ID: uc003dfy.2_intron_3_0_chr3_52851075_r.5p
GENE: (14)
chr3:52852073-52852322-


(4)
BRAIN 		(6)
BREAST 		(9)
CELL-LINE 		(1)
CERVIX 		(15)
LIVER 		(1)
OTHER 		(5)
SKIN

Sense strand
ACCCAGACTTTTTCTTCTTTTAGAAACAACCATGACAACCCAAACCCCAGGTAAGTTCCCAGCCCCCTTGGCCCCTTTCCACATCCTTGCCCCCAGCCTGCCCTTCCTGCTCCAGGAGCCGTGCCCCGGCTGTCCCAGCCCCCATACAGGCTCCCTCTGCCATCCTGCCACTGCCTGGGCAGAGTGTGGAGCGGCTCTGTGTGGACCCCAGACACCGCCAGGGGCCAGTGAACCTGCTCTCAGACCCTGA
.................................................................................................................................................((((((((((((((((.....((....))...)))))))...)))))....))))..................................................
..........................................................................................................................................139..........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		TAX577738(Rovira)
total RNA. (breast)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		TAX577744(Rovira)
total RNA. (breast)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532876(GSM532876)
G547T. (cervix)		TAX577588(Rovira)
total RNA. (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029126(GSM416755)
143B. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
...............................................................................................................................................................................TGGGCAGAGTGTGGAGCGGCT......................................................21197.0097.0045.0038.009.003.001.001.00-----------------------------------
.................................................................................................................................................................................GGCAGAGTGTGGAGCGGCT......................................................19141.0041.0016.0015.006.001.001.001.00-------1.00---------------------------
................................................................................................................................................................................GGGCAGAGTGTGGAGCGGCT......................................................20137.0037.0019.004.007.002.00-1.001.002.00-----1.00---------------------------
...............................................................................................................................................................................TGGGCAGAGTGTGGAGCGGCTC.....................................................22125.0025.006.0012.001.005.00-1.00-----------------------------------
...............................................................................................................................................................................TGGGCAGAGTGTGGAGCGGC.......................................................20121.0021.005.009.001.005.00---1.00---------------------------------
............................................................................................................................................................................GCCTGGGCAGAGTGTGGAGCGGC.......................................................23113.0013.001.002.002.005.00--2.00----------1.00-----------------------
...............................................................................................................................................ATACAGGCTCCCTCTGCCATA......................................................................................21112.002.0010.002.00---------------------------------------
.................................................................................................................................................................................GGCAGAGTGTGGAGCGGC.......................................................18111.0011.003.003.001.002.00-1.00-1.00---------------------------------
............................................................................................................................................................................GCCTGGGCAGAGTGTGGAGCGGCT......................................................2419.009.002.003.002.00-2.00------------------------------------
...........................................................................................................................................................................TGCCTGGGCAGAGTGTGGAGCGGC.......................................................2419.009.00-3.001.003.00-1.00-------1.00---------------------------
.............................................................................................................................................................................CCTGGGCAGAGTGTGGAGCGGCT......................................................2318.008.004.003.001.00--------------------------------------
.......................................................................................................................................................................................................................CGCCAGGGGCCAGTGAACCT...............2017.007.001.00-1.00-3.00-1.00----------------------------1.00-----
..............................................................................................................................................................................CTGGGCAGAGTGTGGAGCGGCT......................................................2217.007.001.001.001.001.003.00------------------------------------
........................................................................................................................................................................................................................GCCAGGGGCCAGTGAACCT...............1917.007.002.002.003.00--------------------------------------
...............................................................................................................................................ATACAGGCTCCCTCTGCCATCC.....................................................................................2217.007.004.003.00---------------------------------------
.................................................................................................................................................................................GGCAGAGTGTGGAGCGGCTCT....................................................2117.007.002.001.004.00--------------------------------------
...............................................................................................................................................................................TGGGCAGAGTGTGGAGCGGCTCT....................................................2316.006.001.002.001.00--1.00---1.00-------------------------------
........................................................................................................................................................................................TGTGGAGCGGCTCTGTGTGGAC............................................2215.005.001.003.001.00--------------------------------------
.........................................................................................................................................................................................GTGGAGCGGCTCTGTGTGGACC...........................................2215.005.003.00----1.001.00----------------------------------
..................................................................................................................................................................................GCAGAGTGTGGAGCGGCT......................................................1815.005.00-1.00-1.00-------2.00-----1.00-----------------------
...............................................................................................................................................ATACAGGCTCCCTCTGCCATCCT....................................................................................2315.005.004.001.00---------------------------------------
.................................................................................................................................................................................................................AGACACCGCCAGGGGCCAGTGAA..................2315.005.003.001.00---1.00-----------------------------------
....................................................................................................................................................................................AGAGTGTGGAGCGGCTCTGTGTGGA.............................................2515.005.004.00--1.00-------------------------------------
.................................................................................................................................................................................GGCAGAGTGTGGAGCGGGT......................................................195.000.002.001.00---1.00----------1.00------------------------
.........................................................................................................................................................................................GTGGAGCGGCTCTGTGTGGAC............................................2114.004.002.001.00----1.00----------------------------------
............................................................................................................................................................................GCCTGGGCAGAGTGTGGAGCGG........................................................2214.004.001.001.00--1.00------------------1.00-----------------
................................................................................................................................................................................GGGCAGAGTGTGGAGCGGC.......................................................1914.004.00--1.003.00-------------------------------------
...............................................................................................................................................................................TGGGCAGAGTGTGGAGCGG........................................................1914.004.00--2.00-1.00-1.00----------------------------------
..................................................................................................................................................................................GCAGAGTGTGGAGCGGCTCT....................................................2014.004.00--1.001.00--1.001.00---------------------------------
..............................................................................................................................................CATACAGGCTCCCTCTGCCATCC.....................................................................................2314.004.003.001.00---------------------------------------
................................................................................................................................................................................................................CAGACACCGCCAGGGGCCAGTG....................2214.004.003.001.00---------------------------------------
.....................................................................................................................................................................................................................ACCGCCAGGGGCCAGTGAACCT...............2213.003.00--3.00--------------------------------------
.................................................................................................................................................................................GGCAGAGTGTGGAGCGGCTC.....................................................2013.003.00--1.001.00------------1.00------------------------
....................................................................................................................................................................................AGAGTGTGGAGCGGCTCT....................................................1813.003.003.00----------------------------------------
..................................................................................................................................................................................................................................AGTGAACCTGCTCTCAGACCC...2113.003.002.00---------------------1.00------------------
...................................................................................................................................................................................CAGAGTGTGGAGCGGCTCT....................................................1913.003.001.00-2.00--------------------------------------
.....................................................................................................................................................................................GAGTGTGGAGCGGCTCTGTGTGGAC............................................2513.003.002.00-1.00--------------------------------------
..............................................................................................................................................................................CTGGGCAGAGTGTGGAGCGGCTC.....................................................2313.003.00-3.00---------------------------------------
.................................................................................................................................................................................GGCAGAGTGTGGAGCGGCTCTA...................................................2213.007.00--3.00--------------------------------------
..................................................................................................................................................................................GCAGAGTGTGGAGCGGCTC.....................................................1913.003.001.001.00-1.00-------------------------------------
.....................................................................................................................................................................................GAGTGTGGAGCGGCTCTGTGTGG..............................................2313.003.001.00-2.00--------------------------------------
.....................AGAAACAACCATGACAAC...................................................................................................................................................................................................................1813.003.003.00----------------------------------------
...........................................................................................................................................................................TGCCTGGGCAGAGTGTGGAGCGGCT......................................................2513.003.001.002.00---------------------------------------
.........................................................................................................................................................................................GTGGAGCGGCTCTGTGTG...............................................1813.003.00--1.00------2.00-------------------------------
.....................................................................................................................................................................................................................ACCGCCAGGGGCCAGTGAA..................1912.002.001.001.00---------------------------------------
............................................................................................................................................................................GCCTGGGCAGAGTGTGGAG...........................................................1912.002.001.001.00---------------------------------------
....................................................................................................................................................................................AGAGTGTGGAGCGGCTCTGT..................................................2012.002.001.00--1.00-------------------------------------
..............................................................................................................................................................................CTGGGCAGAGTGTGGAGCGGCTCT....................................................2412.002.002.00----------------------------------------
......................................................................................................................................................................GCCACTGCCTGGGCAGAGTGT...............................................................2112.002.002.00----------------------------------------
..............................................................................................................................................................................CTGGGCAGAGTGTGGAGCGG........................................................2012.002.00----1.00-1.00----------------------------------
..................................................................................................................................................................................................................GACACCGCCAGGGGCCAGTGAACC................2412.002.001.001.00---------------------------------------
..............................................................................................................................................CATACAGGCTCCCTCTGCCATCCTG...................................................................................2512.002.002.00----------------------------------------
.................................................................................................................................................................................................................AGACACCGCCAGGGGCCAGTGA...................2212.002.002.00----------------------------------------
..................................................................................................................................................................................................................GACACCGCCAGGGGCCAGTGAA..................2212.002.002.00----------------------------------------
................................................................................................................................................................................................................CAGACACCGCCAGGGGCCAGTGAAC.................2512.002.001.001.00---------------------------------------
.........................................................................................................................................................................................GTGGAGCGGCTCTGTGTGG..............................................1912.002.00----1.001.00-----------------------------------
..........................................................................................................................................................................................TGGAGCGGCTCTGTGTGGACC...........................................2112.002.00--2.00--------------------------------------
.................................................................................................................................................................................................................AGACACCGCCAGGGGCCAGTGAACC................2512.002.002.00----------------------------------------
.....................AGAAACAACCATGACAACCC.................................................................................................................................................................................................................2012.002.002.00----------------------------------------
......................................................................................................................................................................................AGTGTGGAGCGGCTCTGTGTGGACC...........................................2512.002.001.00--------1.00-------------------------------
...........................................................................................................................................................................................................................AGGGGCCAGTGAACCTGCTC...........2012.002.001.00-1.00--------------------------------------
...............................................................................................................................................ATACAGGCTCCCTCTGCCAT.......................................................................................2012.002.002.00----------------------------------------
..............................................................................................................................................CATACAGGCTCCCTCTGCCATC......................................................................................2212.002.001.001.00---------------------------------------
......................................................................................................................................................................................AGTGTGGAGCGGCTCTGTGTG...............................................2112.002.00-2.00---------------------------------------
...............................................................................................................................................................................TGGGCAGAGTGTGGAGCGGCTCTGTGT................................................2712.002.00--2.00--------------------------------------
.......................AAACAACCATGACAACCCAAACCC...........................................................................................................................................................................................................2412.002.002.00----------------------------------------
........................................................................................................................................................................................TGTGGAGCGGCTCTGTGTGGATA...........................................2312.001.001.001.00---------------------------------------
...............................................................................................................................................ATACAGGCTCCCTCTGCCATC......................................................................................2112.002.002.00----------------------------------------
.......................................................................................................................................................................................................TGTGGACCCCAGACACCGCC...............................2012.002.001.001.00---------------------------------------
........................................................................................................................................................................................TGTGGAGCGGCTCTGTGTGGACC...........................................2312.002.002.00----------------------------------------
......................................................................................................................................................................................AGTGTGGAGCGGCTCTGTGTGG..............................................2212.002.00--2.00--------------------------------------
.....................AGAAACAACCATGACAACCCA................................................................................................................................................................................................................2112.002.001.001.00---------------------------------------
......................GAAACAACCATGACAACCC.................................................................................................................................................................................................................1912.002.001.001.00---------------------------------------
........................................................................................................................................AGCCCCCATACAGGCTCCCTCTGCCATCC.....................................................................................2912.002.00-2.00---------------------------------------
...................................................................................................................................................................................................................ACACCGCCAGGGGCCAGTGA...................2011.001.00-------------1.00---------------------------
......................................................................................................................................................................................................................CCGCCAGGGGCCAGTGAA..................1811.001.001.00----------------------------------------
................................................................................................................................................................................................................CAGACACCGCCAGGGGCCAGTGAA..................2411.001.00-1.00---------------------------------------
.................................................................................................................................................................................GGCAGAGTGTGGAGCGGCTCTGTGTG...............................................2611.001.001.00----------------------------------------
...................................................................................................................................................................................................................ACACCGCCAGGGGCCAGTGAACC................2311.001.00----1.00------------------------------------
.............................................................................................................................................................................................AGCGGCTCTGTGTGGACCCCAGAC.....................................2411.001.001.00----------------------------------------
......................................................................................................................................................................................................................................AACCTGCTCTCAGACCCT..1811.001.001.00----------------------------------------
......................................................................................................................................................................GCCACTGCCTGGGCAGAGTGTGGA............................................................2411.001.001.00----------------------------------------
......................GAAACAACCATGACAACCCA................................................................................................................................................................................................................2011.001.001.00----------------------------------------
.............................................................................................................................................................................CCTGGGCAGAGTGTGGAG...........................................................1811.001.001.00----------------------------------------
.......................................................................................................................................................................................................................CGCCAGGGGCCAGTGAACCTGCT............2311.001.00----1.00------------------------------------
.........................................................................................................................................................................................................TGGACCCCAGACACCGCCAGGGGCC........................2511.001.00---1.00-------------------------------------
.........................................AAACCCCAGGTAAGTTCCC..............................................................................................................................................................................................1911.001.001.00----------------------------------------
.............................................................................................................................................................................CCTGGGCAGAGTGTGGAGCGG........................................................2111.001.00---1.00-------------------------------------
..........................................................................................................................................................................................................GGACCCCAGACACCGCTAGG............................201.000.00---1.00-------------------------------------
..................................................................................................................................................................................................................GACACCGCCAGGGGCCAGTGAAC.................2311.001.001.00----------------------------------------
...................................................................................................................................................................................................................ACACCGCCAGGGGCCAGTGAACAG...............241.000.001.00----------------------------------------
....................................................................................................................................................GGCTCCCTCTGCCATCCTGCCA................................................................................2211.001.00-1.00---------------------------------------
........................................................................................................................................................................................TGTGGAGCGGCTCTGTGTGGA.............................................2111.001.00-1.00---------------------------------------
............................................................................................................................................................................................................................GGGGCCAGTGAACCTGCTCT..........2011.001.00-1.00---------------------------------------
...............................ATGACAACCCAAACCCCAGCCCC....................................................................................................................................................................................................231.000.001.00----------------------------------------
...........................................................CAGCCCCCTTGGCCCCTTTCCACAT......................................................................................................................................................................2511.001.001.00----------------------------------------
.........................................................................................................................................................................................GTGGAGCGGCTCTGTGTGGA.............................................2011.001.00----1.00------------------------------------
......ACTTTTTCTTCTTTTATTCG................................................................................................................................................................................................................................201.000.00-------------------------------------1.00---
.............................................................................................................................................................................CCTGGGCAGAGTGTGGAGCGGCTCT....................................................2511.001.00-----1.00-----------------------------------
......................................................................................................................................CCAGCCCCCATACAGGCTCCC...............................................................................................2111.001.001.00----------------------------------------
.................................................................................................................................................................................GGCAGAGTGTGGAGCGGCTCTAC..................................................2311.007.001.00----------------------------------------
...........................................................................................................................................................................TGCCTGGGCAGAGTGTGGAGCGGCTT.....................................................2611.003.00---1.00-------------------------------------
.....................................................................................................................................................................................................................ACCGCCAGGGGCCAGTGA...................1811.001.00-1.00---------------------------------------
..............................................................................................................................................................GCCATCCTGCCACTGCCTTGAC......................................................................2241.000.251.00----------------------------------------
....................................................................................................................................................................................................................CACCGCCAGGGGCCAGTGAA..................2011.001.00-1.00---------------------------------------
...............................................................................................................................................................................TGGGCAGAGTGTGGAGCGGATC.....................................................2211.004.00-1.00---------------------------------------
........................................................................................................................................................................................................................GCCAGGGGCCAGTGAACC................1811.001.001.00----------------------------------------
.................................................................................................................................................................................GGCAGAGTGTGGAGCGGA.......................................................181.000.001.00----------------------------------------
.......................................................................................................................................................................................GTGTGGAGCGGCTCTGGG.................................................181.000.00---1.00-------------------------------------
....................................................................................................................................................................................AGAGTGTGGAGCGGCTCTGTGTGGACA...........................................271.000.001.00----------------------------------------
.....................AGAAACAACCATGACAACC..................................................................................................................................................................................................................1911.001.001.00----------------------------------------
...........................................................................................................................................................................................GGAGCGGCTCTGTGTGGACCCCAGACAC...................................2811.001.00-1.00---------------------------------------
..........................................................................................................................................................................................TGGAGCGGCTCTGTGTGGAC............................................2011.001.00--1.00--------------------------------------
............................................................................................................................................................................GCCTGGGCAGAGTGTGGAGCGGT.......................................................2311.004.00---1.00-------------------------------------
.......................................................................................................................................................................................GTGTGGAGCGGCTCTGTGTGG..............................................2111.001.001.00----------------------------------------
..............TTCTTTTAGAAACAACCATGACAACCCA................................................................................................................................................................................................................2811.001.00-1.00---------------------------------------
.................................................................................................................................................................................................................AGACACCGCCAGGGGCCAGTG....................2111.001.001.00----------------------------------------
...................................................................................................................................................AGGCTCCCTCTGCCATCCTGC..................................................................................2111.001.00-1.00---------------------------------------
......................GAAACAACCATGACAACCCAAACCC...........................................................................................................................................................................................................2511.001.00-1.00---------------------------------------
...............................................................................................................................................................................................................................GCCAGTGAACCTGCTCTCAGACCCT..2511.001.00-1.00---------------------------------------
.................................................................................................................................................................................................GCTCTGTGTGGACCCCAGACAC...................................2211.001.00--1.00--------------------------------------
....................................................................................................................................................................................AGAGTGTGGAGCGGCTCTGTG.................................................2111.001.00---1.00-------------------------------------
....................................................................................................................................................................................................................................TGAACCTGCTCTCAGACCGTG.211.000.00---1.00-------------------------------------
...............................ATGACAACCCAAACCCCAGCCC.....................................................................................................................................................................................................221.000.001.00----------------------------------------
....................................................................................................................................................................................AGAGTGTGGAGCGGCTCTGGGTG...............................................231.000.001.00----------------------------------------
...........................AACCATGACAACCCAAACCCCAGACC.....................................................................................................................................................................................................261.000.00-1.00---------------------------------------
.................................................................................................................................................................................................................AGACACCGCCAGGGGCCAG......................1911.001.00-1.00---------------------------------------
....................................................................................................................................................................................AGAGTGTGGAGCGGCTCTGTGTG...............................................2311.001.00-1.00---------------------------------------
......................GAAACAACCATGACAACCCAAACCCC..........................................................................................................................................................................................................2611.001.00-1.00---------------------------------------
...................................................................................................................................................................................................................ACACCGCCAGGGGCCAGT.....................1811.001.001.00----------------------------------------
............................ACCATGACAACCCAAACCCCAGCCCC....................................................................................................................................................................................................261.000.00-1.00---------------------------------------
.........................................................................................................................................................................................................TGGACCCCAGACACCGCCAGGGGC.........................2411.001.00---1.00-------------------------------------
............................................................................................................................................................................GCCTGGGCAGAGTGTGGAGCGGCTCT....................................................2611.001.00---1.00-------------------------------------
..................................................................................................................................................................................................CTCTGTGTGGACCCCAGAC.....................................1911.001.00----1.00------------------------------------
....................................................................................................................................................................................................................................TGAACCTGCTCTCAGACCCTG.2111.001.00---1.00-------------------------------------
....................................................................................................................................................................................AGAGTGTGGAGCGGCTCTGTGTGG..............................................2411.001.001.00----------------------------------------
.......................................................................................................................................................................................................................CGCCAGGGGCCAGTGAACC................1911.001.001.00----------------------------------------
.....................................................................................................................................................................................................TGTGTGGACCCCAGACACCGCC...............................2211.001.001.00----------------------------------------
.........................ACAACCATGACAACCCAAACCCCAG........................................................................................................................................................................................................2511.001.00-1.00---------------------------------------
...............................................................................................................................................................................TGGGCAGAGTGTGGAGCGGCTGT....................................................2311.0097.001.00----------------------------------------
...............................................................................................................................................ATACAGGCTCCCTCTGCCATCCTGCC.................................................................................2611.001.001.00----------------------------------------
..................................................................................................................................................................................................................................AGTGAACCTGCTCTCAGAC.....1911.001.001.00----------------------------------------
...................................................................................................................................................................................CAGAGTGTGGAGCGGCTC.....................................................1821.001.00--0.500.50-------------------------------------
.......................................................................................................................................................................................................................CGCCAGGGGCCAGTGAAC.................1811.001.00---------1.00-------------------------------
...............................................................................................................................................ATACAGGCTCCCTCTGCCATT......................................................................................2111.002.00-------1.00---------------------------------
.........................................................................................................................................................................................GTGGAGCGGCTCTGTGTGGACCC..........................................2311.001.00------1.00----------------------------------
.......................AAACAACCATGACAACCC.................................................................................................................................................................................................................1811.001.00----1.00------------------------------------
..............................................................................................................................................................................CTGGGCAGAGTGTGGAGCGGC.......................................................2111.001.00--1.00--------------------------------------
...............................................................................................................................................................................TGGGCAGAGTGTGGAGCGGCTCC....................................................2311.0025.001.00----------------------------------------
.........................................................................................................................................................................................GTGGAGCGGCTCTGTGTGGACCCC.........................................2411.001.00----------------------------------1.00------
.........................................................................................................................................................................ACTGCCTGGGCAGAGTGTGGAGCGGCT......................................................2711.001.001.00----------------------------------------
...........................................................................................................................................................................................GGAGCGGCTCTGTGTGGACCC..........................................2111.001.00--1.00--------------------------------------
.........................................................................................................................................................................................................TGGACCCCAGACACCGCCAGGGGCCA.......................2611.001.00---1.00-------------------------------------
....AGACTTTTTCTTCTTTTTTGG.................................................................................................................................................................................................................................211.000.00--------------1.00--------------------------
...........................AACCATGACAACCCAAACCCCAGCC......................................................................................................................................................................................................251.000.001.00----------------------------------------
...........................................................................................................................................................................................GGAGCGGCTCTGTGTGGACT...........................................201.000.00----1.00------------------------------------
......................GAAACAACCATGACAACCCAAACCCCA.........................................................................................................................................................................................................2711.001.001.00----------------------------------------
........................................................................................................................................................................................TGTGGAGCGGCTCTGTGTG...............................................1911.001.00-1.00---------------------------------------
......................................................................................................................................................................................AGTGTGGAGCGGCTCTGTGTGGAC............................................2411.001.00-1.00---------------------------------------
..............................................................................................................................................CATACAGGCTCCCTCTGCCATCCT....................................................................................2411.001.001.00----------------------------------------
......................GAAACAACCATGACAACCCAAAC.............................................................................................................................................................................................................2311.001.001.00----------------------------------------
..............................................................................................................................................................................................................................GGCCAGTGAACCTGCTCTCAGACCC...2511.001.001.00----------------------------------------
....AGACTTTTTCTTCTTTTTG...................................................................................................................................................................................................................................191.000.00--------------1.00--------------------------
..................................................................................................................................................................................................................GACACCGCCAGGGGCCAGTGAACCTGCT............2811.001.00--1.00--------------------------------------
.................................................................................................................................CTGTCCCAGCCCCCAAG........................................................................................................171.000.00--------------1.00--------------------------
.........................................................................................................................................................................................GTGGAGCGGCTCTGTGTGGACCA..........................................2311.005.001.00----------------------------------------
.......................................................................................................................................................................................GTGTGGAGCGGCTCTGTGTGGAC............................................2311.001.00---1.00-------------------------------------
................................................................................................................................................................................GGGCAGAGTGTGGAGCGGCTC.....................................................2111.001.00-1.00---------------------------------------
.................................................................................................................................................................................................................AGACACCGCCAGGGGCCAGTGAAC.................2411.001.00-1.00---------------------------------------
............................................................................................................................................................................GCCTGGGCAGAGTGTGGAGCGGCTT.....................................................2511.009.00-------1.00---------------------------------
...........................AACCATGACAACCCAAACCCCA.........................................................................................................................................................................................................2211.001.001.00----------------------------------------
...........................AACCATGACAACCCAAACCCC..........................................................................................................................................................................................................2111.001.00---------1.00-------------------------------
.............................................................................................................................................................................CCTGGGCAGAGTGTGGAGCGGC.......................................................2211.001.00---1.00-------------------------------------
................................................................................................................................................................................GGGCAGAGTGTGGAGCGGCTCT....................................................2211.001.00-1.00---------------------------------------
..........................................................................................................................................................................................TGGAGCGGCTCTGTGTGGACCC..........................................2211.001.00-1.00---------------------------------------
...........................................................................................................................................................................TGCCTGGGCAGAGTGTGGAGCG.........................................................2211.001.00--1.00--------------------------------------
..................................................................................................................................................................................................................GACACCGCCAGGGGCCAGTGAACCT...............2511.001.00---1.00-------------------------------------
........................AACAACCATGACAACCCAAACCCCAG........................................................................................................................................................................................................2611.001.00-1.00---------------------------------------
............................................................................................................................................CCCATACAGGCTCCCTCTGCCATA......................................................................................241.000.001.00----------------------------------------
............................ACCATGACAACCCAAACCCCAGCC......................................................................................................................................................................................................241.000.001.00----------------------------------------
......................................................................................................................................CCAGCCCCCATACAGGCTCCCTC.............................................................................................2311.001.001.00----------------------------------------
........................................................................................................................................................................................................GTGGACCCCAGACACCGCCA..............................2011.001.00-1.00---------------------------------------
................................................................................................................................................................................................................CAGACACCGCCAGGGGCCAGTGA...................2311.001.00-1.00---------------------------------------
............................................................................................................................................................................GCCTGGGCAGAGTGTGGAGCGGA.......................................................2311.004.00---1.00-------------------------------------
..................................................................................................................................................................................................................GACACCGCCAGGGGCCAGTGA...................2111.001.00-1.00---------------------------------------
.......................................................................................................................................CAGCCCCCATACAGGCTCCCTC.............................................................................................2211.001.00-1.00---------------------------------------
............................................................................................................................................CCCATACAGGCTCCCTCTGCCATCCTGCC.................................................................................2911.001.00-1.00---------------------------------------
..................................................................................................................................................................................................................GACACCGCCAGGGGCCAGTG....................2011.001.00-1.00---------------------------------------
.........................................................................................................................................................................................................TGGACCCCAGACACCGCCA..............................1911.001.001.00----------------------------------------
....................................AACCCAAACCCCAGGTAAGTTCC...............................................................................................................................................................................................2311.001.00---1.00-------------------------------------
............................................................................................................................................CCCATACAGGCTCCCTCTGCCATC......................................................................................2411.001.001.00----------------------------------------
....................................................................................................................................................................................AGAGTGTGGAGCGGCTCTGTGTGGTAC...........................................2711.001.00-1.00---------------------------------------
..............................................................................................................................................................................CTGGGCAGAGTGTGGAGCG.........................................................1911.001.00----1.00------------------------------------
....AGACTTTTTCTTCTTTTAG...................................................................................................................................................................................................................................1920.500.50--------------0.50--------------------------
........................................................................................GCCCCCAGCCTGCCCTTC................................................................................................................................................1830.330.33------0.33----------------------------------
..................................................................................................................................................................................................................GACACCGCCAGGGGC.........................1540.250.25---------------------------------------0.25-
..............................................................................................................................................................GCCATCCTGCCACTGCCT..........................................................................1840.250.25-0.25---------------------------------------

Antisense strand
ACCCAGACTTTTTCTTCTTTTAGAAACAACCATGACAACCCAAACCCCAGGTAAGTTCCCAGCCCCCTTGGCCCCTTTCCACATCCTTGCCCCCAGCCTGCCCTTCCTGCTCCAGGAGCCGTGCCCCGGCTGTCCCAGCCCCCATACAGGCTCCCTCTGCCATCCTGCCACTGCCTGGGCAGAGTGTGGAGCGGCTCTGTGTGGACCCCAGACACCGCCAGGGGCCAGTGAACCTGCTCTCAGACCCTGA
.................................................................................................................................................((((((((((((((((.....((....))...)))))))...)))))....))))..................................................
..........................................................................................................................................139..........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		TAX577738(Rovira)
total RNA. (breast)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		TAX577744(Rovira)
total RNA. (breast)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532876(GSM532876)
G547T. (cervix)		TAX577588(Rovira)
total RNA. (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029126(GSM416755)
143B. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
..........................................................................................................................................................CTCTGCCATCCTGCCCGG.............................................................................. 1817.000.00-------1.005.00-1.00-3.00--2.00---------1.00---1.00-1.00----1.00-1.00--
..........................................................................................................................................................CTCTGCCATCCTGCCCGGT............................................................................. 196.000.00------1.001.001.00-1.002.00-----------------------------
..........................................................................................................................................................CTCTGCCATCCTGCCCG............................................................................... 172.000.00--------2.00--------------------------------
.....................................................AGTTCCCAGCCCCCTCTG................................................................................................................................................................................... 182.000.00------------------1.001.00---------------------
.........................................................................................................................................................CCTCTGCCATCCTGCCATTGC............................................................................ 211.000.00----1.00------------------------------------
.............................................................................................CAGCCTGCCCTTCCTATGG.......................................................................................................................................... 191.000.001.00----------------------------------------
........................................................................................................................................................CCCTCTGCCATCCTGCCCTGT............................................................................. 211.000.00--------------------------------1.00--------
..............................CATGACAACCCAAACC............................................................................................................................................................................................................ 161.000.00---------------------------------1.00-------
..........................................................................................................................................................CTCTGCCATCCTGCCTGGT............................................................................. 191.000.00----------1.00------------------------------
..........................................................................................................................................................GGCAGGATGGCAGAG................................................................................. 1501.001.00--------------------------1.00--------------
..........................................................................................................................................................CTCTGCCATCCTGCCCGCA............................................................................. 191.000.00------------1.00----------------------------
..................................................................................................................GGAGCCGTGCCCCGGGGGA..................................................................................................................... 191.000.00------------------------1.00----------------
..........................................................................................................................................................CTCTGCCATCCTGCCTGT.............................................................................. 181.000.00------------------------------1.00----------
........................................................................................................................................................CCCTCTGCCATCCTGCCCTCT............................................................................. 211.000.00---------------------1.00-------------------
........................................CAAACCCCAGGTAAGACGA............................................................................................................................................................................................... 191.000.00---------------------------1.00-------------
.................................................................................CATCCTTGCCCCCAGCCG....................................................................................................................................................... 181.000.00--------------------1.00--------------------
..........................................................................................................................................................CTCTGCCATCCTGCCCGGG............................................................................. 191.000.00----------1.00------------------------------
..........................................................................................................................................................CTCTGCCATCCTGCCCGT.............................................................................. 181.000.00----------------------------1.00------------
..........................................................................................................................................................CTCTGCCATCCTGCCTCGT............................................................................. 191.000.00----------1.00------------------------------
..........................................................................................................................................................TGGCAGGATGGCAGAG................................................................................ 1670.140.14----------------------------------------0.14