ID: uc003cyk.2_intron_0_0_chr3_50196722_f
GENE: (1)
chr3:50196672-50197057+


(8)
B-CELL
(1)
BRAIN
(1)
BREAST
(9)
CELL-LINE
(1)
CERVIX
(1)
FIBROBLAST
(7)
HEART
(2)
HELA
(1)
LIVER
(7)
OTHER
(20)
SKIN
(1)
XRN.ip

Sense strand
GAGAAAGGAGAAAGCATGCTGGGAGCTGGAAAGAGCCCTAAGATCACCTGGTTGGTCTGGGCCCTGTGAATGGAATTCAGCATGCCATGAGGGGTAGGGTTTGAGTCTCCAGCAGCCCCCATCAGTTCTGGTGACCCCAGGCTGGGGCCTATTGGTACTATCTCCCCAGACAAAGGCAGGCCAAAGAACGCACATGAGGTGTGCACACAGGGGCATTCATGGCCCCAGGCTGGGGGTGGAAGCGTGGAGGTACCCATCAACCTCTTTGTTCACCTTGGGTAGAAATTGAACTCCCCCATCTGCCTCACACATTCCAATCTTGGTTCCCCTTCCCAGGTTTCTAGAGAGTGGAGCCTGCTTCCTGGGCCCTAGGCCCCTCCCACAAT
....................................................................................................................................................................................................................................................................................(((((((...((........)))))))))........(((....)))...............................................................
.................................................................................................................................................................................................................................................................................274...........................................................336................................................
SizePerfect hitTotal NormPerfect NormSRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR189785SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR343337SRR189782SRR015365(GSM380330)
Memory B cells (MM139). (B cell)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR189784SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532884(GSM532884)
G871T. (cervix)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577743(Rovira)
total RNA. (breast)
GSM359177(GSM359177)
hela_nucl_a. (hela)
SRR343336SRR343334SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR343335SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
......................................................................................................................................................................................................................................................................................GTAGAAATTGAACTCTG...........................................................................................17126.000.0058.00-15.006.005.005.004.004.003.00-3.003.003.00-3.002.00-2.001.002.00---1.001.00-----1.00--1.00----1.00-----1.001.00------------
...................................................................................................................................................................................................................................GGCTGGGGGTGGAAGCG..............................................................................................................................................17122.0022.00-15.00-----------2.00--------1.00-----1.00--------------1.00--1.001.00----------
..................................................................................................................................................................................................................................AGGCTGGGGGTGGAAGCG..............................................................................................................................................1815.005.00-1.00-----------1.00------2.00-------------1.00-----------------------
.....................................................................................................................................................................................................................................................................................GGTAGAAATTGAACTCTG...........................................................................................183.000.002.00--------------1.00------------------------------------------
...................................................................................................................................................................................................................................................................................TGGGTAGAAATTGAACTCTG...........................................................................................202.000.00--1.00-------------------------------------1.00-----------------
....................................................................................................................................................................................................................................................................................GGGTAGAAATTGAACTCTG...........................................................................................192.000.001.00----------------------------------------1.00----------------
.........................................................................................................................................................................................................................................................................................................................................................................CTGGGCCCTAGGCCCCTCCCACAA.2412.002.00-------------------------------1.001.00-------------------------
................................................................................................................................................................................................................................................AGCGTGGAGGTACCCGAA................................................................................................................................181.000.00---------1.00------------------------------------------------
...................................................................................................................................................................................................................................GGCTGGGGGTGGAAGCGT.............................................................................................................................................1811.001.00-----------------------------------1.00----------------------
................................................................................................................................................................................................................................................AGCGTGGAGGTACCCCAA................................................................................................................................181.000.00---------1.00------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................AGTGGAGCCTGCTTCTT.......................171.000.00------------------------------------1.00---------------------
...................................................................................................................................................................................................................................................................................................TCCCCCATCTGCCTCGCCA............................................................................191.000.00--------------------------------------------------1.00-------
......................................................................................................................................................................................................................................................................................................................................................................TTCCTGGGCCCTAGGCCCCTCCCACA..2611.001.00---------------------------------------------------1.00------
.........................................................................................................................................................................................................................................................................................................................................................GAGTGGAGCCTGCTTCTTA......................191.000.00----------------1.00-----------------------------------------
......................................................................................................................................................................................................................................................................................................................................................AGAGAGTGGAGCCTGCTTCCTGG.....................2311.001.00-----------------------------1.00----------------------------
.....................................................................................................................................................................................................................................................................................GGTAGAAATTGAACTCGG...........................................................................................181.000.00------1.00---------------------------------------------------
................................................................................................................................................................................................................................................AGCGTGGAGGTACCCAAA................................................................................................................................181.000.00------------------------------------------1.00---------------
..........................................................................................................................................................................................................................................................................................................................................................AGTGGAGCCTGCTTCTTA......................181.000.00----------------1.00-----------------------------------------
........................................................................................................................................................................................................................................................................................................................................................AGAGTGGAGCCTGCTTCC........................1811.001.001.00---------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................CAATCTTGGTTCCCCTTCCC....................................................2011.001.00-------------------------------------1.00--------------------
....................................................................................................................................................................................CCAAAGAACGCACATTTTG...........................................................................................................................................................................................191.000.00---------------------1.00------------------------------------
................................................................................................................................................................................................................................................AGCGTGGAGGTACCCATA................................................................................................................................181.000.00---------1.00------------------------------------------------
.....................................................................................................................................................................................................................................CTGGGGGTGGAAGCG..............................................................................................................................................1560.670.67---------------------0.17------------------------------0.170.33----
....................................................................................................................................................................................................................................GCTGGGGGTGGAAGCGAAG...........................................................................................................................................1930.670.67------------------------------------------------------0.330.33--
....................................................................................................................................................................................................................................GCTGGGGGTGGAAGCG..............................................................................................................................................1630.670.67----------------------------------------------------0.33---0.33-
....................................................................................................................................................................................................................................GCTGGGGGTGGAAGCGCAG...........................................................................................................................................1930.330.67----------------0.33-----------------------------------------
....................................................................................................................................................................................................................................GCTGGGGGTGGAAGCGC.............................................................................................................................................1730.330.67----------------------------------------------------0.33-----
.................................................................................................................................................................................................................................................................................CTTGGGTAGAAATTG..................................................................................................1590.220.22---------------------------------------------------------0.22
.....................................................................................................................................................................................................................................CTGGGGGTGGAAGCGGAGT..........................................................................................................................................1960.170.67----------------------0.17-----------------------------------

Antisense strand
GAGAAAGGAGAAAGCATGCTGGGAGCTGGAAAGAGCCCTAAGATCACCTGGTTGGTCTGGGCCCTGTGAATGGAATTCAGCATGCCATGAGGGGTAGGGTTTGAGTCTCCAGCAGCCCCCATCAGTTCTGGTGACCCCAGGCTGGGGCCTATTGGTACTATCTCCCCAGACAAAGGCAGGCCAAAGAACGCACATGAGGTGTGCACACAGGGGCATTCATGGCCCCAGGCTGGGGGTGGAAGCGTGGAGGTACCCATCAACCTCTTTGTTCACCTTGGGTAGAAATTGAACTCCCCCATCTGCCTCACACATTCCAATCTTGGTTCCCCTTCCCAGGTTTCTAGAGAGTGGAGCCTGCTTCCTGGGCCCTAGGCCCCTCCCACAAT
....................................................................................................................................................................................................................................................................................(((((((...((........)))))))))........(((....)))...............................................................
.................................................................................................................................................................................................................................................................................274...........................................................336................................................
SizePerfect hitTotal NormPerfect NormSRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR189785SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR343337SRR189782SRR015365(GSM380330)
Memory B cells (MM139). (B cell)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR189784SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532884(GSM532884)
G871T. (cervix)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577743(Rovira)
total RNA. (breast)
GSM359177(GSM359177)
hela_nucl_a. (hela)
SRR343336SRR343334SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR343335SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
..........................................................................................GGGGTAGGGTTTGAGTGTG..................................................................................................................................................................................................................................................................................... 191.000.00--------------------------1.00-------------------------------
.................................................................................................................................................................................................................................................................CAACCTCTTTGTTCATTTT.............................................................................................................. 191.000.00-------------------------------------------------1.00--------
.............................................CACAGGGCCCAGACCAACCAGGT.............................................................................................................................................................................................................................................................................................................................. 2311.001.00------------------1.00---------------------------------------
............................................................................................................................................................................................................ACACAGGGGCATTCATGG.................................................................................................................................................................... 181.000.00---------------------------1.00------------------------------
...........................................................................................................................................................................................................................................................ACCCATCAACCTCTTTTGG.................................................................................................................... 191.000.00------------------------------------------------1.00---------
..........................................................................................................................................................................................................................................................................................................AGATTGGAATGTGTGAGGCAGA.................................................................. 2211.001.00-------------------------1.00--------------------------------