ID: uc003dff.2_intron_0_0_chr3_52720072_f.5p
GENE: (1)
chr3:52720022-52720271+


(1)
AGO2.ip 		(10)
B-CELL 		(1)
BRAIN 		(9)
BREAST 		(32)
CELL-LINE 		(15)
CERVIX 		(3)
HEART 		(9)
HELA 		(4)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(22)
SKIN 		(1)
TESTES 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
AGTGCGTGACGCTCGTCAGTGGCTTCAGTTCACACGTGGCGCCAGCGGAGGCAGGTTGATGTGTTTGTGCTTCCTTCTACAGCCAATATGAAAAGGCCTAGTAAGTGGGGTCGGGAGGCGGGCGTGGAGGGACCCACGTCTGGAAGTTGCTGCAGCCACCACGACGCTCTTCTACGGCTACGGCTTTGTCTCTGCTGGTATGGGGGTGGGAGCCTACGCGTAGGCCTTGGCCCTATTTCCTGGTAGAACC
..................................................(((......)))...((((..(((((((((.(((..........(((((........)))))........))))))))))))..))))................................................................................................................
..................................................51.........................................................................................142..........................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR040028(GSM532913)
G026N. (cervix)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR040010(GSM532895)
G529N. (cervix)		TAX577746(Rovira)
total RNA. (breast)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189785SRR040031(GSM532916)
G013T. (cervix)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		TAX577745(Rovira)
total RNA. (breast)		SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		GSM359196(GSM359196)
m3m7G_ip. (cell line)		GSM359177(GSM359177)
hela_nucl_a. (hela)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR040027(GSM532912)
G220T. (cervix)		SRR343334SRR189784SRR029124(GSM416753)
HeLa. (hela)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM532878(GSM532878)
G691T. (cervix)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM359174(GSM359174)
hela_5_1. (hela)		SRR040011(GSM532896)
G529T. (cervix)		GSM359175(GSM359175)
hela_5_pct. (hela)		SRR040016(GSM532901)
G645N. (cervix)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		GSM359176(GSM359176)
hela_chip_smrna_pure. (hela)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040007(GSM532892)
G601T. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR040039(GSM532924)
G531T. (cervix)		SRR040025(GSM532910)
G613T. (cervix)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR038854(GSM458537)
MM653. (cell line)		SRR040022(GSM532907)
G575N. (cervix)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR040006(GSM532891)
G601N. (cervix)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR029126(GSM416755)
143B. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577579(Rovira)
total RNA. (breast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR040035(GSM532920)
G001T. (cervix)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR040015(GSM532900)
G623T. (cervix)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
...........................................AGCGGAGGCAGGTTGATG.............................................................................................................................................................................................1818.008.00---------------3.00---------------------------1.00---------------1.00-----------------------1.00----------1.00----1.00--------------
........................................................................................................................GGCGTGGAGGGACCCAAA................................................................................................................186.000.00-------4.00-----------------------1.00-----------------------------------------------------1.00----------------------------
.....................................................................................................................GCGGGCGTGGAGGGACCCA..................................................................................................................1915.005.00-----5.00------------------------------------------------------------------------------------------------------------
.........................................................................................................TGGGGTCGGGAGGCGGGCG..............................................................................................................................1915.005.00--------------------2.00-----------2.00-------------------------------------1.00-------------------------------------------
..........................................CAGCGGAGGCAGGTTGATG.............................................................................................................................................................................................1915.005.00----2.00--------2.00-------------------------------1.00--------------------------------------------------------------------
..........................AGTTCACACGTGGCGCCAGCGGAGGC......................................................................................................................................................................................................2615.005.00----------------------------------------1.00---------------1.00-1.00------1.00----------------1.00-------------------------------
..........................AGTTCACACGTGGCGCCAGCGGAGGCAGGTTGATGT............................................................................................................................................................................................3614.004.00----------------------2.00----------------2.00--------------------------------------------------------------------------
......................................................................................................................................CACGTCTGGAAGTTGCTGC.................................................................................................1914.004.00------------4.00-----------------------------------------------------------------------------------------------------
........................................GCCAGCGGAGGCAGGTTGCTG.............................................................................................................................................................................................2113.002.00-2.00-----------1.00----------------------------------------------------------------------------------------------------
......................................................................................TATGAAAAGGCCTAGTAAG.................................................................................................................................................1913.003.00---------3.00--------------------------------------------------------------------------------------------------------
.....................................GGCGCCAGCGGAGGCAGGT..................................................................................................................................................................................................1913.003.002.00------------------------------------------------------------------------------------------1.00----------------------
............................................GCGGAGGCAGGTTGATGTG...........................................................................................................................................................................................1913.003.00------1.00-1.00-----------------1.00---------------------------------------------------------------------------------------
..................................................GCAGGTTGATGTGTTTGTGCTT..................................................................................................................................................................................2213.003.00--------3.00---------------------------------------------------------------------------------------------------------
..............................CACACGTGGCGCCAGCGGAG........................................................................................................................................................................................................2013.003.00--3.00---------------------------------------------------------------------------------------------------------------
................................................AGGCAGGTTGATGTGTTTG.......................................................................................................................................................................................1913.003.00----1.00---------------------------------------------------------------------------------1.00-------------1.00-------------
.........................................CCAGCGGAGGCAGGTTGATG.............................................................................................................................................................................................2013.003.00------1.00----------------------------------1.00-------------------------------------------------------1.00----------------
.............................................................................................AGGCCTAGTAAGTGGGGTCGGGAGG....................................................................................................................................2513.003.00-3.00----------------------------------------------------------------------------------------------------------------
.........................................CCAGCGGAGGCAGGTTGC...............................................................................................................................................................................................183.000.00-------------------2.00----1.00-----------------------------------------------------------------------------------------
........................TCAGTTCACACGTGGCGCCAGCGGAGGC......................................................................................................................................................................................................2813.003.00--------------3.00---------------------------------------------------------------------------------------------------
......................................GCGCCAGCGGAGGCAGGTTGC...............................................................................................................................................................................................2113.001.00----------------3.00-------------------------------------------------------------------------------------------------
....................................TGGCGCCAGCGGAGGCAGGT..................................................................................................................................................................................................2013.003.003.00-----------------------------------------------------------------------------------------------------------------
............................................................................CTACAGCCAATATGAAAA............................................................................................................................................................1812.002.00-----------------------2.00------------------------------------------------------------------------------------------
............................................GCGGAGGCAGGTTGATGT............................................................................................................................................................................................1812.002.00---------------------1.00--------------1.00-----------------------------------------------------------------------------
........................................GCCAGCGGAGGCAGGTTG................................................................................................................................................................................................1812.002.00---1.00-------------------------------------------------------------------------1.00------------------------------------
............................................................................CTACAGCCAATATGAAAAGG..........................................................................................................................................................2012.002.00-2.00----------------------------------------------------------------------------------------------------------------
...............................ACACGTGGCGCCAGCGG..........................................................................................................................................................................................................1712.002.00---------------------------------2.00--------------------------------------------------------------------------------
...........................................AGCGGAGGCAGGTTGATGTGT..........................................................................................................................................................................................2112.002.00-------------------------------------1.00-------------------1.00--------------------------------------------------------
...........................................AGCGGAGGCAGGTTGCTGT............................................................................................................................................................................................192.000.00---2.00--------------------------------------------------------------------------------------------------------------
...............................ACACGTGGCGCCAGCGGA.........................................................................................................................................................................................................1812.002.00---------------------1.00---------------------------------------------1.00----------------------------------------------
......................................GCGCCAGCGGAGGCAGGT..................................................................................................................................................................................................1812.002.00----1.00-------------------------1.00-----------------------------------------------------------------------------------
.........................................CCAGCGGAGGCAGGTTGATGTGTTTG.......................................................................................................................................................................................2612.002.00--------1.00----------------------------------------------------1.00----------------------------------------------------
.............................................................................................AGGCCTAGTAAGTGGGGTCGGGAG.....................................................................................................................................2412.002.002.00-----------------------------------------------------------------------------------------------------------------
.......................................................................................................AGTGGGGTCGGGAGGCGGGCGTGGAG.........................................................................................................................2612.002.00----------2.00-------------------------------------------------------------------------------------------------------
...........................................AGCGGAGGCAGGTTGATGTG...........................................................................................................................................................................................2012.002.00--------------------------------------2.00---------------------------------------------------------------------------
......................................................................................................................CGGGCGTGGAGGGACCCA..................................................................................................................1812.002.002.00-----------------------------------------------------------------------------------------------------------------
.............................................CGGAGGCAGGTTGATGTGTTT........................................................................................................................................................................................2112.002.00-------------------------2.00----------------------------------------------------------------------------------------
.................................ACGTGGCGCCAGCGGAGGCAGGTTGCTGT............................................................................................................................................................................................2912.001.00-----------2.00------------------------------------------------------------------------------------------------------
...............................................................................................................CGGGAGGCGGGCGTGGAGGG.......................................................................................................................2011.001.00---------------------------1.00--------------------------------------------------------------------------------------
................................................................................................CCTAGTAAGTGGGGTCGGGAGGCGGG................................................................................................................................2611.001.00------------------------------------------------------------------------1.00-----------------------------------------
.................................................................................................CTAGTAAGTGGGGTCGGG.......................................................................................................................................1811.001.00-1.00----------------------------------------------------------------------------------------------------------------
...............................................................................CAGCCAATATGAAAAGGC.........................................................................................................................................................1811.001.00------------------------------------------------1.00-----------------------------------------------------------------
..................................................................................CCAATATGAAAAGGCCTAAA....................................................................................................................................................201.000.00-------------------------------------------------------------------------------1.00----------------------------------
.................................ACGTGGCGCCAGCGGAGGCAGGTTG................................................................................................................................................................................................2511.001.00-1.00----------------------------------------------------------------------------------------------------------------
................................................................................................CCTAGTAAGTGGGGTCGGGAG.....................................................................................................................................2111.001.00------------------------------------------------------------------------------------------------1.00-----------------
.........................CAGTTCACACGTGGCGCCAGCGGAGG.......................................................................................................................................................................................................2611.001.00----------------------------------------1.00-------------------------------------------------------------------------
...............................................................................................................................AGGGACCCACGTCTGGA..........................................................................................................1711.001.00------------------------------------------------------------------1.00-----------------------------------------------
.......................................................................................................AGTGGGGTCGGGAGGCGGGCGCGG...........................................................................................................................241.000.00----------1.00-------------------------------------------------------------------------------------------------------
...............................ACACGTGGCGCCAGCGGAGGCAGGCTGC...............................................................................................................................................................................................281.000.00----------1.00-------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................CTTTGTCTCTGCTGGTATGGGG.............................................2211.001.00----------------------------------------------------------------1.00-------------------------------------------------
......................................................................................................AAGTGGGGTCGGGAGGCG..................................................................................................................................1811.001.00------------------------------------------------------------------------------------1.00-----------------------------
........................................................................................................GTGGGGTCGGGAGGCGGG................................................................................................................................1811.001.00-------------------------------------------------------------------------1.00----------------------------------------
................................................AGGCAGGTTGATGTGTTTGTGCT...................................................................................................................................................................................2311.001.00--------------------------------------------------------------1.00---------------------------------------------------
...................................................................................................................................ACCCACGTCTGGAAGTTGC....................................................................................................1911.001.00----------------------------------------------------------------------------------------1.00-------------------------
.............................................................................................AGGCCTAGTAAGTGGGG............................................................................................................................................1711.001.00---------------------------------------------------------------------------1.00--------------------------------------
..............................................GGAGGCAGGTTGATGTGTAGTT......................................................................................................................................................................................221.000.00-----------------1.00------------------------------------------------------------------------------------------------
........................................GCCAGCGGAGGCAGGTTGATGT............................................................................................................................................................................................2211.001.00------1.00-----------------------------------------------------------------------------------------------------------
..............................................GGAGGCAGGTTGATGTGTAC........................................................................................................................................................................................201.000.00-----------------1.00------------------------------------------------------------------------------------------------
.........................................................................................................TGGGGTCGGGAGGCG..................................................................................................................................1511.001.00----------------------------1.00-------------------------------------------------------------------------------------
..............................................................................................................TCGGGAGGCGGGCGTGGA..........................................................................................................................1811.001.00---------------------------------------------------------------1.00--------------------------------------------------
.......................TTCAGTTCACACGTGGCGCCAGCGGA.........................................................................................................................................................................................................2611.001.00-----------------------------------------------------------------------------------------1.00------------------------
.................................................................................................................................................................................................GCTGGTATGGGGGTGATGG......................................191.000.00----------------------------------------------------------------------------1.00-------------------------------------
..................................................................................................................GAGGCGGGCGTGGAGGG.......................................................................................................................1711.001.00--------------------------------------------------------------------------------------------------1.00---------------
....................GGCTTCAGTTCACACGTAACA.................................................................................................................................................................................................................211.000.00------------------------------------------------------------------------------------------1.00-----------------------
................................................AGGCAGGTTGATGTGTTTGT......................................................................................................................................................................................2011.001.00------------------------------1.00-----------------------------------------------------------------------------------
...............................................................................................................CGGGAGGCGGGCGTGGAG.........................................................................................................................1811.001.00---1.00--------------------------------------------------------------------------------------------------------------
........................................GCCAGCGGAGGCAGGTTGC...............................................................................................................................................................................................1911.002.00---1.00--------------------------------------------------------------------------------------------------------------
....................................TGGCGCCAGCGGAGGCAGG...................................................................................................................................................................................................1911.001.00------------------------------------------------------1.00-----------------------------------------------------------
....................................................................................................................................CCCACGTCTGGAAGTTGCTGC.................................................................................................2111.001.00---------------------------------------------------------------------------------------------1.00--------------------
...............................................GAGGCAGGTTGATGTGTTTGTG.....................................................................................................................................................................................2211.001.00--------------------------------------------1.00---------------------------------------------------------------------
......................................................................................................................CGGGCGTGGAGGGACCCC..................................................................................................................181.000.001.00-----------------------------------------------------------------------------------------------------------------
........................................GCCAGCGGAGGCAGGTTGATGTGTTTG.......................................................................................................................................................................................2711.001.00--------------------------------------------------------------------1.00---------------------------------------------
......................................................................................................................................................................................GCTTTGTCTCTGCTGAG...................................................171.000.00----------------------------1.00-------------------------------------------------------------------------------------
....................................................AGGTTGATGTGTTTGTGC....................................................................................................................................................................................1811.001.00-----------------------------------------------------1.00------------------------------------------------------------
...........CTCGTCAGTGGCTTCAG..............................................................................................................................................................................................................................1711.001.00---------1.00--------------------------------------------------------------------------------------------------------
...............................................................................................................CGGGAGGCGGGCGTGGA..........................................................................................................................1711.001.00---------------------------1.00--------------------------------------------------------------------------------------
.......................................CGCCAGCGGAGGCAGGT..................................................................................................................................................................................................1711.001.00-----------------------------------------------------------------------1.00------------------------------------------
...............................................................................................................................................................................GGCTACGGCTTTGTCTC..........................................................1711.001.00-------------------------------------------------1.00----------------------------------------------------------------
.......................................................................................................AGTGGGGTCGGGAGGCGGGCGTGGAGG........................................................................................................................2711.001.00-----------1.00------------------------------------------------------------------------------------------------------
.....................................................................CTTCCTTCTACAGCCACATG.................................................................................................................................................................201.000.00----------------------------------------------1.00-------------------------------------------------------------------
..................................CGTGGCGCCAGCGGAGGCAGG...................................................................................................................................................................................................2111.001.00--1.00---------------------------------------------------------------------------------------------------------------
.............................TCACACGTGGCGCCAGCGGA.........................................................................................................................................................................................................2011.001.00--------------------------1.00---------------------------------------------------------------------------------------
.......................................CGCCAGCGGAGGCAGGTTGATGTGT..........................................................................................................................................................................................2511.001.00----1.00-------------------------------------------------------------------------------------------------------------
.............................................CGGAGGCAGGTTGATGTG...........................................................................................................................................................................................1811.001.00------1.00-----------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................CGGCTACGGCTTTGTCTCTGC.......................................................2111.001.00-----------------------------------1.00------------------------------------------------------------------------------
......................................................................................................................................CACGTCTGGAAGTTGCTGCAG...............................................................................................2111.001.00------------------------------------------------------------1.00-----------------------------------------------------
..................................................................................................................GAGGCGGGCGTGGAGGGAAAA...................................................................................................................211.000.00--------------------------------------------------------------------------------1.00---------------------------------
...............................................................................................................................................AAGTTGCTGCAGCCACCCG........................................................................................191.000.00-----------------------------1.00------------------------------------------------------------------------------------
..........................................CAGCGGAGGCAGGTTGAT..............................................................................................................................................................................................1811.001.00---------------------------------------------------------------------------------1.00--------------------------------
..........................AGTTCACACGTGGCG.................................................................................................................................................................................................................1511.001.00---------------------------------------------------------------------------------------1.00--------------------------
....................................................AGGTTGATGTGTTTGTGCTTCC................................................................................................................................................................................2211.001.00-----------------------------------1.00------------------------------------------------------------------------------
...................................GTGGCGCCAGCGGAGG.......................................................................................................................................................................................................1611.001.00------------------------------------------1.00-----------------------------------------------------------------------
.............................TCACACGTGGCGCCAGCGGAGGC......................................................................................................................................................................................................2311.001.00--------------1.00---------------------------------------------------------------------------------------------------
...............................................................................................GCCTAGTAAGTGGGGTCGGGAGG....................................................................................................................................2311.001.00--1.00---------------------------------------------------------------------------------------------------------------
...........................................AGCGGAGGCAGGTTGCT..............................................................................................................................................................................................171.000.00-------------------------------------------------------1.00----------------------------------------------------------
........................................GCCAGCGGAGGCAGGTTGCT..............................................................................................................................................................................................2011.002.00------------------------------------1.00-----------------------------------------------------------------------------
.........................................CCAGCGGAGGCAGGTTGATGTG...........................................................................................................................................................................................2211.001.00------1.00-----------------------------------------------------------------------------------------------------------
.............................................................................................AGGCCTAGTAAGTGGGGT...........................................................................................................................................1811.001.00-------------------------------------1.00----------------------------------------------------------------------------
.........................................CCAGCGGAGGCAGGTTGCTGT............................................................................................................................................................................................211.000.00------------------------------------------------------------------------------1.00-----------------------------------
..............................................GGAGGCAGGTTGATGACTA.........................................................................................................................................................................................191.000.00-----------------1.00------------------------------------------------------------------------------------------------
................................................................TTGTGCTTCCTTCTACAGC.......................................................................................................................................................................1911.001.00----------------------------------------------------1.00-------------------------------------------------------------
.......................................................................................................AGTGGGGTCGGGAGGCGGGCGTGGAGGGACC....................................................................................................................3111.001.00-----------1.00------------------------------------------------------------------------------------------------------
..................................................................................................................GAGGCGGGCGTGGAGGGAA.....................................................................................................................191.000.00--------------------------------------------------------------------------1.00---------------------------------------
....................................................AGGTTGATGTGTTTGAAAG...................................................................................................................................................................................191.000.00-----------------------------1.00------------------------------------------------------------------------------------
.......................................CGCCAGCGGAGGCAGGTTGAT..............................................................................................................................................................................................2111.001.00--------------------------------------------------1.00---------------------------------------------------------------
..........................................CAGCGGAGGCAGGTTGCT..............................................................................................................................................................................................181.000.00---1.00--------------------------------------------------------------------------------------------------------------
...................................................................................CAATATGAAAAGGCCTAG.....................................................................................................................................................1811.001.00--1.00---------------------------------------------------------------------------------------------------------------
........................................................................................................................GGCGTGGAGGGACCCAAG................................................................................................................181.000.00--------------------------------------------------------------------------------------------1.00---------------------
........................................GCCAGCGGAGGCAGGTTGA...............................................................................................................................................................................................1911.001.00---------------------------------------------------------------------1.00--------------------------------------------
........................................................................................................................GGCGTGGAGGGACCCCAA................................................................................................................181.000.00-------------------------------1.00----------------------------------------------------------------------------------
....................................TGGCGCCAGCGGAGGCAGGG..................................................................................................................................................................................................2011.001.001.00-----------------------------------------------------------------------------------------------------------------
...........................................AGCGGAGGCAGGTTGCTG.............................................................................................................................................................................................181.000.00--1.00---------------------------------------------------------------------------------------------------------------
......................................GCGCCAGCGGAGGCAGGTTG................................................................................................................................................................................................2011.001.00-----------------------------------------------------------------------------------------------1.00------------------
..........................................CAGCGGAGGCAGGTTGAAAG............................................................................................................................................................................................201.000.00---------------------------------------------------1.00--------------------------------------------------------------
......................................GCGCCAGCGGAGGCAGGTTGCT..............................................................................................................................................................................................2211.001.00----------------------------------1.00-------------------------------------------------------------------------------
...................................................CAGGTTGATGTGTTTGTG.....................................................................................................................................................................................1811.001.00-------------1.00----------------------------------------------------------------------------------------------------
........................................................................................................................GGCGTGGAGGGACCCAGG................................................................................................................181.000.00-------1.00----------------------------------------------------------------------------------------------------------
.........................................................................................GAAAAGGCCTAGTAAGTG...............................................................................................................................................1811.001.00--1.00---------------------------------------------------------------------------------------------------------------
.....................GCTTCAGTTCACACGTGGCG.................................................................................................................................................................................................................2011.001.00------------------------1.00-----------------------------------------------------------------------------------------
...........................................................................................................GGGTCGGGAGGCGGG................................................................................................................................1550.600.60-------------------------------------------0.20-----------------------------------------------------------------0.20--0.20-
.................................................................................................................GGAGGCGGGCGTGGA..........................................................................................................................1550.400.40--------------------------------------------0.20------------------------------------------------------------------0.20--
...........................................................................................................GGGTCGGGAGGCGGGGCGT............................................................................................................................1950.200.60---------------------------------------------0.20--------------------------------------------------------------------
.................................................................................................................GGAGGCGGGCGTGGACGC.......................................................................................................................1850.200.40-----------------------------------------------------------------------------------------------------------0.20------
...........................................................................................................GGGTCGGGAGGCGGGGG..............................................................................................................................1750.200.60-----------------------------------------------------------------------------------------------------------------0.20
...........................................................................................................................................CTGGAAGTTGCTGCAG...............................................................................................1650.200.20------------------------------------------------------------------------------------------------------------0.20-----
...............................................................................................................CGGGAGGCGGGCGTGG...........................................................................................................................1670.140.14-------------------0.14----------------------------------------------------------------------------------------------

Antisense strand
AGTGCGTGACGCTCGTCAGTGGCTTCAGTTCACACGTGGCGCCAGCGGAGGCAGGTTGATGTGTTTGTGCTTCCTTCTACAGCCAATATGAAAAGGCCTAGTAAGTGGGGTCGGGAGGCGGGCGTGGAGGGACCCACGTCTGGAAGTTGCTGCAGCCACCACGACGCTCTTCTACGGCTACGGCTTTGTCTCTGCTGGTATGGGGGTGGGAGCCTACGCGTAGGCCTTGGCCCTATTTCCTGGTAGAACC
..................................................(((......)))...((((..(((((((((.(((..........(((((........)))))........))))))))))))..))))................................................................................................................
..................................................51.........................................................................................142..........................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR040028(GSM532913)
G026N. (cervix)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR040010(GSM532895)
G529N. (cervix)		TAX577746(Rovira)
total RNA. (breast)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189785SRR040031(GSM532916)
G013T. (cervix)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		TAX577745(Rovira)
total RNA. (breast)		SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		GSM359196(GSM359196)
m3m7G_ip. (cell line)		GSM359177(GSM359177)
hela_nucl_a. (hela)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR040027(GSM532912)
G220T. (cervix)		SRR343334SRR189784SRR029124(GSM416753)
HeLa. (hela)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM532878(GSM532878)
G691T. (cervix)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM359174(GSM359174)
hela_5_1. (hela)		SRR040011(GSM532896)
G529T. (cervix)		GSM359175(GSM359175)
hela_5_pct. (hela)		SRR040016(GSM532901)
G645N. (cervix)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		GSM359176(GSM359176)
hela_chip_smrna_pure. (hela)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040007(GSM532892)
G601T. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR040039(GSM532924)
G531T. (cervix)		SRR040025(GSM532910)
G613T. (cervix)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR038854(GSM458537)
MM653. (cell line)		SRR040022(GSM532907)
G575N. (cervix)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR040006(GSM532891)
G601N. (cervix)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR029126(GSM416755)
143B. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577579(Rovira)
total RNA. (breast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR040035(GSM532920)
G001T. (cervix)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR040015(GSM532900)
G623T. (cervix)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
....................................................................TGGCTGTAGAAGGAAGC..................................................................................................................................................................... 1724.004.004.00-----------------------------------------------------------------------------------------------------------------
....................GGCTTCAGTTCACACCATC................................................................................................................................................................................................................... 192.250.00------------------2.25-----------------------------------------------------------------------------------------------
..........................................................................................................CCCGCCTCCCGACCCC................................................................................................................................ 1631.671.67-----------------------------------------0.33------------------------------------------------------------0.670.330.33---------
...............................................GAGGCAGGTTGATGTGACTG....................................................................................................................................................................................... 201.000.00-----------------------------------------------1.00------------------------------------------------------------------
...............................................................TGGCTGTAGAAGGAAGCACAAA..................................................................................................................................................................... 2211.001.00----------------------------------1.00-------------------------------------------------------------------------------
............................................................TGGCTGTAGAAGGAAGCACAAACAC..................................................................................................................................................................... 2511.001.00-----------------------------------------------------------------------------------------------------1.00------------
.................................................................................................................................................TGGTGGCTGCAGCAAC......................................................................................... 1670.290.29------------------------------------------0.29-----------------------------------------------------------------------
....................GTGTGAACTGAAGCC....................................................................................................................................................................................................................... 1540.250.25----------------------------------------------------------------------------------------------------------0.25-------
....................GGCTTCAGTTCACACCCAG................................................................................................................................................................................................................... 190.250.00---------------------------------------------------------------------------------------------------------0.25--------
...........................................................................................................CCCGCCTCCCGACCC................................................................................................................................ 1550.200.20--------------------------------------------------------------------------------------------------------------0.20---