ID: uc003dhb.2_intron_0_0_chr3_53902890_r.5p
GENE: (7)
chr3:53903809-53904058-


(1)
AGO1.ip OTHER.mut 		(4)
B-CELL 		(5)
BREAST 		(8)
CELL-LINE 		(4)
CERVIX 		(1)
LIVER 		(1)
OTHER 		(1)
SKIN 		(1)
TESTES

Sense strand
CATCCTTCAGGCGAATTATTGAAAATGTGGATGTGATCACAAGGCCTAAGGTAGGTTGTTTCATTGTGCAAGTTGGACTGTATGCAAATGAAACCAGCCTTGTATGTGGACAGATCAAATCCTGGGAGGCATGGGCTTGTGTCTGAGGAGTTCTTGAGGGCTTAGGGCAAGTGGAAAAGTTAATTTCAGCAAGCCATAGATGTGGTGGAAGGTGCTCTGGCCTAAGGTACTGGATTTCTGCTGCTTTCCC
....................................................(((((((((((((.((((((.....))...)))))))))))).)))))........((((...(((..((((.....)).))..)))))))...........................................................................................................
..................................................51..........................................................................................143.........................................................................................................
SizePerfect hitTotal NormPerfect NormSRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189787SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM532874(GSM532874)
G699T. (cervix)		TAX577739(Rovira)
total RNA. (breast)		TAX577742(Rovira)
total RNA. (breast)		SRR040038(GSM532923)
G531N. (cervix)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		GSM532886(GSM532886)
G850T. (cervix)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
...................................................TAGGTTGTTTCATTGTGGTGG..................................................................................................................................................................................2119.000.0012.005.001.00-1.00----------------------
...................................................TAGGTTGTTTCATTGTGGTTG..................................................................................................................................................................................2115.000.008.007.00-------------------------
...................................................TAGGTTGTTTCATTGTGTTGG..................................................................................................................................................................................218.000.005.001.00--2.00----------------------
...................................................TAGGTTGTTTCATTGTGTTTG..................................................................................................................................................................................218.000.004.001.00------1.00--1.00----1.00----------
..........................................................................................................................TGGGAGGCATGGGCTTGT..............................................................................................................1823.503.50------0.50-------------0.500.500.500.500.500.50-
...................................................TAGGTTGTTTCATTGTGCTGGG.................................................................................................................................................................................222.000.00--2.00------------------------
...........................................................................................................................GGGAGGCATGGGCTTGTC.............................................................................................................181.000.00----------1.00----------------
........................................................................................................................................................................................................TGTGGTGGAAGGTGCATC................................181.000.00------------1.00--------------
........................ATGTGGATGTGATCACAAGGC.............................................................................................................................................................................................................2111.001.00--------------1.00------------
...................................................TAGGTTGTTTCATTGTGTTT...................................................................................................................................................................................201.000.001.00--------------------------
.......................................................................................................................TCCTGGGAGGCATGGGCTTGCG.............................................................................................................221.000.00---1.00-----------------------
..............................ATGTGATCACAAGGCAGAC.........................................................................................................................................................................................................191.000.00------1.00--------------------
........................................................................................................................................................................................................TGTGGTGGAAGGTGCTCTGGCCAAGG........................261.000.00---1.00-----------------------
.............................GATGTGATCACAAGGCCTAA.........................................................................................................................................................................................................2011.001.00-----------------1.00---------
.........................................................GTTTCATTGTGCAAGACC...............................................................................................................................................................................181.000.00-------------1.00-------------
......................................................................................................................ATCCTGGGAGGCATGGGCTCGTG.............................................................................................................231.000.00---1.00-----------------------
...................................................TAGGTTGTTTCATTGTTGG....................................................................................................................................................................................191.000.00--1.00------------------------
......................................................................................................................ATCCTGGGAGGCATGGGCTTGGGCC...........................................................................................................251.000.00-----1.00---------------------
...............................................................................................................................................TGAGGAGTTCTTGAGGGCTTAGGGCA.................................................................................2611.001.00---1.00-----------------------
...................................................TAGGTTGTTTCATTGTTGGG...................................................................................................................................................................................201.000.00-------1.00-------------------
....................................TCACAAGGCCTAAGGACAA...................................................................................................................................................................................................191.000.00------1.00--------------------
.......................................................................................................................................................................................................ATGTGGTGGAAGGTGCTCTGGCCC...........................241.000.00-----1.00---------------------
............................................................................................................................GGAGGCATGGGCTTGTGTCTA.........................................................................................................211.000.00------------------1.00--------
.....................................................................................................................................................................................................AGATGTGGTGGAAGGTGCTCTGGCCAAGG........................291.000.00-----1.00---------------------
............................................................................................................................GGAGGCATGGGCTTGTGTTTTT........................................................................................................221.000.00--------1.00------------------
...................................................TAGGTTGTTTCATTGTGGGG...................................................................................................................................................................................201.000.00--1.00------------------------
........................................................................................................................................................................................................TGTGGTGGAAGGTGCTCTAGGT............................221.000.00-------1.00-------------------
.............................................................................................................................................................................................................................CTAAGGTACTGGATTGAGG..........191.000.00---------------1.00-----------
...............................................................................................................................................................................................AGCCATAGATGTGGTGGAAGGTGCTCTGGCCT...........................3211.001.00---1.00-----------------------
..........................................................................................................................TGGGAGGCATGGGCTTG...............................................................................................................1730.330.33--------------------------0.33

Antisense strand
CATCCTTCAGGCGAATTATTGAAAATGTGGATGTGATCACAAGGCCTAAGGTAGGTTGTTTCATTGTGCAAGTTGGACTGTATGCAAATGAAACCAGCCTTGTATGTGGACAGATCAAATCCTGGGAGGCATGGGCTTGTGTCTGAGGAGTTCTTGAGGGCTTAGGGCAAGTGGAAAAGTTAATTTCAGCAAGCCATAGATGTGGTGGAAGGTGCTCTGGCCTAAGGTACTGGATTTCTGCTGCTTTCCC
....................................................(((((((((((((.((((((.....))...)))))))))))).)))))........((((...(((..((((.....)).))..)))))))...........................................................................................................
..................................................51..........................................................................................143.........................................................................................................
SizePerfect hitTotal NormPerfect NormSRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189787SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM532874(GSM532874)
G699T. (cervix)		TAX577739(Rovira)
total RNA. (breast)		TAX577742(Rovira)
total RNA. (breast)		SRR040038(GSM532923)
G531N. (cervix)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		GSM532886(GSM532886)
G850T. (cervix)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
..........................................................................................................................................................................GTGGAAAAGTTAATTTGTAG............................................................ 201.000.00---------1.00-----------------
................................................AGGTAGGTTGTTTCATGATG...................................................................................................................................................................................... 201.000.00--1.00------------------------
....................GAAAATGTGGATGTGATCTAG................................................................................................................................................................................................................. 211.000.00-------------------1.00-------
...................................................................................................................................................GAGTTCTTGAGGGCTTGGCA................................................................................... 201.000.00---1.00-----------------------