1.00----------------------------------
...............................................................................................................................................GCACGGTGGCTCATGCCTGTAGGGT.................................................................................. 251.000.00-------------1.00----------------------
...............................................................................................................................................GCACGGTGGCTCATGCCTGTGGCC................................................................................... 241.000.00-1.00----------------------------------
.......................................................................................................................................................................................................................AAGACCATCCTGGCTAACACGGAAAG......... 261.000.00-------1.00----------------------------
................................................................................................................................................................................................................GGAGATCAAGACCATCCTGGCTAACACGGTGAT......... 331.000.00---1.00--------------------------------
.........................................................................................................................................................................AGCACTTTGGGAGGCCGAGGTGGGTTTTC.................................................... 291.000.00---------------------------------1.00--
..........................TAAATGACAAAAAGTTTC.............................................................................................................................................................................................................. 1820.500.50----------------------------------0.50-