ID: uc003cuf.1_intron_41_0_chr3_48689152_r
GENE: CELSR3(14)
chr3:48689102-48689359-


(1)
B-CELL 		(11)
BREAST 		(11)
CELL-LINE 		(2)
FIBROBLAST 		(2)
HEART 		(2)
HELA 		(3)
LIVER 		(1)
OTHER 		(6)
SKIN 		(1)
TESTES

Sense strand
CGCAGACTGCCGGGACCTCTGGCAGACCTTTTCTTGCACCTGCCAGCCAGGTGAGCCTTGAGAGGGTTGGGGGAAGGGTGACCTGGGCAGGCGTTAGGGGCCCATGATGAAGACTGGGGAACCTGAAGGAGGCAGGGACTCGGGACGGGTGCCTGCTTCCTTCCATGCTCTGCGACCAGGATCCTGAGCTTTCTGACCCAATCTGCAGGTTACTACGGCCCAGGCTGTGTGGATGCCTGCCTCCTGAACCCCTGTCAG
..........................................................................(((....))).........(((((..(((.............)))..)))))....................................................................................................................................
.....................................................................70..........................................................130..............................................................................................................................
SizePerfect hitTotal NormPerfect NormDRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577739(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		TAX577589(Rovira)
total RNA. (breast)		TAX577738(Rovira)
total RNA. (breast)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR189787DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577579(Rovira)
total RNA. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR037934(GSM510472)
293cand4_rep3. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR029125(GSM416754)
U2OS. (cell line)
...................................................................................................GCCCATGATGAAGACTGGGGAACCTGAAG..................................................................................................................................29145.0045.0014.008.005.003.00-3.00-2.00---2.002.00------1.001.00-------1.00-1.00--1.00-1.00------
..................................................................................................GGCCCATGATGAAGACTGGGGAACCTGAAG..................................................................................................................................3018.008.006.001.00--------------------1.00-------------------
...................................................................................................GCCCATGATGAAGACTGGGGAACCTGAA...................................................................................................................................2814.004.001.00-----3.00-----------------------------------
...................................................................................................GCCCATGATGAAGACTGGGGAACCTGAAT..................................................................................................................................2911.004.00-1.00----------------------------------------
..........................................................................AGGGTGACCTGGGCAAAC......................................................................................................................................................................181.000.00-------------------------1.00----------------
.......................................................................................................................................................................................................................CGGCCCAGGCTGTGTGGATGC......................2111.001.00------------------1.00-----------------------
...........................................................................................................TGAAGACTGGGGAACCCTG....................................................................................................................................191.000.00---------------------------------------1.00--
..................................................................................................................TGGGGAACCTGAAGGGAC..............................................................................................................................181.000.00-------------------------------1.00----------
.......................................................................................................ATGATGAAGACTGGGGAACCTGAAG..................................................................................................................................2511.001.00---1.00--------------------------------------
.................................................................................................................CTGGGGAACCTGAAGCAG...............................................................................................................................181.000.00--------------------------------1.00---------
....................................................................................................CCCATGATGAAGACTGGGGAACCTGAAGGAGG..............................................................................................................................3211.001.00-------------------------------------1.00----
..................................................................................................GGCCCATGATGAAGAC................................................................................................................................................1620.500.50------------------0.50-----------------------

Antisense strand
CGCAGACTGCCGGGACCTCTGGCAGACCTTTTCTTGCACCTGCCAGCCAGGTGAGCCTTGAGAGGGTTGGGGGAAGGGTGACCTGGGCAGGCGTTAGGGGCCCATGATGAAGACTGGGGAACCTGAAGGAGGCAGGGACTCGGGACGGGTGCCTGCTTCCTTCCATGCTCTGCGACCAGGATCCTGAGCTTTCTGACCCAATCTGCAGGTTACTACGGCCCAGGCTGTGTGGATGCCTGCCTCCTGAACCCCTGTCAG
..........................................................................(((....))).........(((((..(((.............)))..)))))....................................................................................................................................
.....................................................................70..........................................................130..............................................................................................................................
SizePerfect hitTotal NormPerfect NormDRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577739(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		TAX577589(Rovira)
total RNA. (breast)		TAX577738(Rovira)
total RNA. (breast)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR189787DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577579(Rovira)
total RNA. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR037934(GSM510472)
293cand4_rep3. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR029125(GSM416754)
U2OS. (cell line)
.........CCGGGACCTCTGGCAGT........................................................................................................................................................................................................................................ 1713.000.00----1.00----2.002.00--1.002.002.00-2.00------1.00-----------------
.....................................................................................................CCTTCAGGTTCCCCAGTCTTCATCATGG................................................................................................................................. 2812.002.00--------2.00---------------------------------
...................................................................................................................................................................................................................ACTACGGCCCAGGCTGTGC............................ 192.000.00--------------------------1.00--------------1.00
...................................................................................................................................................................................................................ACTACGGCCCAGGCTGTG............................. 182.000.00---------------------1.00------------1.00-------
....................................................................................................................................................................................................CCCAATCTGCAGGTTAATA........................................... 192.000.00----------------1.00------1.00------------------
.........CCGGGACCTCTGGCAGC........................................................................................................................................................................................................................................ 171.000.00----1.00-------------------------------------
.........CCGGGACCTCTGGCAGGTTC..................................................................................................................................................................................................................................... 201.000.00----------------------------------------1.00-
.........CCGGGACCTCTGGCAGG........................................................................................................................................................................................................................................ 171.000.00--------------------------------------1.00---
.........CCGGGACCTCTGGCAGGT....................................................................................................................................................................................................................................... 181.000.00-------------1.00----------------------------
.....................................ACCTGCCAGCCAGGTATCT.......................................................................................................................................................................................................... 191.000.00-----------------------------1.00------------
........GCCGGGACCTCTGGCAG......................................................................................................................................................................................................................................... 171.000.00----1.00-------------------------------------
......................................................................................................................................................................................................CAATCTGCAGGTTACTCGTA........................................ 201.000.00---------------------------1.00--------------
........................................................................................................................................................................................................................................ATGCCTGCCTCCTGAGGGT....... 191.000.00------------------------------------1.00-----
....................................................................................................................................................................................................CCCAATCTGCAGGTTAATC........................................... 191.000.00----------------1.00-------------------------