ID: uc003dbe.1_intron_6_0_chr3_51451498_r.3p
GENE: (18)
chr3:51451448-51451697-


(1)
AGO2.ip 		(1)
B-CELL 		(3)
BREAST 		(16)
CELL-LINE 		(1)
CERVIX 		(2)
FIBROBLAST 		(4)
HEART 		(3)
HELA 		(3)
LIVER 		(3)
OTHER 		(1)
RRP40.ip 		(13)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
TATATGAGGATACCCTAGGATATTTTCAGAGACATCATTCAATAATATGCATTCTACATGTATTTGTTTTACCTTGATCTCATTGACTTTTAAAGTATCAATACCTGGCAGGAGGAAAAAAAGTGATATTTTAGAATTTCCTCCCATGAGATTAGATAAGTTTTGTGTAAAATAGTTTTCCTTGACCATTCCCCTCCTAGTGGGACCTTCGAACTTTTCATCTTTTGCATACTGTTCCCGCTCTGGATCA
........................................................................................................((((.(((.((((...(((.(((((((((...........((..(((((.....)))))..)))))))))....))))).....))))))).))))..................................................
....................................................................................................101................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037937(GSM510475)
293cand2. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189784SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040040(GSM532925)
G612N. (cervix)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037935(GSM510473)
293cand3. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR029129(GSM416758)
SW480. (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR189782GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR191541(GSM715651)
63genomic small RNA (size selected RNA from t. (breast)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		SRR343335SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
.................................................................................................................................................................................TTCCTTGACCATTCCCCTCCTAGA.................................................24118.009.008.001.00-----1.001.00--2.00------1.00------1.00------1.00---1.00-------1.00-----
................................................................................................................................................................................TTTCCTTGACCATTCCCCTCCTAG..................................................24111.0011.00------1.001.00--2.00----------1.00-1.00------1.001.00---1.00----------1.001.00--
.................................................................................................................................................................................TTCCTTGACCATTCCCCTCCTAG..................................................2319.009.00-2.00----1.00-1.00-----1.00-1.00-------1.00--1.00-------------1.00--------
............................................................................................................................................CTCCCATGAGATTAGATAAGTTTTGTGTAAAATAGTTTTCCTTGACCATTCCCCTC......................................................5617.007.00--6.00----------------------------------------1.00------
.................................................................................................................................................................................TTCCTTGACCATTCCCCTCCTAGAA................................................2516.009.002.002.00---------------------------1.00---------------1.00----
................................................................................................................................................................................TTTCCTTGACCATTCCCCTCCTAGA.................................................2514.0011.001.00--------2.00---------1.00------------------------------
.............................................................................................................................................................................................................................CTTTTGCATACTGTTCCCGCT........2112.002.00---2.00----------------------------------------------
............................................................................................................................................................................................................................TCTTTTGCATACTGTTCCCGCTC.......2312.002.00----2.00---------------------------------------------
......................................................................................................................................................................................................................TTTTCATCTTTTGCATACTGTTCCC...........2512.002.00---2.00----------------------------------------------
.......................................................................................................................................................TTAGATAAGTTTTGTGTAAA...............................................................................2012.002.00------------2.00-------------------------------------
.................................................................................................................................................................................TTCCTTGACCATTCCCCTCCTATA.................................................2411.001.00------------------------------------------1.00-------
................................................................................................................................................................................................................................TTGCATACTGTTCCCGCTCT......2011.001.00---------------------------------------1.00----------
.................................................................................................................................................................................TTCCTTGACCATTCCCCTCCTA...................................................2211.001.00--------------------------1.00-----------------------
................................................................................................................................................................................................................................TTGCATACTGTTCCCGCT........1811.001.00-----1.00--------------------------------------------
...........................................................................................................................................................................ATAGTTTTCCTTGACCATTCCCCTCCTCG..................................................291.000.00--------------------1.00-----------------------------
........................................................................................................................................................................................................TGGGACCTTCGAACTT..................................1611.001.00-------------------------------------1.00------------
.........................................................................................................TGGCAGGAGGAAAAAGGTG..............................................................................................................................191.000.00---------------1.00----------------------------------
...................................................................................................................................................................................................................................CATACTGTTCCCGCTCTG.....1811.001.00----------------------1.00---------------------------
...............................................................................................................................................................................................................................TTTGCATACTGTTCCCGCTC.......2011.001.00----1.00---------------------------------------------
...........................................................................................................................................................................................................................ATCTTTTGCATACTGTTCCCGCT........2311.001.00-----1.00--------------------------------------------
...............................................................................................................................................................................................................TTCGAACTTTTCATCTTTTGCATACTG................2711.001.00---------------------------------1.00----------------
................................................................................................................................................................................................................TCGAACTTTTCATCTCTAC.......................191.000.00------------------------------------------------1.00-
.................................................................................................................................................................................TTCCTTGACCATTCCCCTCA.....................................................201.000.00-1.00------------------------------------------------
.................................................................................................................................................................................TTCCTTGACCATTCCCCTCCTAGT.................................................2411.001.00----------------------------------------1.00---------
..........................................................................................................................................................................................................................................TTCCCGCTCTGGATC.1521.001.00--------------------------------------1.00-----------
..............................................................................................................................................................................................................................TTTTGCATACTGTTCCCGCTC.......2111.001.00-----1.00--------------------------------------------
...........................................................................................................................................................................................................................ATCTTTTGCATACTGTTCCCGCTCTGG....2711.001.00-------------1.00------------------------------------
.........................................................................................................................................................................................................................TCATCTTTTGCATACTGTTCCCGC.........2411.001.00---1.00----------------------------------------------
.............................................................................................................................................................................................................................CTTTTGCATACTGTTCCCG..........1911.001.00----------------------------------1.00---------------
...............................................................................................................................................................................................................................TTTGCATACTGTTCCCGCT........1911.001.00---1.00----------------------------------------------
............................................................................................................................................................................................................ACCTTCGAACTTTTCA..............................1620.500.50-------------------------------------------------0.50

Antisense strand
TATATGAGGATACCCTAGGATATTTTCAGAGACATCATTCAATAATATGCATTCTACATGTATTTGTTTTACCTTGATCTCATTGACTTTTAAAGTATCAATACCTGGCAGGAGGAAAAAAAGTGATATTTTAGAATTTCCTCCCATGAGATTAGATAAGTTTTGTGTAAAATAGTTTTCCTTGACCATTCCCCTCCTAGTGGGACCTTCGAACTTTTCATCTTTTGCATACTGTTCCCGCTCTGGATCA
........................................................................................................((((.(((.((((...(((.(((((((((...........((..(((((.....)))))..)))))))))....))))).....))))))).))))..................................................
....................................................................................................101................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037937(GSM510475)
293cand2. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189784SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040040(GSM532925)
G612N. (cervix)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037935(GSM510473)
293cand3. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR029129(GSM416758)
SW480. (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR189782GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR191541(GSM715651)
63genomic small RNA (size selected RNA from t. (breast)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		SRR343335SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
........................................................................CTTGATCTCATTGACAGC................................................................................................................................................................ 181.000.00-----------------1.00--------------------------------
.......................................................ACATGTATTTGTTTTTCAC................................................................................................................................................................................ 191.000.00----------------------------1.00---------------------