ID: uc003ddm.2_intron_3_0_chr3_52326586_f
GENE: (4)
chr3:52326536-52327111+


(1)
BRAIN 		(2)
BREAST 		(11)
CELL-LINE 		(2)
CERVIX 		(2)
HEART 		(12)
LIVER 		(2)
OTHER 		(5)
SKIN 		(1)
TESTES

Sense strand
GGCCGAGGCACTGGGCTACCAGGCTGTGGTGCTGAGTGCAGCCATGCAAGGTGATGTAAAAAGTATGGCCCAGTTCTACGGGCTGCTGGCCCATGTGGCTAGAACCCGCCTCACCCCATCCATGGCTGGGGCTTCTGTGGAGGAAGATGCACAGCTCCATGAGCTGGCAGCTGAGCTTCAGATCCCAGACCTGCAGCTGGAGGAGGCTCTGGAGACCATGGCATGGGGAAGGGGCCCAGTCTGCCTGCTGGCTGGTGGCGAGCCCACAGTACAGCTGCAGGGCTCGGGCAGGGGTGGCCGGAACCAGGAACTGGCCCTGCGTGTTGGAGCAGAGTTGAGAAGGTGGCCGCTGGGGCCGATAGATGTGCTGTTTTTGAGCGGTGGCACCGATGGGCAGGATGGGCCCACAGAGGCTGCTGGGGCCTGGGTCACACCTGAGCTTGCCAGCCAGGCTGCAGCTGAGGGCCTGGACATAGCCACCTTCCTAGCCCACAATGACTCACATACCTTCTTCTGCTGCCTCCAGGGTGGGGCACACCTGCTGCACACAGGGATGACAGGTACCAATGTCATGGA
............................................((((.(((((.((.........(((((........))))).((((((.....)))))).....)).)))))((.((((((((....)))...)))))))....)))).........................................................................................................................................................................................................................................................................................................................................................................................................................................
............................................45.................................................................................................................160..............................................................................................................................................................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR343337SRR189787SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)		TAX577746(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR040009(GSM532894)
G727T. (cervix)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189782SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR038857(GSM458540)
D20. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		GSM359196(GSM359196)
m3m7G_ip. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR040008(GSM532893)
G727N. (cervix)		SRR343335DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
........................................................................................................................................GTGGAGGAAGATGCACAGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................2014.004.001.001.00-1.00----------------------1.00----------------
................................................AGGTGATGTAAAAAGTATGGCCCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.003.00----1.00-----2.00--------------------------------
...........................................................................................................................................................................................................AGGCTCTGGAGACCATGGCATG...............................................................................................................................................................................................................................................................................................................................................................2213.003.001.00-1.00-1.00--------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACACAGGGATGACAGGTACC...........2213.003.002.001.00-----------------------------------------
................................................AGGTGATGTAAAAAGTATGGCCCAGTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.003.002.001.00-----------------------------------------
..............................................................................................................................................................ATGAGCTGGCAGCTGAGCTTCAGA..........................................................................................................................................................................................................................................................................................................................................................................................................2413.003.00--2.00--------1.00-------------------------------
...........................................................................................................................................................................................................AGGCTCTGGAGACCATGGCA.................................................................................................................................................................................................................................................................................................................................................................2013.003.00--3.00----------------------------------------
......................................................................................................................................................................................................GGAGGAGGCTCTGGAGACCATGGCA.................................................................................................................................................................................................................................................................................................................................................................2512.002.001.001.00-----------------------------------------
....................AGGCTGTGGTGCTGAGTGCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002.002.00------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................TAGATGTGCTGTTTTTGAGCGGTGGC...............................................................................................................................................................................................2612.002.00---------------2.00---------------------------
...........................................ATGCAAGGTGATGTACAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................182.000.00-----------------2.00-------------------------
.......................................................................................................................................................................................CCCAGACCTGCAGCTGGAGGAGGCTCTGGAGACCAT.....................................................................................................................................................................................................................................................................................................................................................................3612.002.00---------------------1.00------------1.00--------
...................................................................................................................................................................................................GCTGGAGGAGGCTCTGGAG..........................................................................................................................................................................................................................................................................................................................................................................1912.002.002.00------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGCACACAGGGATGACA.................2012.002.001.001.00-----------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAGCTGAGGGCCTGGAC........................................................................................................2112.002.00---2.00---------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACCTTCCTAGCCCACAAT................................................................................2012.002.00----------------2.00--------------------------
..........................................................................................................................................................................................................................................................................................................................................AGAGTTGAGAAGGTGGCCGCT.................................................................................................................................................................................................................................2112.002.001.001.00-----------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................GCCGATAGATGTGCTGTTTTT.........................................................................................................................................................................................................2112.002.00-2.00-----------------------------------------
..........................................................................................................................TGGCTGGGGCTTCTGTGGAGGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002.00--2.00----------------------------------------
.............................................................................................................................................................................................................................................................................................................................................GTTGAGAAGGTGGCCGCT.................................................................................................................................................................................................................................1812.002.001.001.00-----------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGCACACAGGGATGAC..................1912.002.002.00------------------------------------------
...............................................AAGGTGATGTAAAAAGTATGGCCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.002.002.00------------------------------------------
........................................................................................................................................................................................................................................................................................................................................GCAGAGTTGAGAAGGTGGCC....................................................................................................................................................................................................................................2012.002.00---2.00---------------------------------------
................................................................................................................................................................................................................................................................................................................................GTGTTGGAGCAGAGTTGAGAAGGTGGC.....................................................................................................................................................................................................................................2711.001.00-----------------------1.00-------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTCTGCTGCCTCCAGG.................................................1911.001.00-1.00-----------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCAGGCTGCAGCTGAGGGC..............................................................................................................2111.001.00---1.00---------------------------------------
.........................................................................................................................................................................................................................................................................................................CCGGAACCAGGAACTGGCCCTGCG...............................................................................................................................................................................................................................................................2411.001.00-1.00-----------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACAGGGATGACAGGTA.............1911.001.00-----1.00-------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................CCGCTGGGGCCGATAGATGTA.................................................................................................................................................................................................................211.000.00---------1.00---------------------------------
................................................................................................................................................................................................................................................................................AGCTGCAGGGCTCGGGCT..............................................................................................................................................................................................................................................................................................181.000.00-----------------------------1.00-------------
......................................................................................................................................................................................................GGAGGAGGCTCTGGAGACCATGG...................................................................................................................................................................................................................................................................................................................................................................2311.001.00-1.00-----------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGCCTGGACATAGCCATA...............................................................................................201.000.001.00------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACAATGACTCACATACCTTCTTCT.............................................................2611.001.00-1.00-----------------------------------------
..........................................................................................................................................................................................................GAGGCTCTGGAGACCATGGCATG...............................................................................................................................................................................................................................................................................................................................................................2311.001.001.00------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATAGCCACCTTCCTAG........................................................................................1911.001.001.00------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACTCACATACCTTCT................................................................1811.001.001.00------------------------------------------
........................................................................................................................................................AGCTCCATGAGCTGGCAGCTGAGCT...............................................................................................................................................................................................................................................................................................................................................................................................................2511.001.00-1.00-----------------------------------------
..................................................................................................................................GCTTCTGTGGAGGAAGATGCAC........................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001.00-1.00-----------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGCTGCAGCTGAGGATA.............................................................................................................191.000.00-1.00-----------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACACAGGGATGACAGGTACC...........2311.001.001.00------------------------------------------
...................................................................................................................................................................................................GCTGGAGGAGGCTCTGGAGACCATGGCA.................................................................................................................................................................................................................................................................................................................................................................2811.001.001.00------------------------------------------
.......GCACTGGGCTACCAGGCTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00-----1.00-------------------------------------
.....................................................................CCAGTTCTACGGGCTGCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00-1.00-----------------------------------------
...............................................................................................................................................................TGAGCTGGCAGCTGAGCTTC.............................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00-1.00-----------------------------------------
..............................................................................................................................................................ATGAGCTGGCAGCTGAGCTTCA............................................................................................................................................................................................................................................................................................................................................................................................................2211.001.001.00------------------------------------------
...........................................................................................................................................................................................................AGGCTCTGGAGACCATGGCATA...............................................................................................................................................................................................................................................................................................................................................................221.000.001.00------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................TTGAGCGGTGGCACCGATGGGCA....................................................................................................................................................................................2311.001.00--1.00----------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................AGATGTGCTGTTTTTTGA......................................................................................................................................................................................................181.000.00----------------------------1.00--------------
....................................................................................................................................................................................................................................................................................................................................................................CGATAGATGTGCTGTTTTTGAGCGGTG.................................................................................................................................................................................................2711.001.00-1.00-----------------------------------------
...............................................................................................................................GGGGCTTCTGTGGAGGAAGATGCACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001.001.00------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGGGATGACAGGTACCAA.........2111.001.001.00------------------------------------------
...........................................................................................................................................................TCCATGAGCTGGCAGCTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.001.00------------------------------------------
.................................................GGTGATGTAAAAAGTATGGCCCAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001.00--1.00----------------------------------------
....................AGGCTGTGGTGCTGACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................171.000.00------------------------1.00------------------
..................................................................................................................................................................................................................................................................................CTGCAGGGCTCGGGCAGGGGTGGCCGG...................................................................................................................................................................................................................................................................................2711.001.00-----1.00-------------------------------------
........................................................................................................................................GTGGAGGAAGATGCACAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00-1.00-----------------------------------------
.......................................................................................................................................................................................................................................................................................................GGCCGGAACCAGGAACTGG......................................................................................................................................................................................................................................................................1911.001.00-1.00-----------------------------------------
.........................................................................................................................................................GCTCCATGAGCTGGCAGCTGAGCT...............................................................................................................................................................................................................................................................................................................................................................................................................2411.001.00------1.00------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................CGCTGGGGCCGATAGATGTTCT...............................................................................................................................................................................................................221.000.00--1.00----------------------------------------
...............................................................................................................................................................................................TGCAGCTGGAGGAGGCTCTGG............................................................................................................................................................................................................................................................................................................................................................................2111.001.001.00------------------------------------------
.................................................................................................................................................................................................................................................................................GCTGCAGGGCTCGGGCAGGGGTGGCCG....................................................................................................................................................................................................................................................................................2711.001.00-1.00-----------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACACAGGGATGACAGGTA.............2011.001.00-1.00-----------------------------------------
.........................................................................................................................................................................................................................................................................................................CCGGAACCAGGAACTGGCC....................................................................................................................................................................................................................................................................1911.001.00--1.00----------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGCACACAGGGATGACAGATA.............241.000.001.00------------------------------------------
..........................................................................................................................................................................................AGACCTGCAGCTGGAGGAGGCT................................................................................................................................................................................................................................................................................................................................................................................2211.001.001.00------------------------------------------
.........................................................................................................................ATGGCTGGGGCTTCTGTGGAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001.001.00------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................GCTGGGGCCGATAGATGTGC................................................................................................................................................................................................................2011.001.001.00------------------------------------------
..............................................................................................................................................................ATGAGCTGGCAGCTGAGCTTC.............................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00-------------1.00-----------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGCAGCTGAGGGCCTGGACATAGC...................................................................................................2711.001.001.00------------------------------------------
......................................................................................................................................................................................................GGAGGAGGCTCTGGAGAC........................................................................................................................................................................................................................................................................................................................................................................1811.001.001.00------------------------------------------
.....................................................................................................................................................................................................................................................................................CAGGGCTCGGGCAGGGGTGGCC.....................................................................................................................................................................................................................................................................................2211.001.001.00------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................GTGGCACCGATGGGCAGGATGGGCC...........................................................................................................................................................................2511.001.00-1.00-----------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................GTGCTGTTTTTGAGCGGTGGCAC.............................................................................................................................................................................................2311.001.001.00------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................AGAGTTGAGAAGGTGGCCG...................................................................................................................................................................................................................................1911.001.00-------------1.00-----------------------------
...............................................................................................................................GGGGCTTCTGTGGAGGAAGATGCACAGCTA...................................................................................................................................................................................................................................................................................................................................................................................................................................301.000.00-1.00-----------------------------------------
..............................................................................................................................................................................................................................................................................ACAGCTGCAGGGCTCGGGCAGGGGTGGC......................................................................................................................................................................................................................................................................................2811.001.00---------1.00---------------------------------
....................................................................................................................................................................................................CTGGAGGAGGCTCTGGAGACCATGGCATG...............................................................................................................................................................................................................................................................................................................................................................2911.001.00-1.00-----------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAATGACTCACATACCTTCTTCT.............................................................2511.001.00-1.00-----------------------------------------
.................................................................................................................................................................................................................................................................................................................................................AGAAGGTGGCCGCTGGGG.............................................................................................................................................................................................................................1811.001.00------------------1.00------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACAGGGATGACAGGTACCAACGT......261.000.00--------------1.00----------------------------
........................................................................................................................................................................................................................................................................................................................................................................AGATGTGCTGTTTTTGAGCGGTG.................................................................................................................................................................................................2311.001.001.00------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCACACAGGGATGACAGGTACCA..........2511.001.001.00------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................TGTTTTTGAGCGGTGGCACCGATGGGCA....................................................................................................................................................................................2811.001.00-1.00-----------------------------------------
..........................................................................................................................................GGAGGAAGATGCACAGAGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00------1.00------------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCACACAGGGATGACAGGTACC...........2511.001.001.00------------------------------------------
.........................................................................................................................................................GCTCCATGAGCTGGCAGCTGAGCTTC.............................................................................................................................................................................................................................................................................................................................................................................................................2611.001.00-1.00-----------------------------------------
.......................................................................................................................................................................................................GAGGAGGCTCTGGAGACCATGGG..................................................................................................................................................................................................................................................................................................................................................................231.000.00-1.00-----------------------------------------
...................................................................................................................................CTTCTGTGGAGGAAGATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00-------1.00-----------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACACAGGGATGACAGGTACCAA.........2411.001.001.00------------------------------------------
..............................................................................................................................................................................................................CTCTGGAGACCATGGCATGGGGAA..........................................................................................................................................................................................................................................................................................................................................................2411.001.00--1.00----------------------------------------
...............................................................................................TGGCTAGAACCCGCCTCACCCCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001.00-1.00-----------------------------------------
.................................................................................................................................................................................................................................................................................................................AGGAACTGGCCCTGCGTGTT...........................................................................................................................................................................................................................................................2011.001.001.00------------------------------------------
.........................................................................................................................ATGGCTGGGGCTTCTGTGGAGGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001.00---1.00---------------------------------------
................................................................................................................................................................................................................................................................................AGCTGCAGGGCTCGGGCAGGGGTGGCCG....................................................................................................................................................................................................................................................................................2811.001.00-1.00-----------------------------------------
............................................................................................................................................................................................................................................................................................................................................AGTTGAGAAGGTGGCCGCT.................................................................................................................................................................................................................................1911.001.00-------1.00-----------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................GATAGATGTGCTGTTTTT.........................................................................................................................................................................................................1811.001.001.00------------------------------------------
................................................................................................................................................................................................................................................................................AGCTGCAGGGCTCGGGCAGGGGTGGCCGG...................................................................................................................................................................................................................................................................................2911.001.00----1.00--------------------------------------
..................................................................................................................................GCTTCTGTGGAGGAAGATGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.001.00------------------------------------------
.................................................................................................................................................................................................................................................................................................................AGGAACTGGCCCTGCGTG.............................................................................................................................................................................................................................................................1811.001.00--1.00----------------------------------------
........................................................................................................................CATGGCTGGGGCTTCTGTGGAGGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001.00-1.00-----------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTTCTTCTGCTGCTCAG....................................................191.000.00--------------------1.00----------------------
....................AGGCTGTGGTGCTGAGTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00-----------1.00-------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGCAGCTGAGGGCCTGGACGAAC....................................................................................................261.000.001.00------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGACATAGCCACCTTCCTAG........................................................................................2211.001.001.00------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATAGCCACCTTCCTA.........................................................................................1811.001.00-1.00-----------------------------------------
....................AGGCTGTGGTGCTGAGTGCAGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001.00-1.00-----------------------------------------
............................................................................................................................................................................................................................................................................................................................................AGTTGAGAAGGTGGCCGC..................................................................................................................................................................................................................................1811.001.001.00------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGATGACAGGTACCAATG.......2011.001.00---1.00---------------------------------------
............................................................................................................................GCTGGGGCTTCTGTGGAGGAAGATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001.00------1.00------------------------------------
............GGGCTACCAGGCTGTGGTGCTGAGTGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001.00-1.00-----------------------------------------
...........................................................................................................................................................................................................AGGCTCTGGAGACCATGGCATGGGGAAG.........................................................................................................................................................................................................................................................................................................................................................2811.001.00-1.00-----------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................GCCGATAGATGTGCTGTTTTTG........................................................................................................................................................................................................2211.001.00-1.00-----------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATGACAGGTACCAATG.......1911.001.001.00------------------------------------------
....................................................................................................................................TTCTGTGGAGGAAGATGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00---1.00---------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGCACACAGGGATGACAGGTACC...........2611.001.00-1.00-----------------------------------------
..........................................................................................................................................................................................................................................................................................................................................AGAGTTGAGAAGGTGGCGGCT.................................................................................................................................................................................................................................211.000.00----1.00--------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGGATGACAGGTACCAATGTC.....2411.001.00-1.00-----------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................CCGATAGATGTGCTGTTTTTGAGCGGTGGA...............................................................................................................................................................................................301.000.00---------------------------------1.00---------
........................................................................................................................................................................................................................................................................................................................................................................AGATGTGCTGTTTTTGAGCGGTGG................................................................................................................................................................................................2411.001.00---1.00---------------------------------------
.............................................................................................................................................................................................................................................................................................................AACCAGGAACTGGCCCTGCGTG.............................................................................................................................................................................................................................................................2211.001.00----1.00--------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACAGGGATGACAGGTACCA..........2211.001.00-1.00-----------------------------------------
......................................................................................................................................................................................................GGAGGAGGCTCTGGAGACCATGGC..................................................................................................................................................................................................................................................................................................................................................................2411.001.001.00------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCTGAGGGCCTGGAC........................................................................................................1811.001.00------------------------------------1.00------
...........TGGGCTACCAGGCTGTGGTGCTGAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001.00--1.00----------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAGGGATGACAGGTAC............1911.001.001.00------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCTTGCCAGCCAGGCTGCA.......................................................................................................................2211.001.001.00------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATGACAGGTACCAATGT......2011.001.00--1.00----------------------------------------
.......................................................................................................................................................................................CCCAGACCTGCAGCTGGAGGAGGC.................................................................................................................................................................................................................................................................................................................................................................................2411.001.00-1.00-----------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGCACACAGGGATGACAGG...............2211.001.001.00------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................GGCACCGATGGGCAGGATGGG.............................................................................................................................................................................2111.001.00-1.00-----------------------------------------
....................................................................................................................................................................................................................................................................................GCAGGGCTCGGGCAGGGGTGGCCGGAA.................................................................................................................................................................................................................................................................................2711.001.00---1.00---------------------------------------
...........................................................................................................................................................................................................................................................................................................................................GAGTTGAGAAGGTGGCCGC..................................................................................................................................................................................................................................1911.001.001.00------------------------------------------
..................................................................................................................................................................................................AGCTGGAGGAGGCTCTGGAGAC........................................................................................................................................................................................................................................................................................................................................................................2211.001.00-------1.00-----------------------------------
................................................................ATGGCCCAGTTCTACGGGCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001.00-------------------------------1.00-----------
...........................................................................................................................................................................................................................................................................................................................................................................................GGTGGCACCGATGGGCAGGATGG..............................................................................................................................................................................2311.001.00-1.00-----------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCTGAGGGCCTGGACATAGCCACCCTCC...........................................................................................301.000.00--------------1.00----------------------------
............................................................................................................................................................................................................................................................................................................................................................................................GTGGCACCGATGGGCAGGATGGG.............................................................................................................................................................................2311.001.00-1.00-----------------------------------------
...................................................................................................................................................................................................GCTGGAGGAGGCTCTGGAGACCATG....................................................................................................................................................................................................................................................................................................................................................................2511.001.001.00------------------------------------------
.......................................................................AGTTCTACGGGCTGCAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00------------1.00------------------------------
........................................................................................................................................................................................................AGGAGGCTCTGGAGACCATGGCATG...............................................................................................................................................................................................................................................................................................................................................................2511.001.001.00------------------------------------------
...........................................ATGCAAGGTGATGTAAAAAGTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001.001.00------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................GAGTTGAGAAGGTGGCCGCT.................................................................................................................................................................................................................................2011.001.001.00------------------------------------------
.........................................................................................................................................................................................CAGACCTGCAGCTGGAGGAGG..................................................................................................................................................................................................................................................................................................................................................................................2111.001.001.00------------------------------------------
....................AGGCTGTGGTGCTGAGTGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................201.000.001.00------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................AGGTGGCCGCTGGGGTG...........................................................................................................................................................................................................................171.000.00-------------------1.00-----------------------
........................................................................................................................................................................................................................................................................................................................................GCAGAGTTGAGAAGGTGGCCGC..................................................................................................................................................................................................................................2211.001.00-----1.00-------------------------------------
............................................................AAGTATGGCCCAGTTCTAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.001.00------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAGCTGAGGGCCTGGACAT......................................................................................................2311.001.00---1.00---------------------------------------
...................................................................................................................................................................................................GCTGGAGGAGGCTCTGGAGACC.......................................................................................................................................................................................................................................................................................................................................................................2211.001.00---------------------------1.00---------------
...........................................................................CTACGGGCTGCTGGCCCATGTGGCTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001.00------1.00------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................TTTTTGAGCGGTGGCACCGATG........................................................................................................................................................................................2211.001.00---1.00---------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCACATACCTTCTTCTGC...........................................................2011.001.001.00------------------------------------------
..........................................................................................................................................................................................................GAGGCTCTGGAGACCATGGCA.................................................................................................................................................................................................................................................................................................................................................................2111.001.001.00------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................AGGTGGCCGCTGGGGCCGATAGATGTGC................................................................................................................................................................................................................2811.001.001.00------------------------------------------
.......................................................................................................................................TGTGGAGGAAGATGCACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................1820.500.500.50------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGCAGCTGAGGGCCTGG..........................................................................................................2020.500.50--0.50----------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGATGACAGGTACCAA.........1820.500.500.50------------------------------------------
...................................................................................................................................................................................................GCTGGAGGAGGCTCTGGA...........................................................................................................................................................................................................................................................................................................................................................................1820.500.50-------------------------------------0.50-----
...........................................................................................................................................................................................................................................................................................TCGGGCAGGGGTGGC......................................................................................................................................................................................................................................................................................1530.330.33--------------------------------------0.33----
............................................................................................................................GCTGGGGCTTCTGTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................1840.250.25----------------------------------------0.25--
.............................................................................................................................................................................................CCTGCAGCTGGAGGAGG..................................................................................................................................................................................................................................................................................................................................................................................1740.250.25---------------------------------------0.25---
.....................................................................................................................................TCTGTGGAGGAAGATGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................1840.250.250.25------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGAGGGCCTGGAC........................................................................................................1690.110.11------------------------------------------0.11

Antisense strand
GGCCGAGGCACTGGGCTACCAGGCTGTGGTGCTGAGTGCAGCCATGCAAGGTGATGTAAAAAGTATGGCCCAGTTCTACGGGCTGCTGGCCCATGTGGCTAGAACCCGCCTCACCCCATCCATGGCTGGGGCTTCTGTGGAGGAAGATGCACAGCTCCATGAGCTGGCAGCTGAGCTTCAGATCCCAGACCTGCAGCTGGAGGAGGCTCTGGAGACCATGGCATGGGGAAGGGGCCCAGTCTGCCTGCTGGCTGGTGGCGAGCCCACAGTACAGCTGCAGGGCTCGGGCAGGGGTGGCCGGAACCAGGAACTGGCCCTGCGTGTTGGAGCAGAGTTGAGAAGGTGGCCGCTGGGGCCGATAGATGTGCTGTTTTTGAGCGGTGGCACCGATGGGCAGGATGGGCCCACAGAGGCTGCTGGGGCCTGGGTCACACCTGAGCTTGCCAGCCAGGCTGCAGCTGAGGGCCTGGACATAGCCACCTTCCTAGCCCACAATGACTCACATACCTTCTTCTGCTGCCTCCAGGGTGGGGCACACCTGCTGCACACAGGGATGACAGGTACCAATGTCATGGA
............................................((((.(((((.((.........(((((........))))).((((((.....)))))).....)).)))))((.((((((((....)))...)))))))....)))).........................................................................................................................................................................................................................................................................................................................................................................................................................................
............................................45.................................................................................................................160..............................................................................................................................................................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR343337SRR189787SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)		TAX577746(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR040009(GSM532894)
G727T. (cervix)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189782SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR038857(GSM458540)
D20. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		GSM359196(GSM359196)
m3m7G_ip. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR040008(GSM532893)
G727N. (cervix)		SRR343335DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
......................................................................................................................................................................................................GGAGGAGGCTCTGGAGGGAC...................................................................................................................................................................................................................................................................................................................................................................... 202.000.00--------2.00----------------------------------
.............................................................................................................................................................................................................................................................................................................................................GTTGAGAAGGTGGCCGGG................................................................................................................................................................................................................................. 181.000.00------------1.00------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCTGCTGGGGCCTGGA.................................................................................................................................................... 191.000.00-------------------------1.00-----------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGGTGTGCCCCACC................................ 1811.001.00------------------------------1.00------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTAGCCCACAATGATGT........................................................................... 181.000.00----------------------1.00--------------------
.............................................................................ACGGGCTGCTGGCCCACCAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 201.000.00-----------------------------------1.00-------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCTTCTTCTGCTGCAAAA.................................................... 211.000.00--------------------------------1.00----------
.....................................................................AGCCCGTAGAACTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 1540.250.25------------------0.25------------------------
............ACAGCCTGGTAGCCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 1550.200.20-----------------------------------------0.20-
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGGTGTGCCCC................................ 1580.120.12-------------------0.12-----------------------
.................................................................................................................................................................................................................................................................................CCCGAGCCCTGCAGC................................................................................................................................................................................................................................................................................................ 1580.120.12--------0.12----------------------------------