ID: uc003dcw.2_intron_0_0_chr3_52110002_r.5p
GENE: (9)
chr3:52156195-52156444-


(7)
BRAIN 		(10)
BREAST 		(10)
CELL-LINE 		(6)
CERVIX 		(1)
HEART 		(1)
LIVER 		(3)
OTHER 		(4)
SKIN 		(3)
UTERUS

Sense strand
CGAAAGTGCCGAGGCCCCCAGCCACACTGGCCAGCTCCATGGGGAATCTGGTAAGTGGCTTGGCAGGCATGTCCTGAGCTCTGTGACTCTGGTGGGCTAGGTCATGGTGAACAGCTCTGGGCTTGGAGACGGTGAGGGAGGAGGTTTAGGCCTGTCTCGGGAAAGGGACCCTAGCAAGATCTTCTCATTTACCAAATACTTTGGAAGTTGTGGTGCTTTGTTTTCCATCTAGAGTGAACGAATAAGACAC
................................................................................(((((((.((((....))))))))))).......((((..((.((....))))...)))).((((....)))).................................................................................................
................................................................................81.......................................................................154..............................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782TAX577580(Rovira)
total RNA. (breast)		SRR029127(GSM416756)
A549. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		TAX577741(Rovira)
total RNA. (breast)		TAX577742(Rovira)
total RNA. (breast)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040028(GSM532913)
G026N. (cervix)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040006(GSM532891)
G601N. (cervix)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577579(Rovira)
total RNA. (breast)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR343334SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040030(GSM532915)
G013N. (cervix)		SRR040010(GSM532895)
G529N. (cervix)		TAX577746(Rovira)
total RNA. (breast)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532883(GSM532883)
G871N. (cervix)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR189783SRR040016(GSM532901)
G645N. (cervix)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577740(Rovira)
total RNA. (breast)		TAX577739(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR029131(GSM416760)
MCF7. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
....................................................................................................................................TGAGGGAGGAGGTTTTAT....................................................................................................1816.000.00--2.003.002.00------1.00------1.00-----1.00--1.001.001.00-----1.00---1.00--1.00--
....................................................................................................................................TGAGGGAGGAGGTTTTGTG...................................................................................................195.000.00-1.00------2.00------------1.00--------1.00--------------
....................................................................................................................................TGAGGGAGGAGGTTTTATA...................................................................................................193.000.001.00--------1.00---------------------------1.00-------
....................................................................................................................................TGAGGGAGGAGGTTTGAT....................................................................................................183.000.00-----1.00--------------1.00-1.00----------------------
...................................................................................................................................GTGAGGGAGGAGGTTGTAT....................................................................................................192.000.00--1.00--------1.00---------------------------------
....................................................................................................................................TGAGGGAGGAGGTTTAATAG..................................................................................................202.000.002.00--------------------------------------------
....................................................................................................................................TGAGGGAGGAGGTTTATAGT..................................................................................................202.000.00-----1.00----------------------------------1.00----
....................................................................................................................................TGAGGGAGGAGGTTTTATT...................................................................................................192.000.001.00-------------------------------1.00------------
....................................................................................................................................TGAGGGAGGAGGTTTTCT....................................................................................................182.000.00------1.00----------------1.00---------------------
....................................................................................................................................TGAGGGAGGAGGTTTGGTT...................................................................................................192.000.00------------1.00-----------------------1.00--------
....................................................................................................................................TGAGGGAGGAGGTTTTGCT...................................................................................................191.000.00--1.00------------------------------------------
.....................................................................................................................................GAGGGAGGAGGTTTATAG...................................................................................................181.000.00------1.00--------------------------------------
....................................................................................................................................TGAGGGAGGAGGTTTTACA...................................................................................................191.000.00----------1.00----------------------------------
...........................................................................................................................................GGAGGTTTAGGCCTGTCGTTG..........................................................................................211.000.00-------1.00-------------------------------------
....................................................................................................................................TGAGGGAGGAGGTTTATTGT..................................................................................................201.000.001.00--------------------------------------------
....................................................................................................................................TGAGGGAGGAGGTTTTATG...................................................................................................191.000.00------------1.00--------------------------------
....................................................................................................................................TGAGGGAGGAGGTTTGA.....................................................................................................171.000.00-1.00-------------------------------------------
....................................................................................................................................TGAGGGAGGAGGTTTCATA...................................................................................................191.000.00----1.00----------------------------------------
.....................................................................................ACTCTGGTGGGCTAGAT....................................................................................................................................................171.000.00-----1.00---------------------------------------
....................................................................................................................................TGAGGGAGGAGGTTTTCTT...................................................................................................191.000.00--------------------------------------1.00------
....................................................................................................................................TGAGGGAGGAGGTTTGTT....................................................................................................181.000.00-------------------1.00-------------------------
............................................................TGGCAGGCATGTCCTCAT............................................................................................................................................................................181.000.00--------------1.00------------------------------
....................................................................................................................................TGAGGGAGGAGGTTTAATAT..................................................................................................201.000.001.00--------------------------------------------
....................................................................................................................................TGAGGGAGGAGGTTTTGTA...................................................................................................191.000.00-1.00-------------------------------------------
...................................................................................................................TCTGGGCTTGGAGACGGTGAGGGAGGAGGTTT.......................................................................................................3211.001.00----------------------------------1.00----------
...................................TCCATGGGGAATCTGGCG.....................................................................................................................................................................................................181.000.00-------------1.00-------------------------------
....................................................................................................................................TGAGGGAGGAGGTTTAGAGTT.................................................................................................211.000.00-1.00-------------------------------------------
....................................................................................................................................TGAGGGAGGAGGTTTAAAAG..................................................................................................201.000.00-------------------------------1.00-------------
....................................................................................................................................TGAGGGAGGAGGTTTGCTA...................................................................................................191.000.00-------1.00-------------------------------------
...................................................................................................................................................................AGGGACCCTAGCAAGCAG.....................................................................181.000.00---------------------------------1.00-----------
....................................................................................................................................TGAGGGAGGAGGTTTTGGT...................................................................................................191.000.00-----------------1.00---------------------------
....................................................................................................................................TGAGGGAGGAGGTTTTGT....................................................................................................181.000.00----------1.00----------------------------------
....................................................................................................................................TGAGGGAGGAGGTTTACAG...................................................................................................191.000.00--------------------------1.00------------------
..............................................................GCAGGCATGTCCTGAGCTCTGTGA....................................................................................................................................................................2411.001.00----------------1.00----------------------------
...................................................................................................................................GTGAGGGAGGAGGTTGTG.....................................................................................................181.000.00-1.00-------------------------------------------
....................................................................................................................................TGAGGGAGGAGGTTTTAGA...................................................................................................191.000.001.00--------------------------------------------
....................................................................................................................................TGAGGGAGGAGGTTTCAGA...................................................................................................191.000.00---------1.00-----------------------------------
.........................................................................................................GGTGAACAGCTCTGG..................................................................................................................................1580.120.12--------------------------------------------0.12

Antisense strand
CGAAAGTGCCGAGGCCCCCAGCCACACTGGCCAGCTCCATGGGGAATCTGGTAAGTGGCTTGGCAGGCATGTCCTGAGCTCTGTGACTCTGGTGGGCTAGGTCATGGTGAACAGCTCTGGGCTTGGAGACGGTGAGGGAGGAGGTTTAGGCCTGTCTCGGGAAAGGGACCCTAGCAAGATCTTCTCATTTACCAAATACTTTGGAAGTTGTGGTGCTTTGTTTTCCATCTAGAGTGAACGAATAAGACAC
................................................................................(((((((.((((....))))))))))).......((((..((.((....))))...)))).((((....)))).................................................................................................
................................................................................81.......................................................................154..............................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782TAX577580(Rovira)
total RNA. (breast)		SRR029127(GSM416756)
A549. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		TAX577741(Rovira)
total RNA. (breast)		TAX577742(Rovira)
total RNA. (breast)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040028(GSM532913)
G026N. (cervix)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040006(GSM532891)
G601N. (cervix)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577579(Rovira)
total RNA. (breast)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR343334SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040030(GSM532915)
G013N. (cervix)		SRR040010(GSM532895)
G529N. (cervix)		TAX577746(Rovira)
total RNA. (breast)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532883(GSM532883)
G871N. (cervix)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR189783SRR040016(GSM532901)
G645N. (cervix)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577740(Rovira)
total RNA. (breast)		TAX577739(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		TAX577589(Rovira)
total RNA. (breast)		SRR029131(GSM416760)
MCF7. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
.............GCCCCCAGCCACACTAGT........................................................................................................................................................................................................................... 181.000.00-----------------------------------------1.00---
...............................................................................................................................................................................................................TTGTGGTGCTTTGTTTTGCA....................... 201.000.00-------------------------1.00-------------------
....................................................................................GACTCTGGTGGGCTAGCCA................................................................................................................................................... 191.000.00---------------1.00-----------------------------
..............................................................................................................................CCTCCCTCACCGTCT............................................................................................................. 1560.170.17-------------------------------------------0.17-