ID: uc003cxh.2_intron_29_0_chr3_49751431_f
GENE: (30)
chr3:49751381-49751572+


(2)
AGO2.ip
(2)
B-CELL
(2)
BRAIN
(4)
BREAST
(16)
CELL-LINE
(2)
CERVIX
(2)
HEART
(3)
HELA
(1)
KIDNEY
(6)
LIVER
(2)
OTHER
(13)
SKIN
(1)
UTERUS
(1)
XRN.ip

Sense strand
AGCAGCGGCCCTGGGCCCAGACCAACTGGATCCTGGTGCGGCTCTGGAGGGTAAGCCTGACTCGAGGGGAAGTGGCTGAGGCTGGCTGGAGGGAGAGGGTGCGCTGTCCCATTGACCTGGGCACTGACCCCCACCTCCACAGGGCTGTGGCTTCGGGTACCGCTATACACGGCTGCCACATCTGCTGAAAAC
.................................................................................(((..((((((....((((.((.((.((((......)))))).))))))...)))))))))..................................................
................................................................................81...........................................................142................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR189785SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
TAX577580(Rovira)
total RNA. (breast)
SRR189783DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR191506(GSM715616)
146genomic small RNA (size selected RNA from . (breast)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR040037(GSM532922)
G243T. (cervix)
SRR189787SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
GSM339995(GSM339995)
hues6NP. (cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR040036(GSM532921)
G243N. (cervix)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR038861(GSM458544)
MM466. (cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)
TAX577579(Rovira)
total RNA. (breast)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
GSM541797(GSM541797)
differentiated human embryonic stem cells. (cell line)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR553575(SRX182781)
source: Kidney. (Kidney)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029131(GSM416760)
MCF7. (cell line)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
.........................................................................................................................CACTGACCCCCACCTCCACAG..................................................21116.0016.002.001.007.00------1.00---------------1.00---1.00-------1.00------1.00-----1.00--------
.........................................................................................................................CACTGACCCCCACCTCCACAGT.................................................22111.0016.00-5.00----------1.00--1.00-----1.00------------1.00---1.00------------1.00-------
.........................................................................................................................CACTGACCCCCACCTCCACAGA.................................................2217.0016.001.003.00----------------1.00--------1.00-----1.00-------------------------
.........................................................................................................................CACTGACCCCCACCTCCACA...................................................2016.006.003.00---------------1.00-----1.00-----------------------------1.00------
........................................................................................................................GCACTGACCCCCACCTCCACAGT.................................................235.000.00------3.002.00---------------------------------------------------
........................................................................................................................GCACTGACCCCCACCTCCACA...................................................2113.003.001.00----------2.00-----------------------------------------------
.................................TGGTGCGGCTCTGGAGG..............................................................................................................................................1713.003.00----------2.00--------1.00---------------------------------------
................................CTGGTGCGGCTCTGGAGG..............................................................................................................................................1813.003.00--1.00--2.00-----------------------------------------------------
.......................AACTGGATCCTGGTGCGGCT.....................................................................................................................................................2013.003.00---3.00-------------------------------------------------------
..................................................GTAAGCCTGACTCGAGGGGAAGTGGCTGAGGCTGGCTGGAGGGAGAGGGTGCGCTGTCCCATTGACCTGGGCACTGACCCCCACCTCCACAG..................................................9212.002.00-----------------------------------------1.00-------1.00---------
.....................................................................................CTGGAGGGAGAGGGTGCGCTGTCT...................................................................................242.000.00--------------------1.00-------------------------1.00------------
.....................................................................................CTGGAGGGAGAGGGTGCGCTGT.....................................................................................2212.002.00--------------------------1.00-----1.00--------------------------
.............................................................................GAGGCTGGCTGGAGGGATCG...............................................................................................201.000.00----1.00------------------------------------------------------
.........................................................................................................................CACTGACCCCCACCTCCACAGAA................................................2311.0016.00----------------------------------------1.00------------------
.....................................................................................CTGGAGGGAGAGGGTGCGCTGTTT...................................................................................2411.002.00--------------1.00--------------------------------------------
........................................................................................................................................CCACAGGGCTGTGGCTTCGGGTAC................................2411.001.00-----------------------------------1.00-----------------------
...........................................................................CTGAGGCTGGCTGGAGGTATA................................................................................................211.000.00----1.00------------------------------------------------------
....................................................................................GCTGGAGGGAGAGGGTGCGCTGT.....................................................................................2311.001.001.00----------------------------------------------------------
.............................................................................GAGGCTGGCTGGAGGTA..................................................................................................171.000.00---------1.00-------------------------------------------------
..........................................................................................................................ACTGACCCCCACCTCCACAG..................................................2021.001.000.50---------------------------0.50------------------------------
........................................................................................................................GCACTGACCCCCACCTCCACAGC.................................................231.000.00-------1.00---------------------------------------------------
.......................................................CCTGACTCGAGGGGAAGTGG.....................................................................................................................2011.001.00---------------------------------------------1.00-------------
..........................................................................................................................ACTGACCCCCACCTCCACTGT.................................................211.000.00-----------------------------------------------1.00-----------
...........................................................................................GGAGAGGGTGCGCTGTAGC..................................................................................191.000.00------------------------------1.00----------------------------
........................................................................................................................GCACTGACCCCCACCTCCACAC..................................................2211.003.001.00----------------------------------------------------------
..................................GGTGCGGCTCTGGAGG..............................................................................................................................................1611.001.00-------------1.00---------------------------------------------
............................................................................TGAGGCTGGCTGGAGGGATCGG..............................................................................................221.000.00----1.00------------------------------------------------------
............................................................................................................CCATTGACCTGGGCACTGA.................................................................1911.001.00---------------------------------------1.00-------------------
........................................................................TGGCTGAGGCTGGCTATT......................................................................................................181.000.00-----------------------------------------------------1.00-----
............................................................................TGAGGCTGGCTGGAGGTA..................................................................................................181.000.00----1.00------------------------------------------------------
........................ACTGGATCCTGGTGCGGCTTT...................................................................................................................................................211.000.00-----------------1.00-----------------------------------------
...........................................................................................GGAGAGGGTGCGCTGTAGCT.................................................................................201.000.00-----------------------1.00-----------------------------------
.........................................................................................................................................................CGGGTACCGCTATACACGGCTG.................2211.001.00-----1.00-----------------------------------------------------
..............................TCCTGGTGCGGCTCTTCG................................................................................................................................................181.000.00-------------------------------1.00---------------------------
........................................................................................................................................................TCGGGTACCGCTATACACG.....................1911.001.00------------------------------------------------1.00----------
........................................................................TGGCTGAGGCTGGCTGTAG.....................................................................................................191.000.00-------------------------------------------1.00---------------
.........................................................................................................................CACTGACCCCCACCTCCACAGTT................................................2311.0016.00------------------------------------1.00----------------------
......................................................................................TGGAGGGAGAGGGTGCGCTGCCCC..................................................................................241.000.00------------------------1.00----------------------------------
............................................................................TGAGGCTGGCTGGAGGTATC................................................................................................201.000.00----1.00------------------------------------------------------
.........................................................................................................................CACTGACCCCCACCTCCAC....................................................1920.500.50----------------------------0.50------------------------------
.........................................................................................................................CACTGACCCCCACCTCCACTT..................................................2120.500.50---------------------------------------------------------0.50-
.........................................................................................................................CACTGACCCCCACCTCCACCGT.................................................2220.500.50-------------------------------------------------------0.50---
.........................................................................................................................CACTGACCCCCACCTCCACCG..................................................2120.500.50--0.50--------------------------------------------------------
..........................................................................................................................ACTGACCCCCACCTCCACAGA.................................................2120.501.00----------------------------------------------------------0.50
.......................................................................................................................................................................CACGGCTGCCACATCTGC.......1820.500.50--------------------------------------------------------0.50--

Antisense strand
AGCAGCGGCCCTGGGCCCAGACCAACTGGATCCTGGTGCGGCTCTGGAGGGTAAGCCTGACTCGAGGGGAAGTGGCTGAGGCTGGCTGGAGGGAGAGGGTGCGCTGTCCCATTGACCTGGGCACTGACCCCCACCTCCACAGGGCTGTGGCTTCGGGTACCGCTATACACGGCTGCCACATCTGCTGAAAAC
.................................................................................(((..((((((....((((.((.((.((((......)))))).))))))...)))))))))..................................................
................................................................................81...........................................................142................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR189785SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
TAX577580(Rovira)
total RNA. (breast)
SRR189783DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR191506(GSM715616)
146genomic small RNA (size selected RNA from . (breast)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR040037(GSM532922)
G243T. (cervix)
SRR189787SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
GSM339995(GSM339995)
hues6NP. (cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR040036(GSM532921)
G243N. (cervix)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR038861(GSM458544)
MM466. (cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)
TAX577579(Rovira)
total RNA. (breast)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
GSM541797(GSM541797)
differentiated human embryonic stem cells. (cell line)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR553575(SRX182781)
source: Kidney. (Kidney)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029131(GSM416760)
MCF7. (cell line)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
.........................................................................................................................CACTGACCCCCACCTCCGTA................................................... 201.000.00--------1.00--------------------------------------------------
......................................CGGCTCTGGAGGGTAGA......................................................................................................................................... 171.000.00------------------------------------------1.00----------------
.........................................................................................................................CACTGACCCCCACCTCGTA.................................................... 191.000.00--------1.00--------------------------------------------------
............................................TGGAGGGTAAGCCTGACTC................................................................................................................................. 191.000.001.00----------------------------------------------------------
..............................TCCTGGTGCGGCTCTGGGA............................................................................................................................................... 191.000.00---1.00-------------------------------------------------------
..CTGGGCCCAGGGCCGCTG............................................................................................................................................................................ 1820.500.50------------------------------------------------------0.50----
...........................................................................................CAGCGCACCCTCTCC...................................................................................... 1560.170.17------------0.17----------------------------------------------