ID: uc003dcy.1_intron_7_0_chr3_52240768_f.3p
GENE: (8)
chr3:52241899-52242148+


(17)
B-CELL
(1)
BRAIN
(2)
BREAST
(6)
CELL-LINE
(2)
CERVIX
(2)
HELA
(5)
LIVER
(1)
OTHER
(2)
SKIN
(1)
UTERUS

Sense strand
TGGGTGAAAGTGGATTTTCTATTCTGGCTTTTACTAGGCTCTGGGACCCCAGGTAACCTAGAAATTAGAGGAAGTTCATTTTCTTTCCAATATTGAAAATGATACCTTAGAATAGAAGTTTACGTTGTTCTGACTCTAACCAAAACAGAAATTTCTGAAGCGGCAAAAGCTCTTCAGAGCAGTCTCTGGTCTTTCCTCAGGGGCGGTGTGCCCACTGGAAGAGCTGTGTGATGTGGCCCATGAGTTTGGA
..........................................................................................................(((((((((.........))))))))).....................((((((.(((....))))))))).........................................................................
................................................................................................97..............................................................................177.......................................................................
SizePerfect hitTotal NormPerfect NormSRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR189785SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR040018(GSM532903)
G701N. (cervix)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189787SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
GSM359176(GSM359176)
hela_chip_smrna_pure. (hela)
SRR189782SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR015365(GSM380330)
Memory B cells (MM139). (B cell)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
TAX577738(Rovira)
total RNA. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR040035(GSM532920)
G001T. (cervix)
TAX577745(Rovira)
total RNA. (breast)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR343335SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR343334
...........................................................................................................................................................TGAAGCGGCAAAAGCTCA.............................................................................18126.002.005.005.00---5.001.00--1.001.00--2.002.001.00-------------1.00---1.00------1.00----
...........................................................................................................................................................TGAAGCGGCAAAAGCTCAAA...........................................................................20117.002.004.004.004.001.00----4.00------------------------------------
...........................................................................................................................................................TGAAGCGGCAAAAGCTCAA............................................................................19116.002.004.004.002.002.00----------1.00-----1.00-1.00---------1.00------------
............................................................................................................................................................GAAGCGGCAAAAGCTCAA............................................................................189.000.001.001.00-2.00--3.00------------------------1.00-----1.00-------
.............................................................................................................................................................AAGCGGCAAAAGCTCAAA...........................................................................189.000.002.002.00-1.00-----1.00---1.00---1.00----------1.00----------------
...........................................................................................................................................................TGAAGCGGCAAAAGCTCAAAT..........................................................................2115.002.00---1.00------1.003.00---------------------------------
.............................................................................................................................................................AAGCGGCAAAAGCTCAAAT..........................................................................194.000.00--1.00---1.00-----------------1.00----------1.00---------
..............................................................................................................................................................................................................TGTGCCCACTGGAAGAGCT.........................1912.002.00------------2.00--------------------------------
............................................................................................................................................................GAAGCGGCAAAAGCTCAAAA..........................................................................202.000.00--2.00------------------------------------------
............................................................................................................................................................GAAGCGGCAAAAGCTCAAA...........................................................................192.000.00---1.00-----1.00-----------------------------------
...........................................................................................................................................................TGAAGCGGCAAAAGCTC..............................................................................1712.002.00----------2.00----------------------------------
....................................................................................................................................................................................................................CACTGGAAGAGCTGTGTGATGTGGCC............2612.002.00-------1.00--------1.00----------------------------
.....................................................................................................................................................................................................................ACTGGAAGAGCTGTGTGATGTGGCC............2512.002.00----1.00----------------1.00-----------------------
.............................................................................................................................................AAAACAGAAATTTCTGAAGCGG.......................................................................................2212.002.00-------2.00-------------------------------------
.............................................................................................................................................................AAGCGGCAAAAGCTCAA............................................................................171.000.00---1.00-----------------------------------------
.....................................................................................................ATACCTTAGAATAGAAGTTT.................................................................................................................................2011.001.00----1.00----------------------------------------
.................................................................................................................................................................................................................GCCCACTGGAAGAGCTGTGTGATG.................2411.001.00------------1.00--------------------------------
....................................................................................................................................................................................................................CACTGGAAGAGCTGTGTGATGT................2211.001.00----1.00----------------------------------------
......................................................................................................................................................................................................................CTGGAAGAGCTGTGTTCTC.................191.000.00------------------------------------1.00--------
........................................................................................................................................................................................................GGGCGGTGTGCCCACTGTTC..............................201.000.00-------------------1.00-------------------------
............................................................................................................................................................................................................GGTGTGCCCACTGGAAGAGCTTT.......................231.000.00----------------1.00----------------------------
.........................................................................................................................................................................................................................GAAGAGCTGTGTGATGTGGCCC...........2211.001.00--------------------------------------1.00------
............................................................................................................AGAATAGAAGTTTACGTTGTT.........................................................................................................................2111.001.00----1.00----------------------------------------
...........................................................................................................................................................TGAAGCGGCAAAAGCTCAGAT..........................................................................2111.002.00------------------1.00--------------------------
.................................................................................................................................................CAGAAATTTCTGAAGCGGCAAAAG.................................................................................2411.001.00----------------------------------1.00----------
............................................................................CATTTTCTTTCCAATATTGAA.........................................................................................................................................................2111.001.00----1.00----------------------------------------
...............................................................................................................................................................GCGGCAAAAGCTCTTT...........................................................................161.000.00---------------------------------------1.00-----
............................................................................................................................................................GAAGCGGCAAAAGCTCACA...........................................................................191.000.00---------1.00-----------------------------------
......................................................................................................................................................................................TCTCTGGTCTTTCCTGACA.................................................191.000.00-----------------------1.00---------------------
...................TATTCTGGCTTTTACTAGGCTCTGGG.............................................................................................................................................................................................................2611.001.00-------------------------1.00-------------------
...............................................................................................................................................AACAGAAATTTCTGAGTA.........................................................................................181.000.00------------------------------1.00--------------
..........................................................................................................................................................................................................GCGGTGTGCCCACTGGAAGAGC..........................2211.001.00-------1.00-------------------------------------
....................................................................................................................................................................................................................CACTGGAAGAGCTGTGTGATGTGGC.............2511.001.00-------1.00-------------------------------------
....................................................................................................................................................................................................TCAGGGGCGGTGTGCGGGT...................................191.000.00---------------1.00-----------------------------
.....................................................................................................ATACCTTAGAATAGAAGTT..................................................................................................................................1911.001.00----1.00----------------------------------------
............................................................................................................................................................GAAGCGGCAAAAGCTCAAAT..........................................................................201.000.00---------------------------1.00-----------------
.............................................................................................................................................AAAACAGAAATTTCTGAGTAG........................................................................................211.000.00-----------1.00---------------------------------
...........................................................................................................................................................TGAAGCGGCAAAAGC................................................................................1550.200.20-------------------------------------------0.20-
......................................................................................................................................................................................................................CTGGAAGAGCTGTGTG....................1650.200.20------------------------------------------0.20--

Antisense strand
TGGGTGAAAGTGGATTTTCTATTCTGGCTTTTACTAGGCTCTGGGACCCCAGGTAACCTAGAAATTAGAGGAAGTTCATTTTCTTTCCAATATTGAAAATGATACCTTAGAATAGAAGTTTACGTTGTTCTGACTCTAACCAAAACAGAAATTTCTGAAGCGGCAAAAGCTCTTCAGAGCAGTCTCTGGTCTTTCCTCAGGGGCGGTGTGCCCACTGGAAGAGCTGTGTGATGTGGCCCATGAGTTTGGA
..........................................................................................................(((((((((.........))))))))).....................((((((.(((....))))))))).........................................................................
................................................................................................97..............................................................................177.......................................................................
SizePerfect hitTotal NormPerfect NormSRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR189785SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR040018(GSM532903)
G701N. (cervix)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189787SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
GSM359176(GSM359176)
hela_chip_smrna_pure. (hela)
SRR189782SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR015365(GSM380330)
Memory B cells (MM139). (B cell)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
TAX577738(Rovira)
total RNA. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR040035(GSM532920)
G001T. (cervix)
TAX577745(Rovira)
total RNA. (breast)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR343335SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR343334
......................................................................................................................................................................................................................CTGGAAGAGCTGTGTCCGG................. 191.000.00-----------------1.00---------------------------
............................................................................................TTGAAAATGATACCTTACAG.......................................................................................................................................... 201.000.00--------------------------1.00------------------
...........................................................................................................................................................................................................................CACATCACACAGCTCT............... 1690.330.33-----------------------------------------0.22--0.11