ID: uc003dby.2_intron_9_0_chr3_51981912_f
GENE: (10)
chr3:51981862-51982376+


(1)
B-CELL
(3)
BRAIN
(9)
BREAST
(11)
CELL-LINE
(3)
CERVIX
(3)
LIVER
(2)
OTHER
(1)
RRP40.ip
(8)
SKIN
(1)
TESTES

Sense strand
CCCACCTCCTGGCTTCGACAGTGTCATTGCCCGAGGCCACACCGAGCCTGGTGAGTCCTCAGAAGCTGTACAGCCCAAGGAGAGAGGTGGGGCCGAGATAGGGGCTGGGACATTTTCAGGGAGGGGGCTGTGAAGAGGGACAAAAAGAAGCTTCCCTGTCGTCACTCAGTTTGTCATTTGACAAACATCCACTGGTTCAACACATCATTCCTGGGCATCCCGGAGGGCTTCAAAAAGAGGAGTTGTTGACTGAGCATTGAAGGATTAGTACAAGTTTCCCAGAGAGAAGTCGGGGAGGACACCCCAGGCAGAAGCCCCAGCCCCTGCAGTGGTTTGGAGGTGGGCAAGGTGGAAATGAGCAGGCGTGCCCTGTGACAGACATGGAGAGCATAGGGGGCAGGACTTACTCGTAAGGCCTGGGACCAGTGACCCCTGGGCCACCCTGGCCCTTGCTGTGCCCTGCAGATCCGACCCAGGACACTGAGTTGGAGCTGGATGGCCAGCAAGTGGTGGTG
...................................................................................................................................((..(((((............))))).))....(((.(((((((....)))))))..........((((((.....((((.(((...)))))))..((((.....))))...))))))..))).....................................................................................................................................................................................................................................................................
...................................................................................................................................132.......................................................................................................................254...................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
TAX577742(Rovira)
total RNA. (breast)
TAX577580(Rovira)
total RNA. (breast)
SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
TAX577741(Rovira)
total RNA. (breast)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR040018(GSM532903)
G701N. (cervix)
SRR037936(GSM510474)
293cand1. (cell line)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR189783SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR040036(GSM532921)
G243N. (cervix)
TAX577740(Rovira)
total RNA. (breast)
SRR189785SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
TAX577739(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577590(Rovira)
total RNA. (breast)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR060168(GSM565978)
5-8F_nucleus. (cell line)
TAX577589(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
TAX577738(Rovira)
total RNA. (breast)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR040038(GSM532923)
G531N. (cervix)
........................................................................................................................................GGGACAAAAAGAAGCATC.........................................................................................................................................................................................................................................................................................................................................................................1833.000.0033.00---------------------------------------------
.......................................................................................................................................................................................................................................AAAAAGAGGAGTTGTTTTT.........................................................................................................................................................................................................................................................................194.000.00-------2.00---1.00----1.00-----------------------------
........................................................................................................................................GGGACAAAAAGAAGCTTC.........................................................................................................................................................................................................................................................................................................................................................................1823.503.503.50---------------------------------------------
.........................................................................................................................................GGACAAAAAGAAGCTAAC........................................................................................................................................................................................................................................................................................................................................................................182.000.00--------------1.00----------------------1.00--------
...................................................................................................................TCAGGGAGGGGGCTGTGTGGT...........................................................................................................................................................................................................................................................................................................................................................................................212.000.00--1.00-----1.00-------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGTTGGAGCTGGATGGC...............2011.001.00-----------1.00----------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................GACAGACATGGAGAGATTA...........................................................................................................................191.000.00---------------------------------------1.00------
...................................................................................................................TCAGGGAGGGGGCTGTGTTG............................................................................................................................................................................................................................................................................................................................................................................................201.000.00--1.00-------------------------------------------
...................................................................................................................TCAGGGAGGGGGCTGAACT.............................................................................................................................................................................................................................................................................................................................................................................................191.000.00-----1.00----------------------------------------
...................................................................................................................TCAGGGAGGGGGCTGTATAG............................................................................................................................................................................................................................................................................................................................................................................................201.000.00------1.00---------------------------------------
........................................................................................................................................................................................................................................AAAAGAGGAGTTGTTTTG.........................................................................................................................................................................................................................................................................181.000.00--------------------1.00-------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACACTGAGTTGGAGCTGGATGGCCAG............2911.001.00-1.00--------------------------------------------
................................................................................................................................................................................................................................................................TTGAAGGATTAGTACAATTTG..............................................................................................................................................................................................................................................211.000.00---------------------1.00------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCCTGCAGATCCGAATTA........................................201.000.00------------1.00---------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTTGGAGCTGGATGGCC..............2011.001.00----------------------------------1.00-----------
...................................................................................................................TCAGGGAGGGGGCTGTGGAGG...........................................................................................................................................................................................................................................................................................................................................................................................211.000.00---1.00------------------------------------------
.......................................................................................................................................................................................................................................AAAAAGAGGAGTTGTTTTTT........................................................................................................................................................................................................................................................................201.000.00-------------1.00--------------------------------
.............................................................................................................................................................................................................................................................................................................................................TTGGAGGTGGGCAAGGTGATCC................................................................................................................................................................221.000.00-----------------1.00----------------------------
...........................................................................................................................................................................................................................................................................GTACAAGTTTCCCAGGAAT.....................................................................................................................................................................................................................................191.000.00---------------------------------1.00------------
...............................................................AGCTGTACAGCCCAAGGCTA................................................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00----1.00-----------------------------------------
....................................................................................................................................................................................................................................................................................................................................................TGGGCAAGGTGGAAATGAGCAGGCGTGC...................................................................................................................................................2811.001.00------------------1.00---------------------------
..........................................................................................................................................................................................................................................AAGAGGAGTTGTTGAGGA.......................................................................................................................................................................................................................................................................181.000.00----------------------------------------1.00-----
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGACACTGAGTTGGAGCTGGATGGC...............2711.001.00-1.00--------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACACTGAGTTGGAGCTGGATGG................2411.001.00-1.00--------------------------------------------
...................................................................................................................TCAGGGAGGGGGCTGTATGA............................................................................................................................................................................................................................................................................................................................................................................................201.000.00--------1.00-------------------------------------
...................................................................................................................TCAGGGAGGGGGCTGTGTG.............................................................................................................................................................................................................................................................................................................................................................................................191.000.00-------------------1.00--------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGAGCTGGATGGC...............1711.001.00-----1.00----------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCCTGCAGATCCGAATT.........................................191.000.00----1.00-----------------------------------------
............................................................................AAGGAGAGAGGTGGGGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00-----------------------------1.00----------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCCTGCAGATCCGAATTG........................................201.000.00------1.00---------------------------------------
..............................................................................................................................................................................................................................................................................................................CCCAGGCAGAAGCCCCAGTGAC...............................................................................................................................................................................................221.000.00----------1.00-----------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGCAGATCCGAATTT........................................191.000.00----------------------1.00-----------------------
...................................................................................................................TCAGGGAGGGGGCTGTTAAA............................................................................................................................................................................................................................................................................................................................................................................................201.000.00--1.00-------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCCTGCAGATCCGAATTT........................................201.000.00----------------------------1.00-----------------
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGACACTGAGTTGGAGCTGGATGGCCAGC...........3111.001.00----------1.00-----------------------------------
...................................................................................................................TCAGGGAGGGGGCTGTGTTAT...........................................................................................................................................................................................................................................................................................................................................................................................211.000.00--------------------------1.00-------------------
...................................................................................................................TCAGGGAGGGGGCTGTGTGC............................................................................................................................................................................................................................................................................................................................................................................................201.000.00---1.00------------------------------------------
........................................................................................................................GAGGGGGCTGTGAAGAGGGA.......................................................................................................................................................................................................................................................................................................................................................................................2011.001.00--------------------------------1.00-------------
.......................................CACCGAGCCTGGTGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1540.750.75-------------------------0.25----------------0.250.25--
.......................................CACCGAGCCTGGTGATAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1940.500.75-------------------------0.25-------------------0.25
.......................................CACCGAGCCTGGTGATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1840.250.75-------------------------0.25--------------------
........................................................................................................CTGGGACATTTTCAGG...........................................................................................................................................................................................................................................................................................................................................................................................................1640.250.25--------------------------------------------0.25-
.......................................CACCGAGCCTGGTGATAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1940.250.75-------------------------0.25--------------------

Antisense strand
CCCACCTCCTGGCTTCGACAGTGTCATTGCCCGAGGCCACACCGAGCCTGGTGAGTCCTCAGAAGCTGTACAGCCCAAGGAGAGAGGTGGGGCCGAGATAGGGGCTGGGACATTTTCAGGGAGGGGGCTGTGAAGAGGGACAAAAAGAAGCTTCCCTGTCGTCACTCAGTTTGTCATTTGACAAACATCCACTGGTTCAACACATCATTCCTGGGCATCCCGGAGGGCTTCAAAAAGAGGAGTTGTTGACTGAGCATTGAAGGATTAGTACAAGTTTCCCAGAGAGAAGTCGGGGAGGACACCCCAGGCAGAAGCCCCAGCCCCTGCAGTGGTTTGGAGGTGGGCAAGGTGGAAATGAGCAGGCGTGCCCTGTGACAGACATGGAGAGCATAGGGGGCAGGACTTACTCGTAAGGCCTGGGACCAGTGACCCCTGGGCCACCCTGGCCCTTGCTGTGCCCTGCAGATCCGACCCAGGACACTGAGTTGGAGCTGGATGGCCAGCAAGTGGTGGTG
...................................................................................................................................((..(((((............))))).))....(((.(((((((....)))))))..........((((((.....((((.(((...)))))))..((((.....))))...))))))..))).....................................................................................................................................................................................................................................................................
...................................................................................................................................132.......................................................................................................................254...................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
TAX577742(Rovira)
total RNA. (breast)
TAX577580(Rovira)
total RNA. (breast)
SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
TAX577741(Rovira)
total RNA. (breast)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR040018(GSM532903)
G701N. (cervix)
SRR037936(GSM510474)
293cand1. (cell line)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR189783SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR040036(GSM532921)
G243N. (cervix)
TAX577740(Rovira)
total RNA. (breast)
SRR189785SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
TAX577739(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577590(Rovira)
total RNA. (breast)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR060168(GSM565978)
5-8F_nucleus. (cell line)
TAX577589(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
TAX577738(Rovira)
total RNA. (breast)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR040038(GSM532923)
G531N. (cervix)
...............................................................................................................................................................................................CTGGTTCAACACATCAAAGT................................................................................................................................................................................................................................................................................................................ 202.000.00---------2.00------------------------------------
.............................................................................................................................................................................................CACTGGTTCAACACACGGA................................................................................................................................................................................................................................................................................................................... 191.000.00---------------------------1.00------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGGCCACCCTGGCCGCG................................................................ 191.000.00--------------------------------------1.00-------
................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGGCCACCCTGGCCGGG................................................................ 191.000.00-----------------------1.00----------------------
......................................................................................................................................................................................................................................................................................................................GAAGCCCCAGCCCCTAAGC.......................................................................................................................................................................................... 191.000.00-----------------------------------------1.00----
.......CCTGGCTTCGACAGTGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 181.000.00---------------1.00------------------------------
..................................................................................AGAGGTGGGGCCGAGATTGC............................................................................................................................................................................................................................................................................................................................................................................................................................. 201.000.00-------------------------------1.00--------------
...................................................................................GAGGTGGGGCCGAGACATG............................................................................................................................................................................................................................................................................................................................................................................................................................. 191.000.00------------------------1.00---------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGGCCACCCTGGCCTCG................................................................ 191.000.00------------------------------------1.00---------
........................................................................................................................................................................................................................................................ACTGAGCATTGAAGGTGG......................................................................................................................................................................................................................................................... 181.000.00------------------------------1.00---------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGCAGATCCGACCCAAGTA.................................... 211.000.00-----------------------------------1.00----------