ID: uc003cwe.2_intron_19_0_chr3_49166586_r
GENE: (12)
chr3:49166536-49166727-


(1)
BRAIN
(1)
BREAST
(9)
CELL-LINE
(7)
HEART
(1)
HELA
(1)
KIDNEY
(2)
LIVER
(1)
OTHER
(29)
SKIN
(1)
TESTES
(1)
UTERUS
(1)
XRN.ip

Sense strand
CTCGGCTGCCGCCCCTGTGACTGCGACGTGGGTGGTGCTTTGGATCCCCAGTAAGTGTTGTAAAGGGGGCCTGGGAAGGGATGGGGAAAGATCCTGAGCAGAAGAGAAGGTTCTTCTTGAGTAACCACAGAGTTCCCTCCAGGTGTGATGAGGGCACAGGTCAATGCCACTGCCGCCAGCACATGGTTGGGC
......................................................................((((..(((((..((((....))))....(((((((....)))))))................)))))))))..................................................
.....................................................................70......................................................................142................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
TAX577745(Rovira)
total RNA. (breast)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR029129(GSM416758)
SW480. (cell line)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
GSM359193(GSM359193)
HepG2_3pM_7. (cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
....................................................................................................................TTGAGTAACCACAGAGTTCCCTCCAG..................................................26174.0074.0011.004.006.002.00-2.004.002.002.002.002.002.001.001.001.001.001.001.001.002.001.00-2.002.002.00-1.002.002.002.002.001.001.00--1.00-1.00---1.001.00-1.00-1.00-1.00--1.00--
...................................................................................................................CTTGAGTAACCACAGAGTTCCCTCCAG..................................................27118.0018.004.00--2.00-1.00-1.00-1.001.00-1.00-1.00-1.00--------2.00-------------------1.00-1.00--1.00---
..................................................GTAAGTGTTGTAAAGGGGGCCTGGGAAGGGATGGGGAAAGATCCTGAGCAGAAGAGAAGGTTCTTCTTGAGTAACCACAGAGTTCCCTCCAG..................................................9215.005.00----5.00-------------------------------------------------
..................................................................................................................TCTTGAGTAACCACAGAGTTCCCTCCAG..................................................2813.003.001.00-------------------------1.00----------------1.00----------
........................................................................................................................GTAACCACAGAGTTCCCTCCAG..................................................2212.002.00---------------1.00------------------------1.00-------------
.....................................................................................................................................TCCCTCCAGGTGTGATT..........................................172.000.00---------------------2.00--------------------------------
...............................GTGGTGCTTTGGATCCCCAGT............................................................................................................................................2111.001.00------------1.00-----------------------------------------
......................................................................................................................GAGTAACCACAGAGTTCCCTCCAG..................................................2411.001.00-----1.00------------------------------------------------
..........................CGTGGGTGGTGCTTTGGA....................................................................................................................................................1811.001.00------------------1.00-----------------------------------
...................................................................................................................................................................ATGCCACTGCCGCCAGC............1711.001.00-1.00----------------------------------------------------
...............TGTGACTGCGACGTGGGTGG.............................................................................................................................................................2011.001.00----------------------------------1.00-------------------
..................GACTGCGACGTGGGTGGTGCTTT.......................................................................................................................................................2311.001.00--------------------------------------1.00---------------
.........................ACGTGGGTGGTGCTTTGGATC..................................................................................................................................................2111.001.00-----------------1.00------------------------------------
..............CTGTGACTGCGACGT...................................................................................................................................................................1511.001.00---------------------------------------1.00--------------
..........................................................................GAAGGGATGGGGAAAGATGGTT................................................................................................221.000.00-------------------------------------------------1.00----
....................................................................................................................TTGAGTAACCACAGAGTTCCCTC.....................................................2311.001.00------------------------------------1.00-----------------
................................................................GGGGGCCTGGGAAGGGAGAA............................................................................................................201.000.00----------------------------------------------------1.00-
.......GCCGCCCCTGTGACTGCGAC.....................................................................................................................................................................2011.001.00---------------------------------1.00--------------------
...................................................................................................................CTTGAGTAACCACAGAGTTCCCTCCA...................................................2611.001.00--------1.00---------------------------------------------
............CCCTGTGACTGCGAC.....................................................................................................................................................................1511.001.00-------------1.00----------------------------------------
....................................................................................................................TTGAGTAACCACAGAGTTCCCTCCGG..................................................261.000.00---1.00--------------------------------------------------
.............CCTGTGACTGCGACGTGGGTGGT............................................................................................................................................................2311.001.00--------------------1.00---------------------------------
...........CCCCTGTGACTGCGAC.....................................................................................................................................................................1611.001.00-1.00----------------------------------------------------
....................................................................................................................TTGAGTAACCACAGAGTTCCAG......................................................221.000.00-------------------------------1.00----------------------
........................................................................................................................GTAACCACAGAGTTCCCTCCAGA.................................................2311.002.00-----------1.00------------------------------------------
....................................................................................................................................................................TGCCACTGCCGCCAGC............1620.500.50---0.50--------------------------------------------------
..............................................................................................................................................GTGTGATGAGGGCACAG.................................1720.500.50-----------------------------------------------------0.50
.............................................................................................CTGAGCAGAAGAGAAGG..................................................................................1740.250.25-------0.25----------------------------------------------

Antisense strand
CTCGGCTGCCGCCCCTGTGACTGCGACGTGGGTGGTGCTTTGGATCCCCAGTAAGTGTTGTAAAGGGGGCCTGGGAAGGGATGGGGAAAGATCCTGAGCAGAAGAGAAGGTTCTTCTTGAGTAACCACAGAGTTCCCTCCAGGTGTGATGAGGGCACAGGTCAATGCCACTGCCGCCAGCACATGGTTGGGC
......................................................................((((..(((((..((((....))))....(((((((....)))))))................)))))))))..................................................
.....................................................................70......................................................................142................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
TAX577745(Rovira)
total RNA. (breast)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR029129(GSM416758)
SW480. (cell line)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
GSM359193(GSM359193)
HepG2_3pM_7. (cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)