ID: uc003dfd.2_intron_11_0_chr3_52727561_f
GENE: (12)
chr3:52727511-52727697+


(1)
AGO1.ip OTHER.mut 		(1)
AGO2.ip 		(6)
B-CELL 		(2)
BRAIN 		(9)
BREAST 		(23)
CELL-LINE 		(5)
CERVIX 		(6)
HEART 		(6)
HELA 		(1)
KIDNEY 		(8)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(26)
SKIN 		(1)
TESTES 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
CGGCTTCAATCTGGAAGAACTGGAAAAGAACAATGCACAGAGCATAAGAGGTGAGAATTGTGTGTCGCTGCTGTCTTCATCAGCTGACAGGCCAGTGGAGCTCTTACCTGTTTACATGGGCTTGCTTTCTTTCCCAGCCATCAAGGGCCCTCATTTGGCCAATAGCATCCTTTTCCAGTCTTCCGGT
...........................................................((.((((((((.((....)).)))).)))).)).....((((((..............))))))................................................................
..................................................51.......................................................................124.............................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR343335SRR343334DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189785SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR037938(GSM510476)
293Red. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR343336SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR390723(GSM850202)
total small RNA. (cell line)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR191591(GSM715701)
53genomic small RNA (size selected RNA from t. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR343337DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR040018(GSM532903)
G701N. (cervix)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR191419(GSM715529)
41genomic small RNA (size selected RNA from t. (breast)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191581(GSM715691)
104genomic small RNA (size selected RNA from . (breast)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM532874(GSM532874)
G699T. (cervix)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040006(GSM532891)
G601N. (cervix)		SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR038856(GSM458539)
D11. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR040027(GSM532912)
G220T. (cervix)		GSM532872(GSM532872)
G652T. (cervix)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
.....................................................................................................TCTTACCTGTTTACACATG...................................................................1978.000.0039.00--15.0016.00--5.00---------2.00----------------------1.00--------------------------------------------------------------
..........CTGGAAGAACTGGAAAAGAAC............................................................................................................................................................21110.0010.00----------------3.00-----1.00---1.001.00-----------1.00------------------------1.00--------------------1.00---1.00-------------
.....................................................................................................TCTTACCTGTTTACACAT....................................................................189.000.004.00--3.001.00-----------------------------------1.00--------------------------------------------------------------
..................................................GTGAGAATTGTGTGTCGCTGCTGTCTTCATCAGCTGACAGGCCAGTGGAGCTCTTACCTGTTTACATGGGCTTGCTTTCTTT.......................................................8218.008.00-----7.00----1.00--------------------------------------------------------------------------------------------
..........CTGGAAGAACTGGAAAAGAA.............................................................................................................................................................2018.008.00--------------1.00----3.00--------------------------------------1.00--1.001.00-----1.00----------------------------------
..........CTGGAAGAACTGGAAAAGAACAA..........................................................................................................................................................2317.007.00-7.00-----------------------------------------------------------------------------------------------------
.........TCTGGAAGAACTGGAAAAGAACAA..........................................................................................................................................................2417.007.00-7.00-----------------------------------------------------------------------------------------------------
......CAATCTGGAAGAACTGGAAAAGA..............................................................................................................................................................2317.007.00--2.00--------1.00------------2.00------2.00-----------------------------------------------------------------------
..........................................................................................................CCTGTTTACATGGGCTTGCTTTCTTTC......................................................2716.006.00------6.00------------------------------------------------------------------------------------------------
..................................................GTGAGAATTGTGTGTCGCTGCTGT.................................................................................................................2415.005.00--5.00----------------------------------------------------------------------------------------------------
..................................................GTGAGAATTGTGTGTCGCTGCTGTCTTCATCAGCTGACAGGCCAGTGGAGCTCTTACCTGTTTACATGGGCTTGCTTTCTTTCCCAG..................................................8715.005.00----------5.00--------------------------------------------------------------------------------------------
.........TCTGGAAGAACTGGAAAAGAAC............................................................................................................................................................2215.005.00-1.001.00--------------------1.00----2.00--------------------------------------------------------------------------
..................................................GTGAGAATTGTGTGTCGCTGCTGTCTTCATCAGCTGACAGGCCAGTGGAGCTCTTACCTGTTTACATGGGCTTGCTTTCTTTCCC....................................................8515.005.00-----5.00-------------------------------------------------------------------------------------------------
......................GAAAAGAACAATGCACAGAGCATAAGAG.........................................................................................................................................2815.005.00------------5.00------------------------------------------------------------------------------------------
.....................................................................................................TCTTACCTGTTTACACACG...................................................................194.000.001.00------2.00---------1.00-------------------------------------------------------------------------------------
.........TCTGGAAGAACTGGAAAAGAACA...........................................................................................................................................................2314.004.00-3.00-------1.00---------------------------------------------------------------------------------------------
............GGAAGAACTGGAAAAGAACAATG........................................................................................................................................................2314.004.00--3.00---------------------------1.00------------------------------------------------------------------------
.........TCTGGAAGAACTGGAAAAGAA.............................................................................................................................................................2114.004.00-----------2.00-1.00-------------------1.00---------------------------------------------------------------------
.....................................................................................................TCTTACCTGTTTACACATA...................................................................194.000.002.00---1.00--1.00-----------------------------------------------------------------------------------------------
..........CTGGAAGAACTGGAAAAG...............................................................................................................................................................1813.003.001.00----------1.00------------------------------------------------------------------------------------1.00------
.......AATCTGGAAGAACTGGAAAAGAAC............................................................................................................................................................2413.003.00---------1.00--------1.00--------------------------1.00---------------------------------------------------------
.......AATCTGGAAGAACTGGAAAAG...............................................................................................................................................................2113.003.00---------1.00-------------1.00----------------------------------------------------------1.00--------------------
.................................................................................................................ACATGGGCTTGCTTTCTTTCCC....................................................2213.003.00------3.00------------------------------------------------------------------------------------------------
...........TGGAAGAACTGGAAAAGAAC............................................................................................................................................................2013.003.00----------------------------------1.00------------------------------------1.00----------------------1.00--------
..................ACTGGAAAAGAACAATGCACAGAG.................................................................................................................................................2412.002.00------------------------------------------1.001.00-----------------------------------------------------------
...................CTGGAAAAGAACAATGCACAGAGCATAAGAGGTGAGAATTGTGTGTCGCTGCTGTCTT..............................................................................................................5812.002.00-----------------------------------------2.00-------------------------------------------------------------
.....TCAATCTGGAAGAACTGGA...................................................................................................................................................................1912.002.00--1.00------------------1.00---------------------------------------------------------------------------------
..........CTGGAAGAACTGGAAAAGA..............................................................................................................................................................1912.002.00-------------------------------------------------------------------------------------------1.00-----1.00-----
..............AAGAACTGGAAAAGAACAATGCACAGAGC................................................................................................................................................2912.002.00-----------------------------2.00-------------------------------------------------------------------------
.............GAAGAACTGGAAAAGAAC............................................................................................................................................................1812.002.00-1.00-------------------------------------------------------------------------------------------1.00---------
.......AATCTGGAAGAACTGGAAAAGAA.............................................................................................................................................................2312.002.00------------------1.00------------------------------------------------1.00-----------------------------------
........................................................................................................................................................................CCTTTTCCAGTCTTCCGGT1912.002.00----------------------1.00--------------------------------1.00-----------------------------------------------
.....................................................................................................TCTTACCTGTTTACATATG...................................................................192.000.00---1.001.00--------------------------------------------------------------------------------------------------
.......................AAAAGAACAATGCACAGAGCATAAGAGC........................................................................................................................................282.000.00---------------2.00---------------------------------------------------------------------------------------
............GGAAGAACTGGAAAAGAACAA..........................................................................................................................................................2112.002.00-1.00-----------1.00-----------------------------------------------------------------------------------------
....................................................................................................................TGGGCTTGCTTTCTTTCCCA...................................................2012.002.00------------------------------------------------------------------1.00------1.00-----------------------------
..................ACTGGAAAAGAACAATGCACAGAGCA...............................................................................................................................................2612.002.00--------------1.00-----------------------------------------------------------1.00----------------------------
.................AACTGGAAAAGAACAATGCACAGAGC................................................................................................................................................2612.002.00--1.00--------------------------------------------------------------------------------1.00-------------------
.....TCAATCTGGAAGAACTGGAAAAG...............................................................................................................................................................2312.002.00--1.00--------------------------------------------------------------------------1.00-------------------------
........................................................ATTGTGTGTCGCTGCTGTCTTCATCAGCTGACAGGCCAGTGGAGCTCTTACCTGTTTACATGGGCTTGCTTTCTTTCCC....................................................7912.002.00--------------------------------2.00----------------------------------------------------------------------
........................AAAGAACAATGCACAGAGCATAAG...........................................................................................................................................2412.002.00------------------------------------2.00------------------------------------------------------------------
.......AATCTGGAAGAACTGGAAAAGA..............................................................................................................................................................2212.002.00--1.00-----------------1.00----------------------------------------------------------------------------------
...................CTGGAAAAGAACAATGCACAGAGC................................................................................................................................................2412.002.00--------2.00----------------------------------------------------------------------------------------------
..................................................GTGAGAATTGTGTGTCGCT......................................................................................................................1911.001.00--1.00----------------------------------------------------------------------------------------------------
....................TGGAAAAGAACAATGCACAGAGCATAAGAG.........................................................................................................................................3011.001.00-------------------------------------------------1.00-----------------------------------------------------
.............GAAGAACTGGAAAAGAACA...........................................................................................................................................................1911.001.00--------------------------------------------------------------------------------------1.00----------------
.....TCAATCTGGAAGAACTGGAAAAGAACAA..........................................................................................................................................................2811.001.00--------------------------------------1.00----------------------------------------------------------------
........ATCTGGAAGAACTGGAAAAGAATA...........................................................................................................................................................2411.001.00-------------1.00-----------------------------------------------------------------------------------------
............GGAAGAACTGGAAAAGAAC............................................................................................................................................................1911.001.00---------------------------------------1.00---------------------------------------------------------------
.................AACTGGAAAAGAACAATGCACAGA..................................................................................................................................................2411.001.00--------------------1.00----------------------------------------------------------------------------------
...........TGGAAGAACTGGAAAAGAACAAT.........................................................................................................................................................2311.001.00--------------------------------------------------------------------------------1.00----------------------
...............AGAACTGGAAAAGAACAATG........................................................................................................................................................2011.001.00-----------------------------------------------------------1.00-------------------------------------------
................GAACTGGAAAAGAACAATGC.......................................................................................................................................................2011.001.00---------------------------------------------------1.00---------------------------------------------------
........ATCTGGAAGAACTGGAAAAGAA.............................................................................................................................................................2211.001.00---------------------------------------------------------------------------1.00---------------------------
...........TGGAAGAACTGGAAAAGA..............................................................................................................................................................1811.001.00-------------------------------------------------------------------------------1.00-----------------------
........ATCTGGAAGAACTGGAAA.................................................................................................................................................................1811.001.00--------------------------------------1.00----------------------------------------------------------------
.....................................................................................................TCTTACCTGTTTACACTTG...................................................................191.000.001.00------------------------------------------------------------------------------------------------------
..................ACTGGAAAAGAACAATGCACAGAGC................................................................................................................................................2511.001.00--1.00----------------------------------------------------------------------------------------------------
...................CTGGAAAAGAACAATGCACAGAG.................................................................................................................................................2311.001.00----------------------------------------------------1.00--------------------------------------------------
..........CTGGAAGAACTGGAAAAGAACAATGCACAGAG.................................................................................................................................................3211.001.00-----------------------------------------------------------------------------------------------1.00-------
..........CTGGAAGAACTGGAAAAGAACAAT.........................................................................................................................................................2411.001.00------------------------------------------1.00------------------------------------------------------------
.........TCTGGAAGAACTGGAAAAGA..............................................................................................................................................................2011.001.00-----------1.00-------------------------------------------------------------------------------------------
.......AATCTGGAAGAACTGGAAA.................................................................................................................................................................1911.001.00------------------------------------------------------1.00------------------------------------------------
..............................................................................................................................................................CCAATAGCATCCTTTCCAG..........191.000.00---1.00---------------------------------------------------------------------------------------------------
..................ACTGGAAAAGAACAATGCACAGAGCATAAGAG.........................................................................................................................................3211.001.00--------------------------------------------------------------------------------------------1.00----------
....................TGGAAAAGAACAATGCACAGAGCA...............................................................................................................................................2411.001.00---------------------------------1.00---------------------------------------------------------------------
.....................................................................................................TCTTACCTGTTTACACATT...................................................................191.000.001.00------------------------------------------------------------------------------------------------------
.......AATCTGGAAGAACTGGAAAA................................................................................................................................................................2011.001.00---------------------1.00---------------------------------------------------------------------------------
................GAACTGGAAAAGAACAATGCACA....................................................................................................................................................2311.001.00--------------------------------------------------------1.00----------------------------------------------
..................ACTGGAAAAGAACAATGCACAGCGCA...............................................................................................................................................261.000.00--------------1.00----------------------------------------------------------------------------------------
...........................................................................TTCATCAGCTGACAGGCCAGTG..........................................................................................2211.001.00---------1.00---------------------------------------------------------------------------------------------
......................................................................................................CTTACCTGTTTACATTCCG..................................................................191.000.00-------1.00-----------------------------------------------------------------------------------------------
..................ACTGGAAAAGAACAATGCAC.....................................................................................................................................................2011.001.00-------------------------1.00-----------------------------------------------------------------------------
............GGAAGAACTGGAAAAGAACAATGCAC.....................................................................................................................................................2611.001.00--1.00----------------------------------------------------------------------------------------------------
........ATCTGGAAGAACTGGAAAGGA..............................................................................................................................................................2111.001.00-------------------------------------1.00-----------------------------------------------------------------
.......AATCTGGAAGAACTGGAAAAGAACAA..........................................................................................................................................................2611.001.00-------------1.00-----------------------------------------------------------------------------------------
..............................................................................................................TTTACATGGGCTTGCTTTAT.........................................................201.000.00------------------------------------------------------------------------1.00------------------------------
...........TGGAAGAACTGGAAAAGAA.............................................................................................................................................................1911.001.00--------------------------------------------1.00----------------------------------------------------------
........ATCTGGAAGAACTGGAAAA................................................................................................................................................................1911.001.00---------------------1.00---------------------------------------------------------------------------------
......CAATCTGGAAGAACTGGAAAAGAACAATGC.......................................................................................................................................................3011.001.00---------------------------------------------------------1.00---------------------------------------------
.........TCTGGAAGAACTGGAAAAGAATA...........................................................................................................................................................2311.004.00---------1.00---------------------------------------------------------------------------------------------
...CTTCAATCTGGAAGAACTGGA...................................................................................................................................................................2111.001.00--------------------------------------------------1.00----------------------------------------------------
...........TGGAAGAACTGGAAAAGAACAATGCA......................................................................................................................................................2611.001.00--1.00----------------------------------------------------------------------------------------------------
.........TCTGGAAGAACTGGAAAAGAACAATGCACAG...................................................................................................................................................3111.001.00-----------------------------------------------------1.00-------------------------------------------------
.........TCTGGAAGAACTGGAAAAGAACAATGCACAGA..................................................................................................................................................3211.001.00---------------------------------------------------------------------------------1.00---------------------
.........................AAGAACAATGCACAGAGCTATG............................................................................................................................................221.000.001.00------------------------------------------------------------------------------------------------------
.......................AAAAGAACAATGCACAGAG.................................................................................................................................................1911.001.00--------------1.00----------------------------------------------------------------------------------------
...........TGGAAGAACTGGAAAAGAACAATGC.......................................................................................................................................................2511.001.00------------------1.00------------------------------------------------------------------------------------
......................................................................................................................................................................ATCCTTTTCCAGTCTTCCGGT2111.001.00-----------------------------------------------------------------1.00-------------------------------------
......CAATCTGGAAGAACTGGAAAAGAA.............................................................................................................................................................2411.001.00----------------------------------------------------------------------1.00--------------------------------
.....TCAATCTGGAAGAACTGGAAAAGAA.............................................................................................................................................................2511.001.00-------------1.00-----------------------------------------------------------------------------------------
........................AAAGAACAATGCACAGAG.................................................................................................................................................1811.001.00----------------------------------1.00--------------------------------------------------------------------
..........................................................................................................................TGCTTTCTTTCCCAGCCATCAAG..........................................2311.001.00---------------1.00---------------------------------------------------------------------------------------
.....................................................................................................TCTTACCTGTTTACATCTG...................................................................191.000.00---1.00---------------------------------------------------------------------------------------------------
........ATCTGGAAGAACTGGAAAAGAAC............................................................................................................................................................2311.001.00-----------------------------------------------1.00-------------------------------------------------------
........................AAAGAACAATGCACAGAGCATAAGAG.........................................................................................................................................2611.001.00-----------------------1.00-------------------------------------------------------------------------------
.........................................................................................................................................CCATCAAGGGCCCTCATTTG..............................2011.001.00---------------------------------------------------------------------------------------1.00---------------
.........TCTGGAAGAACTGGAAAAGAAT............................................................................................................................................................2211.004.00-1.00-----------------------------------------------------------------------------------------------------
...............AGAACTGGAAAAGAACAATGCACAGAG.................................................................................................................................................2711.001.00------------------------------------------------------------------------------------------1.00------------
.....TCAATCTGGAAGAACTGGATT.................................................................................................................................................................2111.002.00----------------------------------------------------------------------------------------1.00--------------
..........CTGGAAGAACTGGAAAAGAACAATGCAC.....................................................................................................................................................2811.001.00------------------------------------------------------------------------------1.00------------------------
......CAATCTGGAAGAACTGGAAA.................................................................................................................................................................2011.001.00---------1.00---------------------------------------------------------------------------------------------
........................................................................................AGGCCAGTGGAGCTCGGG.................................................................................181.000.00-------------------------------------1.00-----------------------------------------------------------------
.......AATCTGGAAGAACTGGAAAAGT..............................................................................................................................................................2211.003.00--------------------1.00----------------------------------------------------------------------------------
.........TCTGGAAGAACTGGAAAAGAAAA...........................................................................................................................................................2311.004.00-1.00-----------------------------------------------------------------------------------------------------
......................GAAAAGAACAATGCACAGAGCATAAGAGCC.......................................................................................................................................3011.005.00---------------------------------------------------------------1.00---------------------------------------
...................CTGGAAAAGAACAATGCACAGAGCATAAGAGCC.......................................................................................................................................331.000.00------------------------------------------------------------------------------------1.00------------------
..........CTGGAAGAACTGGAAAAGAACAATGCACAGAGC................................................................................................................................................3311.001.00----------------------------------------------1.00--------------------------------------------------------
............GGAAGAACTGGAAAAGAACA...........................................................................................................................................................2011.001.00------------------------------1.00------------------------------------------------------------------------
................................................................................................................................................................AATAGCATCCTTTTCCAGTCTTC....2311.001.00------------------------------------------------1.00------------------------------------------------------
..........................AGAACAATGCACAGAGC................................................................................................................................................1720.500.50-------------------------------------------0.50-----------------------------------------------------------
...........TGGAAGAACTGGAAAAG...............................................................................................................................................................1720.500.50--------------------------------------------------------------------------------------------------0.50----
............................................TAAGAGGTGAGAATTGT..............................................................................................................................1730.330.33----------------------------------------------------------------------------------------------------0.33--
..............AAGAACTGGAAAAGAAC............................................................................................................................................................1730.330.33---------------------------------------------------------------------------------------------------0.33---
...................CTGGAAAAGAACAATGC.......................................................................................................................................................1740.250.25--------------------------------------------0.25----------------------------------------------------------
............................................................................................CAGTGGAGCTCTTAC................................................................................1550.200.20-----------------------------------------------------------------------------------------------------0.20-

Antisense strand
CGGCTTCAATCTGGAAGAACTGGAAAAGAACAATGCACAGAGCATAAGAGGTGAGAATTGTGTGTCGCTGCTGTCTTCATCAGCTGACAGGCCAGTGGAGCTCTTACCTGTTTACATGGGCTTGCTTTCTTTCCCAGCCATCAAGGGCCCTCATTTGGCCAATAGCATCCTTTTCCAGTCTTCCGGT
...........................................................((.((((((((.((....)).)))).)))).)).....((((((..............))))))................................................................
..................................................51.......................................................................124.............................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR343335SRR343334DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189785SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR037938(GSM510476)
293Red. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR343336SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR390723(GSM850202)
total small RNA. (cell line)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR191591(GSM715701)
53genomic small RNA (size selected RNA from t. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR343337DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR040018(GSM532903)
G701N. (cervix)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR191419(GSM715529)
41genomic small RNA (size selected RNA from t. (breast)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191581(GSM715691)
104genomic small RNA (size selected RNA from . (breast)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM532874(GSM532874)
G699T. (cervix)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040006(GSM532891)
G601N. (cervix)		SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR038856(GSM458539)
D11. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR040027(GSM532912)
G220T. (cervix)		GSM532872(GSM532872)
G652T. (cervix)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
.....................................................................................................................................................................CGGAAGACTGGAAAAGGATG.. 2014.004.00--------4.00----------------------------------------------------------------------------------------------
...............................................................................GTAAGAGCTCCACTGGCCTGTCAGCTGA................................................................................ 2812.002.00-----------------------------------2.00-------------------------------------------------------------------
........................................................................................................................................................................ACCGGAAGACTGGAAAAGG 1911.001.00-------------------------1.00-----------------------------------------------------------------------------
............................................................................................................................................................GGCCAATAGCATCCTTGG............. 181.000.00----------------------1.00--------------------------------------------------------------------------------
..............................................................................................................................TTCTTTCCCAGCCATCATGG......................................... 201.000.00------------------------------------------------------------1.00------------------------------------------
....................................................................CTGGCCTGTCAGCTGATGAAGACAGCA............................................................................................ 2711.001.00--------------------------1.00----------------------------------------------------------------------------
.................................................................................AGCTGACAGGCCAGTGGAGTA..................................................................................... 211.000.00---------------------------------------------------------------------1.00---------------------------------
...............................................................................................................................................................CAATAGCATCCTTTTCTTT......... 191.000.00----------------------------------------------------------------------------1.00--------------------------
............................................................................................GTAAGAGCTCCACTG................................................................................ 1550.200.20------------------------------------------------------------------------------------------------------0.20