ID: uc003dhb.2_intron_5_0_chr3_53910108_r.5p
GENE: (2)
chr3:53910447-53910696-


(2)
AGO1.ip
(1)
AGO1.ip OTHER.mut
(3)
AGO2.ip
(1)
AGO3.ip
(3)
B-CELL
(1)
BRAIN
(2)
BREAST
(30)
CELL-LINE
(4)
HEART
(6)
HELA
(6)
LIVER
(2)
OTHER
(10)
SKIN
(1)
TESTES
(1)
UTERUS
(1)
XRN.ip

Sense strand
GCATGTGAAAGAACTAGTGAATATGATACTAATGAAGATGGGTTTTTCAGGTATGTCTGATATCCCAGTGAAACCTATTTTAAATGGAATTTTCTTTCTTTAATGACAGAGTTAATCTTATTTACTGACTTATTTATTTATTTATTTATTTGAGACAGAGTCTCTCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCTATCTCAGCTCACTGCAAGCTCCACCTCCCGGGTTCACGCCACTCTCCTGCCTC
...........................................................................................................................((((((((......................(((((((.....)))))))((....))..)))).))))...........................................................
...........................................................................................................................124................................................................191.........................................................
SizePerfect hitTotal NormPerfect NormSRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189784SRR029124(GSM416753)
HeLa. (hela)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR189785SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR343335SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR189782TAX577740(Rovira)
total RNA. (breast)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR553576(SRX182782)
source: Testis. (testes)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR189786SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR038863(GSM458546)
MM603. (cell line)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR038852(GSM458535)
QF1160MB. (cell line)
...............................................................................................................................ACTTATTTATTTATTTATTTATTTCAG................................................................................................2774.000.0035.00-10.0021.00-6.00-----2.00-----------------------------------------------------------
...............................................................................................................................ACTTATTTATTTATTTATTTATTTGGG................................................................................................276.000.00-6.00---------------------------------------------------------------------
................................................................................................................................CTTATTTATTTATTTATTTATCTAG.................................................................................................256.000.001.00-5.00--------------------------------------------------------------------
...............AGTGAATATGATACTAATGA.......................................................................................................................................................................................................................2015.005.00---------5.00-------------------------------------------------------------
................................................................................................................................CTTATTTATTTATTTATTTATTCAG.................................................................................................255.000.00--5.00--------------------------------------------------------------------
...............................................................................................................................ACTTATTTATTTATTTATTTATAA...................................................................................................244.000.001.00--3.00-------------------------------------------------------------------
................................................................................................................................CTTATTTATTTATTTATTTATTTCG.................................................................................................254.000.002.00-2.00--------------------------------------------------------------------
.....................................................................................................................................................................................................................................TTCACGCCACTCTCCTGCCTAAG234.000.00--------2.00------------------2.00-------------------------------------------
...............................................................................................................................ACTTATTTATTTATTTATTATTG....................................................................................................233.000.002.00--1.00-------------------------------------------------------------------
...............................................................................................................................ACTTATTTATTTATTTATTTATCTAG.................................................................................................263.000.001.00-2.00--------------------------------------------------------------------
................................................................................................................................CTTATTTATTTATTTATTTATTTCTTG...............................................................................................273.000.001.00----1.00-----1.00-----------------------------------------------------------
...............................................................................................................................ACTTATTTATTTATTTATTTATTCTG.................................................................................................263.000.00--3.00--------------------------------------------------------------------
...............................................................................................................................ACTTATTTATTTATTTATTTATTTGTGG...............................................................................................283.000.00----3.00------------------------------------------------------------------
...............................................................................................................................ACTTATTTATTTATTTATTTATTTCAT................................................................................................273.000.001.00--2.00-------------------------------------------------------------------
.....................................................................................................................................................................................................................................TTCACGCCACTCTCCTCCAG.202.000.00--------2.00--------------------------------------------------------------
...............................................................................................................................ACTTATTTATTTATTTATTTATTAAG.................................................................................................262.000.001.00--1.00-------------------------------------------------------------------
................................................................................................................................CTTATTTATTTATTTATTTATTCTTG................................................................................................262.000.001.00-1.00--------------------------------------------------------------------
................................................................................................................................CTTATTTATTTATTTATTTATTTCAAG...............................................................................................272.000.001.00-1.00--------------------------------------------------------------------
.............................................................................................................................TGACTTATTTATTTATTTATTTATTTATAG...............................................................................................302.000.00-1.00---------1.00-----------------------------------------------------------
...............................................................................................................................ACTTATTTATTTATTTATTTCCAG...................................................................................................242.000.002.00----------------------------------------------------------------------
................................................................................................................................CTTATTTATTTATTTATTTATTCG..................................................................................................242.000.00--2.00--------------------------------------------------------------------
...............................................................................................................................ACTTATTTATTTATTTATTTATTTCGAG...............................................................................................282.000.00-2.00---------------------------------------------------------------------
...............................................................................................................................ACTTATTTATTTATTTATTCCAG....................................................................................................232.000.001.00-1.00--------------------------------------------------------------------
...............................................................................................................................ACTTATTTATTTATTTATTTATTCATG................................................................................................272.000.001.00-1.00--------------------------------------------------------------------
...............................................................................................................................ACTTATTTATTTATTTATTTATTCG..................................................................................................251.000.00-----1.00-----------------------------------------------------------------
........................GATACTAATGAAGATGGG................................................................................................................................................................................................................1811.001.00-------1.00---------------------------------------------------------------
..........................................................................................................................................................................................................AGCTCACTGCAAGCTCCACCTCCCGGGGCTC.................311.000.00-1.00---------------------------------------------------------------------
...............................................................................................................................ACTTATTTATTTATTTATATTG.....................................................................................................221.000.00-----1.00-----------------------------------------------------------------
....................................................................................................................................................................TCTCTGTCGCCCAGGCTGGGGCG...............................................................231.000.00----1.00------------------------------------------------------------------
................................................................................................................................CTTATTTATTTATTTATTTATTTCCG................................................................................................261.000.001.00----------------------------------------------------------------------
................................................................................................................................CTTATTTATTTATTTATTTATTTCTCG...............................................................................................271.000.00--1.00--------------------------------------------------------------------
................................................................................................................................CTTATTTATTTATTTATTTATAAAG.................................................................................................251.000.001.00----------------------------------------------------------------------
...............................................................................................................................................................GTCTCTCTCTGTCGCCCCGTC......................................................................211.000.00---------------------1.00-------------------------------------------------
..........................................................................................................................................................................................................AGCTCACTGCAAGCTCCACCTCCCGGGCC...................291.000.00-1.00---------------------------------------------------------------------
...............................................................................................................................ACTTATTTATTTATTTATTTATTTGTAG...............................................................................................281.000.00-----1.00-----------------------------------------------------------------
.....................................................................................................................................................................................................ATCTCAGCTCACTGCAAGCTCCACGCC..........................271.000.00-1.00---------------------------------------------------------------------
................................................................................................................................................................TCTCTCTCTGTCGCCCAGGCGGCG..................................................................241.000.00-1.00---------------------------------------------------------------------
...............................................................................................................................ACTTATTTATTTATTTATTTATTATG.................................................................................................261.000.00--1.00--------------------------------------------------------------------
...........AACTAGTGAATATGATACGCT..........................................................................................................................................................................................................................211.000.00---------------------------------------------------------------------1.00-
.......................TGATACTAATGAAGATGGGTTT.............................................................................................................................................................................................................2211.001.00---------------1.00-------------------------------------------------------
............................................................................................................................................................................................................CTCACTGCAAGCTCCACCTCCCGGGTCACG................301.000.00-1.00---------------------------------------------------------------------
..............................AATGAAGATGGGTTTCGTC.........................................................................................................................................................................................................191.000.00-------------------------------------------------------------------1.00---
...............................................................................................................................ACTTATTTATTTATTTATTTATTTGAGACGG............................................................................................311.000.00----1.00------------------------------------------------------------------
............................................................................................................................................................................................................................CCTCCCGGGTTCACGCCAGTTC........221.000.00----------------------------------------1.00------------------------------
................................................................................................................................................................TCTCTCTCTGTCGCCCAGGCTGGACCGC..............................................................281.000.00-1.00---------------------------------------------------------------------
.......................................................................................................................................................................................................CTCAGCTCACTGCAAGGGA................................191.000.00--------------------------------1.00--------------------------------------
......GAAAGAACTAGTGAATATGATA..............................................................................................................................................................................................................................2211.001.00---------------1.00-------------------------------------------------------
................................................................................................................................CTTATTTATTTATTTATTTATTTCAG................................................................................................261.000.00---1.00-------------------------------------------------------------------
...............................................................................................................................ACTTATTTATTTATTTATTTATTTCG.................................................................................................261.000.001.00----------------------------------------------------------------------
................................................................................................................................CTTATTTATTTATTTATTTATTCTG.................................................................................................251.000.00-----1.00-----------------------------------------------------------------
...............................................................................................................................ACTTATTTATTTATTTATTTCTAG...................................................................................................241.000.001.00----------------------------------------------------------------------
................................................................................................................................CTTATTTATTTATTTATTTATATAG.................................................................................................251.000.001.00----------------------------------------------------------------------
..........................................................................................................................................................................................................AGCTCACTGCAAGCTCCACCTCCCGCC.....................271.000.00----1.00------------------------------------------------------------------
...............................................................................................................................ACTTATTTATTTATTTATTTATCG...................................................................................................241.000.001.00----------------------------------------------------------------------
...............................................................................................................................ACTTATTTATTTATTTATTTAATAG..................................................................................................251.000.001.00----------------------------------------------------------------------
...............................................................................................................................ACTTATTTATTTATTTATTTATTTGAGACAAG...........................................................................................321.000.00--1.00--------------------------------------------------------------------
............................................................................................................................................................................................................................CCTCCCGGGTTCACGCCCTC..........201.000.00----------------------------------------------------------1.00------------
...............................................................................................................................ACTTATTTATTTATTTATTCTTG....................................................................................................231.000.00-1.00---------------------------------------------------------------------
................................................................................................................................CTTATTTATTTATTTATTTATTTCTAT...............................................................................................271.000.00--1.00--------------------------------------------------------------------
........................................................................................ATTTTCTTTCTTTAAACTC...............................................................................................................................................191.000.00-----------1.00-----------------------------------------------------------
..........................................................................................................................................................................................................AGCTCACTGCAAGCTCCACCTCCCGGCTC...................291.000.00----1.00------------------------------------------------------------------
..........................................................................................................................................................................................................AGCTCACTGCAAGCTCCACCTCCGC.......................251.000.00-1.00---------------------------------------------------------------------
........................................................................................................................................................................................................TCAGCTCACTGCAAGCTCCACGCC..........................241.000.00-1.00---------------------------------------------------------------------
....................................................................................................................................................................TCTCTGTCGCCCAGGCTGGAGTGCAGTCATG.......................................................311.000.00-1.00---------------------------------------------------------------------
...............................................................................................................................ACTTATTTATTTATTTATTTATTTCTTG...............................................................................................281.000.001.00----------------------------------------------------------------------
................................................................................................................................................................TCTCTCTCTGTCGCCCATCT......................................................................201.000.00---------------------------------------------------1.00-------------------
........................................................................................................................................................................................................TCAGCTCACTGCAAGCTCCACCTCCCGGAC....................301.000.00----1.00------------------------------------------------------------------
.....................................................................................................................................................................................................................AGCTCCACCTCCCGGGTTCACGCCTCTC.........281.000.00-1.00---------------------------------------------------------------------
...............................................................................................................................................ATTTATTTGAGACAGAGTCTCTCTCACTG..............................................................................291.000.00-1.00---------------------------------------------------------------------
...............................................................................................................................ACTTATTTATTTATTTATTTATTCAG.................................................................................................261.000.00--1.00--------------------------------------------------------------------
.................................................................................................................................................................CTCTCTCTGTCGCCCAGGCTGGAGTGCATTAG.........................................................321.000.00----1.00------------------------------------------------------------------
...............................................................................................................................ACTTATTTATTTATTTATTTATTCCAG................................................................................................271.000.00--1.00--------------------------------------------------------------------
..............................................................................................................................................................................................................................TCCCGGGTTCACGCCACTCTCCGCC...251.000.00-1.00---------------------------------------------------------------------
................................................................................................................................CTTATTTATTTATTTATTTATTCATG................................................................................................261.000.00-----1.00-----------------------------------------------------------------
.............................................................................................................................TGACTTATTTATTTATTTATAG.......................................................................................................221.000.00-1.00---------------------------------------------------------------------
..........................................................................................................................................................................................................................CACCTCCCGGGTTCACGCC.............1901.001.00--------------------------------------------------------1.00--------------
...............................................................................................................................ACTTATTTATTTATTTATTTATTCTTG................................................................................................271.000.00--1.00--------------------------------------------------------------------
..............................................................................................................................................................AGTCTCTCTCTGTCGCCCAGGCTGGAACGG..............................................................301.000.00-1.00---------------------------------------------------------------------
...............................ATGAAGATGGGTTTTTCAGGTATG...................................................................................................................................................................................................2411.001.00----1.00------------------------------------------------------------------
................................................................................................................................................................TCTCTCTCTGTCGCCCAGGCTGGAAGG...............................................................271.000.00-1.00---------------------------------------------------------------------
..........................................................................................................................................................................................................AGCTCACTGCAAGCTCCACCTCCGGGC.....................271.000.00-1.00---------------------------------------------------------------------
...............................................................................................................................ACTTATTTATTTATTTATTTATCAG..................................................................................................251.000.00--1.00--------------------------------------------------------------------
....................................................................................................................................................................TCTCTGTCGCCCAGGCTGGAACGC..............................................................241.000.00-1.00---------------------------------------------------------------------
.................................GAAGATGGGTTTTTCAGGGATT...................................................................................................................................................................................................221.000.00------------------------------------------------------------1.00----------
....................................................................................................................................................................TCTCTGTCGCCCAGGCTGGAGTGCAGGCA.........................................................291.000.00-1.00---------------------------------------------------------------------
...........................................................................................................................................................................................................................ACCTCCCGGGTTCACGCCAGTTC........231.000.00------------------1.00----------------------------------------------------
...............................................................................................................................ACTTATTTATTTATTTATTTATTTCGA................................................................................................271.000.00-1.00---------------------------------------------------------------------
...........................................................................................................................ACTGACTTATTTATTTATTTATTTATTTG..................................................................................................2920.500.50-0.50---------------------------------------------------------------------
..............................................................................................................................GACTTATTTATTTATTTATTTATTTG..................................................................................................2640.250.250.25----------------------------------------------------------------------

Antisense strand
GCATGTGAAAGAACTAGTGAATATGATACTAATGAAGATGGGTTTTTCAGGTATGTCTGATATCCCAGTGAAACCTATTTTAAATGGAATTTTCTTTCTTTAATGACAGAGTTAATCTTATTTACTGACTTATTTATTTATTTATTTATTTGAGACAGAGTCTCTCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCTATCTCAGCTCACTGCAAGCTCCACCTCCCGGGTTCACGCCACTCTCCTGCCTC
...........................................................................................................................((((((((......................(((((((.....)))))))((....))..)))).))))...........................................................
...........................................................................................................................124................................................................191.........................................................
SizePerfect hitTotal NormPerfect NormSRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189784SRR029124(GSM416753)
HeLa. (hela)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR189785SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR343335SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR189782TAX577740(Rovira)
total RNA. (breast)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR553576(SRX182782)
source: Testis. (testes)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR189786SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR038863(GSM458546)
MM603. (cell line)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR038852(GSM458535)
QF1160MB. (cell line)
.....................................................................................................................................................................................................................AGCTCCACCTCCCGGGTTCACTG.............. 235.000.00---------------1.00----2.00---------------------------------1.00-----------1.00----
............................................................................................................................................................................................................................CCTCCCGGGTTCACGCCACTCTATC..... 255.000.00----------5.00------------------------------------------------------------
.....................................................................................................................................................................................................................AGCTCCACCTCCCGGGTTAAA................ 214.000.00------4.00----------------------------------------------------------------
................................................................................................................................................................................................................CTGCAAGCTCCACCTCCCGGGTTAAT................ 264.000.00-------1.00----1.00-------------2.00--------------------------------------------
..................................................................................................................................................................................................................GCAAGCTCCACCTCCCGGGTGGCG................ 244.000.00-3.00--1.00------------------------------------------------------------------
...............................................................................................................................................................................................................ACTGCAAGCTCCACCTCCCGGGTTTT................. 264.000.00-------2.00---------------------2.00-----------------------------------------
..........................................................................................................................................................................................................AGCTCACTGCAAGCTCCACCTCCCGCTG.................... 283.000.00------------------2.00------------------------1.00---------------------------
.................................................................................................................................................................................................................TGCAAGCTCCACCTCCCGGGTTAA................. 243.000.00------1.00---------1.00------------------------------------------------1.00-----
............................................................................................................................................................AGAGTCTCTCTCTGTCGCCCAGATAA.................................................................... 263.000.00-------3.00---------------------------------------------------------------
.................................................................................................................................................................................................................................CGGGTTCACGCCACTCTCCTGAT.. 232.000.00----------------------------2.00------------------------------------------
................................................................................................................................................................................................................CTGCAAGCTCCACCTCCCGGGTTA.................. 242.000.00------1.00----------1.00-----------------------------------------------------
..................................................................................................................................TATTTATTTATTTATTTATTTGAGATCCG........................................................................................... 292.000.00-------------------------2.00---------------------------------------------
.................................CCTGAAAAACCCATCTTC....................................................................................................................................................................................................... 1812.002.00------------------------------2.00----------------------------------------
............................................................................................................................................................................................................CTCACTGCAAGCTCCACCTCCCGAA..................... 252.000.00-------------------------------------------------------------1.00------1.00--
.................................................................................................................................................................................................................TGCAAGCTCCACCTCCCGGGTTA.................. 232.000.00------2.00----------------------------------------------------------------
.................................................................................................................................................................................GGCTGGAGTGCAGTGGCGCTATGGAC............................................... 262.000.00-2.00---------------------------------------------------------------------
......................ATGATACTAATGAAGCA................................................................................................................................................................................................................... 172.000.00------------------------2.00----------------------------------------------
..................................................................................................................................................................................................................CGTGAACCCGGGAGGTGGAGCTTGC............... 2502.002.00--------------2.00--------------------------------------------------------
................................................................................................................................................................................................................CTGCAAGCTCCACCTCCCGGGTTGGT................ 262.000.00----------------------2.00------------------------------------------------
...............................................................................................................................................................................................................................CCCGGGTTCACGCCACTCTCCCG.... 231.000.00---------------------------------1.00-------------------------------------
..................................................................................................................................................................................................................GCAAGCTCCACCTCCCGGGTTCACGCCAGGCG........ 321.000.00-1.00---------------------------------------------------------------------
........................................................................................................................................................................................................................GCGTGAACCCGGGAGGTGGA.............. 2001.001.00------------1.00----------------------------------------------------------
..................................................................................................................................................................................................................GCAAGCTCCACCTCCCGGGTTC.................. 221.000.00------1.00----------------------------------------------------------------
..................................................................................................................................................................................................................GCAAGCTCCACCTCCCGGGTTGAGC............... 251.000.00----1.00------------------------------------------------------------------
.............................................................................................................................................................................................................TCACTGCAAGCTCCACCTCCCGGGTTTTT................ 291.000.00---------------------------------------1.00-------------------------------
...................................................................................................................................................................................................................CAAGCTCCACCTCCCGGGTTAAGT............... 241.000.00--------------1.00--------------------------------------------------------
...............................................................................................................................................................................................................ACTGCAAGCTCCACCTCCCGGGTTT.................. 251.000.00--------------1.00--------------------------------------------------------
..............................................................................................................................................................................................................CACTGCAAGCTCCACCTCCCGGGTTTCT................ 281.000.00---------------------------------------------------------1.00-------------
...................................................................................................................................................................................................................CAAGCTCCACCTCCCGGGTTA.................. 211.000.00------1.00----------------------------------------------------------------
.............................................................................................................................................................GAGTCTCTCTCTGTCGCCCAGGG...................................................................... 231.000.00------------------------------------------------1.00----------------------
...................................................................................................................................................................................................................CAAGCTCCACCTCCCGGA..................... 181.000.00-------------------1.00---------------------------------------------------
.............................................................................................................................................................................................................TCACTGCAAGCTCCACCTCCCGGGTTAAA................ 291.000.00------------------------------------1.00----------------------------------
......................................................................................................................................................................................................................GCGTGAACCCGGGAGGTGGAGC.............. 2201.001.00--------------------------------------------1.00--------------------------
.................................................................................................................................................................................GGCTGGAGTGCAGTGGCGCTATCTGGGA............................................. 281.000.00-1.00---------------------------------------------------------------------
......................................................................................................................................................................................................................................TCACGCCACTCTCCTGCTT. 191.000.00----------------------------------------------------------------1.00------
..................................................................................................................................................................................................................GCAAGCTCCACCTCCCGGGTTCGC................ 241.000.00-----------------------------------------------------1.00-----------------
........................................................................................................................................................................................................................GGCGTGAACCCGGGAGGTGGA............. 2101.001.00-----------------------1.00-----------------------------------------------
.........................................................................................................................................................................................................................GCGTGAACCCGGGAGGTGG.............. 1901.001.00------------1.00----------------------------------------------------------
...............................................................................................................................................................................................................................CCCGGGTTCACGCCACTCTCCGGGC.. 251.000.00-------------------------------------------------------1.00---------------
........................................................................................................................................................................................................................TCCACCTCCCGGGTTCACGCCAAAC......... 251.000.00----1.00------------------------------------------------------------------
.................................................................................................................................................................CCTGGGCGACAGAGAGAG....................................................................... 1801.001.00-------------1.00---------------------------------------------------------
.................................................................................................................................................................................GGCTGGAGTGCAGTGGCGCTATGGC................................................ 251.000.00-1.00---------------------------------------------------------------------
...................................................................................................................................................................CTCTCTGTCGCCCAGGCTGGACCTC.............................................................. 251.000.00----1.00------------------------------------------------------------------
..........................................................................................................................................................................TCGCCCAGGCTGGAGTGCAGTGGCGCTAGGG................................................. 311.000.00-1.00---------------------------------------------------------------------
.................................................................................................................................................................................................................TGCAAGCTCCACCTCCCGGGTTAAT................ 251.000.00----------------1.00------------------------------------------------------
........................................................................................................................................................................................................................................ACGCCACTCTCCTGCCTCAAAT 221.000.00-----------------------------------------------1.00-----------------------
.........................................................................................................................................................................................................CAGCTCACTGCAAGCTCCACCTCCCGGGTTCC................. 321.000.00-1.00---------------------------------------------------------------------
....................................................................................................................................................................................................................................GTTCACGCCACTCTCCTGCAA. 211.000.00----------------------------------1.00------------------------------------
........................................................................................................................................................................................................................TCCACCTCCCGGGTTCACAA.............. 201.000.00-------------------1.00---------------------------------------------------
...................................................................................................................................................................................................................CAAGCTCCACCTCCCGGGTTAAGA............... 241.000.00-----------------1.00-----------------------------------------------------
.............................................................................................................................................................................................................TCACTGCAAGCTCCACCTCCCGGAAGA.................. 271.000.00-----------------------------------------1.00-----------------------------
................................................................................................................................................................................................................CTGCAAGCTCCACCTCCCGGGTTGT................. 251.000.00--------1.00--------------------------------------------------------------
.....................................................................................................................................................................................................................AGCTCCACCTCCCGGGTTCAGCGG............. 241.000.00----1.00------------------------------------------------------------------
..................................................................................................................................................................................................................GCGTGAACCCGGGAGGTGGAGCTTGC.............. 2601.001.00-----------------------1.00-----------------------------------------------
.....................................................................................................................................................................................................................AGCTCCACCTCCCGGGTTCAG................ 211.000.00----1.00------------------------------------------------------------------
...................................................................................................................................................................................................................CAAGCTCCACCTCCCGAAAA................... 201.000.00-------------------------------1.00---------------------------------------
..............................................................................................................................................................................................................CACTGCAAGCTCCACCTCCCGGGTTTAAT............... 291.000.00-------------------------------------------------1.00---------------------
.......................................................................................................................................................................................................................GGCGTGAACCCGGGAGGTGGAG............. 2201.001.00-------------1.00---------------------------------------------------------
............................................................................................................................................TTTATTTATTTGAGACAGACTAT....................................................................................... 231.000.00--------1.00--------------------------------------------------------------
................................................................................................................................................................................................................CTGCAAGCTCCACCTCCCGGGTTCAAG............... 271.000.00------------------------------------------1.00----------------------------
..............................................................................................................................................................................CCAGGCTGGAGTGCAGTGGCGCTATCTCCCA............................................. 311.000.00-1.00---------------------------------------------------------------------
..............................................................................................................................................................................................................................TCCCGGGTTCACGCCACTCTCCTGCAA. 271.000.00-----------------------------------------------------------1.00-----------
...............................................................................................................................................................................................................................CCCGGGTTCACGCCACTTGGT...... 211.000.00---------------------1.00-------------------------------------------------
.............................................................................................................................................................GAGTCTCTCTCTGTCGCCCAATT...................................................................... 231.000.00--------------------------------------------------------------1.00--------
........................................................................................................................................................................................................TCAGCTCACTGCAAGCTCCACC............................ 221.000.00-------------1.00---------------------------------------------------------
........................................................................................................................................................................................................TCAGCTCACTGCAAGCTCCATTGG.......................... 241.000.00-------------------------------------1.00---------------------------------
.................................................................................................................................................................................GGCTGGAGTGCAGTGGCGCTGGC.................................................. 231.000.00-1.00---------------------------------------------------------------------
.................................................................................................................................................................................................................TGCAAGCTCCACCTCCCGGGTTCAAG............... 261.000.00----------------1.00------------------------------------------------------
............................................................................................................................................................................................................CTCACTGCAAGCTCCACCTCCCGGGAA................... 271.000.00-----------------------------------1.00-----------------------------------
..............................................................................................................................................................................................................CACTGCAAGCTCCACCTCCCGGGTTCGAAG.............. 301.000.00----------------------------------------------------1.00------------------
..................................................................................................................................................................................................................GCAAGCTCCACCTCCCGGGTGAGC................ 241.000.00-1.00---------------------------------------------------------------------
.............................................................................................................................................................................................................GTGAACCCGGGAGGTGGAGCTTGCAGTGA................ 2901.001.00------------1.00----------------------------------------------------------
................................................................................................................................................................................................................CTGCAAGCTCCACCTCCCGGGTTAATA............... 271.000.00-------1.00---------------------------------------------------------------
...............................................................................................................................................................................................................................CCCGGGTTCACGCCACTCTCCTGAAA. 261.000.00---------------------------------------------1.00-------------------------
.....................................................................................................................................................................................................CCGGGAGGTGGAGCTTGCAGTGAGCTGAGAT...................... 3101.001.00-------------1.00---------------------------------------------------------
.................................................................................................................................................................................................................................CGGGTTCACGCCACTCTCCTGAAA. 241.000.00--------------------------------------------------1.00--------------------
..............................................................................................................................................................................................................................TCCCGGGTTCACGCCACTTGCG...... 221.000.00--------------------------------------1.00--------------------------------
...................................................................................................................................................................................................................CAAGCTCCACCTCCCGGGTTCAGA............... 241.000.00-----------------1.00-----------------------------------------------------
........................................................................................................................................................................................................TCAGCTCACTGCAAGCTCCGA............................. 211.000.00-------------------------------1.00---------------------------------------
..............................................................................................................................................................................................................CACTGCAAGCTCCACCTCCCGGGTTTTT................ 281.000.00----------------------------------------------1.00------------------------
...............................................................................................................................................................................................................................CCCGGGTTCACGCCACTCTCCTTGGC. 261.000.00-------1.00---------------------------------------------------------------
....................................................................................................................................................................................................................AAGCTCCACCTCCCGGGTTTCGG............... 231.000.00----1.00------------------------------------------------------------------
.................................................................................................................................................................................GGCTGGAGTGCAGTGGCGCTATGAGC............................................... 261.000.00-1.00---------------------------------------------------------------------
...............................................................................................................................................................................................................................AGGCAGGAGAGTGGCGTGAACCCGGG. 2601.001.00---------------------------------------------------------------1.00-------
................................................................................................................................................................................................................CTGCAAGCTCCACCTCCCGGGTTATT................ 261.000.00----------------------------------------------------------------------1.00
..................................................................................................................................................................................................................GCAAGCTCCACCTCCCGGGCGT.................. 221.000.00-------------------1.00---------------------------------------------------